Egri008147.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr24:7367422-7373516[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0069 0.39 11.3 0.6 1 21 98 118 98 119 0.94 2 22 0.0032 0.18 12.4 1.2 1 23 126 148 126 148 0.98 3 22 0.0033 0.18 12.3 1.2 1 23 154 176 154 176 0.98 4 22 0.00016 0.0091 16.4 0.6 1 23 182 204 182 204 0.98 5 22 0.00017 0.0093 16.4 1.6 1 23 210 232 210 232 0.98 6 22 0.001 0.057 13.9 1.6 1 23 238 260 238 260 0.98 7 22 0.00077 0.043 14.3 0.7 1 23 266 288 266 288 0.98 8 22 0.00049 0.028 14.9 0.5 1 23 294 316 294 316 0.98 9 22 0.011 0.63 10.7 0.9 1 23 322 344 322 344 0.98 10 22 0.026 1.5 9.5 3.4 1 23 350 372 350 372 0.98 11 22 0.00046 0.026 15.0 1.6 1 23 378 400 378 400 0.98 12 22 9.7e-05 0.0055 17.1 0.8 1 23 406 428 406 428 0.98 13 22 0.00049 0.028 14.9 0.5 1 23 434 456 434 456 0.98 14 22 0.011 0.63 10.7 0.9 1 23 462 484 462 484 0.98 15 22 0.026 1.5 9.5 3.4 1 23 490 512 490 512 0.98 16 22 0.00087 0.049 14.1 1.1 1 23 518 540 518 540 0.98 17 22 0.00044 0.025 15.1 0.8 1 23 546 568 546 568 0.98 18 22 0.0075 0.43 11.2 0.4 1 23 574 596 574 596 0.98 19 22 0.011 0.63 10.7 0.9 1 23 602 624 602 624 0.98 20 22 0.026 1.5 9.5 3.4 1 23 630 652 630 652 0.98 21 22 0.008 0.45 11.1 2.1 1 23 658 680 658 680 0.98 22 22 0.14 7.9 7.2 5.1 1 23 686 708 686 708 0.97
Sequence Information
- Coding Sequence
- ATGGCCAATGACCCTGAGCAAATGGGCACAGCAGATACAAAGACTGACTTGTCGCTAACTGATAACTGCAGCAGAGACGAGAGCATACCTGCAGCAGTAAATACTCAGCCTTTCAAACAGGAAATCGACAACACCATGTGCGGCACAACACCTCCGCCGAGTGGTTTAATAATCGAGCATGCCCAGATACACTCCGAAGAATCCTTACAATGTGATAATTCATGTGGTTATAAGCCTACTAAAAACTGTCATTTACGGGGTATAAAAATGTCACTTACTGGAGTAAAACtgtttgaatgtgatatgtgtgattatagaacatCACAAGCAATAACttttaaaaaacacaaattaactcTTACTGAAGAAAAACCAtttaaatgtgatatgtgtgattatagagcatcacaagcaataactttaaaacaacacaaattcacacatactggagaaaaaccatttgaatgtgatatgtgtgattataaagcTTCACAAGCATCCCgtctaaaacaacacaaattcacacatactggagaaaaaccatttcaatgtgatatgtgtgattatagagcatcacgagCAATAAATTTAAGACAACATAAATTAactcatactggagaaaaaccatatgaatgtgatatgtgtgattatagaactTCAGTAGCATACAatctaaaaaaacacaaattcacACATACTGGAAAAACCCCAtataaatgtgatatgtgtgactaTAAAGCATCACAAGCAAGaactttaaaacaacacaaattaaaacatactggagaaaaaccatttgaatgtgatatgtgtgattatagagcatcacaatcaataagtttaaaacaacataaattaactcatactggagaaaaaccatatgcatgtgatatgtgtgattatagagcatcacaatcAATAAGTTTAAAACGACATAAATTAactcatactggagaaaaaccatatgaatgtgatatgtgtgattatagagcatcactaCCAAGaactttaaaacaacacaaattcacacatactggagaaaaaccatttgaatgtgatatgtgtgattatagagcatcaaaaTCATCCCatataaaacaacacaaattcacacatactggagaaaaaccatttcaatgtgatatgtgtgattatagagcagcacatgcaacaaatttaaaacaacacaaattaactcatactggagaaaaaccatttgaatgtgatatgtgtgattatagagcatcacaatcaataaatttaaaacgacATAAATTAactcatactggagaaaaaccatatgcatgtgatatgtgtgattatagagcatcacaatcAATAAGTTTAAAACGACATAAATTAactcatactggagaaaaaccatatgaatgtgatatgtgtgattatagagcatcactaCCAAGaactttaaaacaacacaaattcacacatactggagaaaaaccatttgaatgtgatatgtgtgattatagagcatcaaaaTCATCCCatataaaacaacacaaattcacacatactggagaaaaaccatttcaatgtgatatgtgtgattatagagcagcacatgcaataaatttaaaacaacacaaattaactcatactggagaaaaaccatatgaatgtgatatgtgtgattataaagcatcacaagcaaaaaatttaaaagaacacaaatacacacatactggagaaaaaccatatgaatgtgatatgtgtgattatagagcatcactagcaaaaactttaaaagaacacaaattaactcatactggagaaaaaccatatgaatgtgatatgtgtgattatagagcatcactaCCAAGaactttaaaacaacacaaattcacacatactggagaaaccccatttgaatgtgatatgtgtgattatagagcatcaaaaTCATCCCatataaaacaacacaaattcacacatactggagaaaaaccatttcaatgtgatatgtgtgattatagagcagcacatgcaaaaactttaaaagaacacaaatacacacatactggagaaaaaccacatgaatgtgatatgtgtgattatagagcatcaaaaTCATCCCatataaaacaacacaaattcacacatactagagaaaaaccattttaa
- Protein Sequence
- MANDPEQMGTADTKTDLSLTDNCSRDESIPAAVNTQPFKQEIDNTMCGTTPPPSGLIIEHAQIHSEESLQCDNSCGYKPTKNCHLRGIKMSLTGVKLFECDMCDYRTSQAITFKKHKLTLTEEKPFKCDMCDYRASQAITLKQHKFTHTGEKPFECDMCDYKASQASRLKQHKFTHTGEKPFQCDMCDYRASRAINLRQHKLTHTGEKPYECDMCDYRTSVAYNLKKHKFTHTGKTPYKCDMCDYKASQARTLKQHKLKHTGEKPFECDMCDYRASQSISLKQHKLTHTGEKPYACDMCDYRASQSISLKRHKLTHTGEKPYECDMCDYRASLPRTLKQHKFTHTGEKPFECDMCDYRASKSSHIKQHKFTHTGEKPFQCDMCDYRAAHATNLKQHKLTHTGEKPFECDMCDYRASQSINLKRHKLTHTGEKPYACDMCDYRASQSISLKRHKLTHTGEKPYECDMCDYRASLPRTLKQHKFTHTGEKPFECDMCDYRASKSSHIKQHKFTHTGEKPFQCDMCDYRAAHAINLKQHKLTHTGEKPYECDMCDYKASQAKNLKEHKYTHTGEKPYECDMCDYRASLAKTLKEHKLTHTGEKPYECDMCDYRASLPRTLKQHKFTHTGETPFECDMCDYRASKSSHIKQHKFTHTGEKPFQCDMCDYRAAHAKTLKEHKYTHTGEKPHECDMCDYRASKSSHIKQHKFTHTREKPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -