Egri015454.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ectropis grisescens
Gene Symbol
-
Assembly
GCA_017562165.1
Location
chr03:4379164-4414886[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.01 0.57 10.8 4.2 1 23 21 43 21 43 0.98
2 18 5.9e-05 0.0033 17.8 1.5 1 23 49 71 49 71 0.97
3 18 0.01 0.57 10.8 2.3 1 23 77 99 77 99 0.97
4 18 0.0011 0.059 13.9 0.7 1 23 105 127 105 127 0.98
5 18 1.4e-05 0.00081 19.8 1.1 1 23 133 155 133 155 0.99
6 18 0.0046 0.26 11.9 0.3 1 23 161 183 161 183 0.98
7 18 1.3e-05 0.00074 19.9 0.9 1 23 189 211 189 211 0.97
8 18 0.0027 0.15 12.6 3.3 1 23 217 239 217 239 0.99
9 18 0.00092 0.052 14.1 1.8 1 23 245 267 245 267 0.97
10 18 0.00097 0.054 14.0 1.5 1 23 273 295 273 295 0.98
11 18 0.21 12 6.6 0.8 1 23 301 324 301 324 0.95
12 18 0.0018 0.1 13.1 3.3 1 23 329 351 329 351 0.98
13 18 7.4e-05 0.0042 17.5 4.7 1 23 357 379 357 379 0.99
14 18 1.4 78 4.1 0.3 1 23 385 407 385 407 0.95
15 18 6.9e-05 0.0039 17.6 1.0 1 23 413 435 413 435 0.98
16 18 1.3e-05 0.00071 19.9 2.8 1 23 441 463 441 463 0.99
17 18 0.011 0.64 10.6 0.2 1 23 469 491 469 491 0.99
18 18 0.034 1.9 9.1 0.2 1 23 497 520 497 520 0.94

Sequence Information

Coding Sequence
ATGGATTGCATGAAAATTATGAGCGCTAAGATCGAAAATAAAACTAGTCAAAGGCAACTGTATGACTGCAACGTTTGCGATTACAAAACACACAACACAGGCCATCTCAAACAGCATATTCTTAAACACACAGGAGAAAAGCCATTTGTGTGTGATTTGTGTGATTATAAGACAACACAACAGAGTGCGTTGAAACGTCATACGAAACAACACACTGGGGAAAAACCCTTTGCTTGTGACATGTGCGATTATAAAACAATACAGTcgtgtaaattaaaaatacatttaagcaCACACACTGGAGAAAAGCCATTTGAGTGTGATAAATGTGATTACAAGACCGCAGAAGCAGGTAATTTAAAACagcataaacaaaaacacacgggacaaaaaatgtttaaatgtgACATATGTGATTATGAAAGTACACGAACAAGTAGTCTAAAAATACATATACGTAAACATAcgggagaaaaaccatttgtgTGTAATTTGTGTGATTATAAAAGCATTGATGCATATAAGTTAAAACTTCATGCCTTAACACATACCGGAGAAAAGCCATTTGCTTGTGATATATGTGACTATAAATGTATAACTAACAGCAgtttaaaaatacacatacgCATACATACGGGTGAGAAACCATATAAATGTGCATTGTGTGATTATACAACATCACACCCCAGTCGATTCAATGACCACACAAAAACACACTCTAAAGAAAAACCTTTTGCGTGTAACTTGTGTAATTTTAAGACGGGTACAAATAAGTATTTGAAAGCACATCAGCGGACTCACTCTGAGGAAAAACCATATCAATGTGATAAATGTGACTACAAATCGAGGCAAGCAAGAGGGTTGAAAACACATAAACAAATCCATGAAAATGAGAAATGGCATGACTGTGACAGCTGTGATTTCAAAACTACCCAAATGTCAGTATTAAAACTGCATATTGCAACCATTCATGGAGATGAAGGATTTAAATGTACCGTATGTGATTACAAGACCTTACAAAGAAGTCAGTATAATCGACACCTTCGTACACATACTGGTATAAAAGAGTTCAAATGTGATATTTGCCATTACGAATCATCTCATGCaggtaattttaaaaaacacatACGCACACATACAGGTGAAAAGCAATTCGCCTGTGACGTTTGTGAATACAAAACTGTGTATGGAAATAAGCTTAAGCTACATAAGCTCATTCACACTGGTGAAAAGCCATTTGCTTGTGATATTTGtgattataaaacaatattccgtaataatttaaaacagcaCATTCGCACACATACTGGTGAAAAGCCTTTTAAATGTGATTTGTGTGATTACGGAACAACACATTCTAGTCATTTAACTGCACATATAAGGATACATACTGGTGAGAAACCGTATGTGTGTGATTTGTGTGGATATAAAGCAGCAGTGTTAAATACTTTGAAAATGCACAAACGCACTCATACTGGAGAAAGACCATTTGCTTGTGAACTCTGTGATTACAGATCGGCACAGTCAGGTCGTTTAAAAGTGCATATCAGTCAAAAACATATGAAAAAAGATAATGAAAGAAGCAGTGCTAAAGaaaatactaatttaaaattaagcacCTCAGTAAATTCTACAAATGATGTTGCCTTTattattgatgatgatgatgatgaaagagaCACTGATAAATTAACAGATGATAGTGACAATAACTACACTATAAATGCACAAATAAATGTAAAGAACAATCAGAAAGAAAAAGCAATTAATGTTGATGATATTGAATCTCATGataatgttttattgaataaatctACAGGTTCAAATCAGAATAAAAACAAGCATACACAATGTGTAAACAAAACATCTGATGGTGATTTGATAATTTTAGATAGTAACTCAAACAATAATACAGAATCAAATGTTAGAGATGATACCTTAATAGTTCTAGATGAAGACTCAGAGTCAGAAAATGACTGTTCTATAATAGATACCGCCACTGCACAAGTCCAAGCCAATAACAGTattcacaaaactagtgaactatctctttatgatgaactacTTAGAAAGGACAAGGCATTAACAGAAATTGTTGATAAATGCTTGGATATAGAAAACTCAACGGGTATGTCGAGGATTATGAATAGGACATTAATGCCAATTTATTTAAACACTActgaaaagtttaaaaaatcagAGTATTTCCAAAGAATGATAACTAAAACTCTTCGTAAACTTGAGACAGAACCCTATAGAAAGTACTCGCATCttaaaaatttcattgaaataatGAAGAATGAGCCTTCTTCTGACAAAGCCCTTCGTAAAATACCAGAACAATGTGAAAAACCCAAAAAGAGAGCACAGTTGACAACATTAAAAAGACAGATAAGTGGGCAACCCAGCGGCTGTATAACTACGTCTTCCGATATTGTATCAAAGAAGCCAAGACTGGacattattagtatagatgatgatgatgatcataaTTCTCATACTCATATGAATGGTCACAGCAATATAAACAATGaaatagacaaaaataatgaGACAAGTGACAGAGAATGCAAGAATATAAATCAGGATACAGATTCACAAAGTAAAAAGGATGATATGGATCatagcaataaaaataatgaaacacaTATACACAATGTGGATGACGACATTATTTTAGTTGAAGATGAAACTGATAaacatagagaaaaaaatactgaacCACCTATAGatgAACTTGAAGTGAAAGAAGTTGACTGGCGACAACCGGTTTCTCCCTACATTCAAAGTAACGAGAAGGGGAATCTCCCGTTCCCTGATTTACACGATGTGGTCAACTGTGTGGAACAAGCCAAAAATTTGTACAAACTGGATTGGAATAAGCACAGGGTTTTGACAGAAGCTCGCGCGCTATTCATTCACTACGGCCGTACGGCGCAGAAGCGGCGGCAACACCGTGAGTGGCGCCATCTCATGCGATATATGAAAGAAGAGGCCGAAGACCCGGCGGAACACGATCCAGTATTACAAGCGCGGTTGGAGGGAAACGCTAAACTGGCTCTCAAGAATGAAGACGATTTGTTGGAAAGATACGCGTTAATGGAAAATATAAATTGGAAATCCGCGGCGAAAGTTAGAGTTGAATTTGAGAGCGAGCATGACACAGACAGTGATGAAACTCTTTtggaaaataattcaaatattttatctaGTGTCGCTGTGGCGCCTTCAAATAGTATGTCTAATGTTCGAGCCATCGAGAAAGAAGCTACACCAGAACGTAGCCCTGACGCATTAgataacacaaaaatacataacaCAACAACCAATAATGTAAAAGATGTTTGTAATGAACCTACTTCTAGTAATAACGTAGATAGTacagttgtacaaaatattaacGGATGTGAGAAACAGATACCTGGTAACGTTAATTATGAAGACTTTGATGCAGTGATTGAGACTGGTATAAAACTTAATTACAATGAATCTGAAAATAATCAATCTATACAGTATAACGAAGTGTCCACAAATTCTGAAATAGATGGTGCTATTGAGAACGATATTAAAGATGAGATTACAATTGAAACAAATGAAGTTTCAAGCATTTTTGGAGGATGCGATGCATCTGAATCTGAGGTTaacacagaattaaaaattggAAACAaggtttattattttgaaaatgataGATCAGAAATTGATCAATACACGAAAAACATAGTTTCAGATTCTCTGAAAGTCAAGGAAAATAGAGACAATTCTCTTGGACTTACAAACGATAAAGGATTACATTGGTACAAAAATTGTGATCCAGTAAATGCTAATTTAAAAATGGACAACAATAATAAAGAACTATTAAATAATAGAGTTATAGAAACAGACATTAGTATCGACGCTGGGAATAATAGGACGCTAGAAGATGATCAAAGATCTCGCAATCTATTACAAAAAAGAGTCTTTAATCGTTGA
Protein Sequence
MDCMKIMSAKIENKTSQRQLYDCNVCDYKTHNTGHLKQHILKHTGEKPFVCDLCDYKTTQQSALKRHTKQHTGEKPFACDMCDYKTIQSCKLKIHLSTHTGEKPFECDKCDYKTAEAGNLKQHKQKHTGQKMFKCDICDYESTRTSSLKIHIRKHTGEKPFVCNLCDYKSIDAYKLKLHALTHTGEKPFACDICDYKCITNSSLKIHIRIHTGEKPYKCALCDYTTSHPSRFNDHTKTHSKEKPFACNLCNFKTGTNKYLKAHQRTHSEEKPYQCDKCDYKSRQARGLKTHKQIHENEKWHDCDSCDFKTTQMSVLKLHIATIHGDEGFKCTVCDYKTLQRSQYNRHLRTHTGIKEFKCDICHYESSHAGNFKKHIRTHTGEKQFACDVCEYKTVYGNKLKLHKLIHTGEKPFACDICDYKTIFRNNLKQHIRTHTGEKPFKCDLCDYGTTHSSHLTAHIRIHTGEKPYVCDLCGYKAAVLNTLKMHKRTHTGERPFACELCDYRSAQSGRLKVHISQKHMKKDNERSSAKENTNLKLSTSVNSTNDVAFIIDDDDDERDTDKLTDDSDNNYTINAQINVKNNQKEKAINVDDIESHDNVLLNKSTGSNQNKNKHTQCVNKTSDGDLIILDSNSNNNTESNVRDDTLIVLDEDSESENDCSIIDTATAQVQANNSIHKTSELSLYDELLRKDKALTEIVDKCLDIENSTGMSRIMNRTLMPIYLNTTEKFKKSEYFQRMITKTLRKLETEPYRKYSHLKNFIEIMKNEPSSDKALRKIPEQCEKPKKRAQLTTLKRQISGQPSGCITTSSDIVSKKPRLDIISIDDDDDHNSHTHMNGHSNINNEIDKNNETSDRECKNINQDTDSQSKKDDMDHSNKNNETHIHNVDDDIILVEDETDKHREKNTEPPIDELEVKEVDWRQPVSPYIQSNEKGNLPFPDLHDVVNCVEQAKNLYKLDWNKHRVLTEARALFIHYGRTAQKRRQHREWRHLMRYMKEEAEDPAEHDPVLQARLEGNAKLALKNEDDLLERYALMENINWKSAAKVRVEFESEHDTDSDETLLENNSNILSSVAVAPSNSMSNVRAIEKEATPERSPDALDNTKIHNTTTNNVKDVCNEPTSSNNVDSTVVQNINGCEKQIPGNVNYEDFDAVIETGIKLNYNESENNQSIQYNEVSTNSEIDGAIENDIKDEITIETNEVSSIFGGCDASESEVNTELKIGNKVYYFENDRSEIDQYTKNIVSDSLKVKENRDNSLGLTNDKGLHWYKNCDPVNANLKMDNNNKELLNNRVIETDISIDAGNNRTLEDDQRSRNLLQKRVFNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-