Egri008294.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr24:8830372-8839143[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0014 0.082 13.4 0.5 1 23 23 46 23 46 0.94 2 20 0.019 1 10.0 2.8 1 23 105 127 105 127 0.98 3 20 0.015 0.87 10.2 0.1 2 23 156 178 155 178 0.96 4 20 7.9e-06 0.00044 20.6 1.5 3 23 203 223 202 223 0.98 5 20 0.045 2.6 8.7 2.1 2 23 227 248 226 248 0.95 6 20 0.0024 0.13 12.8 4.5 1 23 253 276 253 276 0.96 7 20 0.59 33 5.2 3.7 2 23 288 310 287 310 0.95 8 20 0.0065 0.37 11.4 0.5 1 23 316 339 316 339 0.96 9 20 5.3e-06 0.0003 21.1 0.5 2 23 344 365 343 365 0.96 10 20 2.7e-05 0.0015 18.9 1.7 1 23 371 393 371 393 0.98 11 20 0.021 1.2 9.8 1.9 1 23 468 490 468 490 0.99 12 20 0.027 1.5 9.4 0.3 2 23 518 540 517 540 0.96 13 20 0.00016 0.0091 16.4 1.7 3 23 565 585 564 585 0.98 14 20 0.0019 0.11 13.1 0.3 2 23 589 610 588 610 0.96 15 20 0.22 13 6.6 7.7 1 23 615 637 615 638 0.92 16 20 0.18 10 6.8 3.3 2 23 650 672 649 672 0.95 17 20 0.00053 0.03 14.8 0.4 1 23 678 701 678 701 0.98 18 20 1.1e-07 6e-06 26.4 0.4 2 23 706 727 705 727 0.96 19 20 0.0003 0.017 15.6 1.1 1 23 733 755 733 755 0.98 20 20 0.0064 0.36 11.4 0.7 1 23 759 782 759 782 0.94
Sequence Information
- Coding Sequence
- ATGCGGCTCAGGTTTTATGACACTGCGGCTCCTGAAGAAGCACTTGAAGTCCACGAGACTGGCAACTTCCCTTGCGACAGATGTGAGAAATCTTTCACGACCAGTTATAAAAGGGCTTTACACGTTCGGGGAGTCCATCTGAAGCAATACCCTCGTCGATGCCCGATGTGGAAGCCAGCGACACCGCAAGCCTCAAAGAAAGACGAAGGACCGAGAACTAGTGCGTGGATTATCACGGCACCAGAACGAGAAAATGCAGCTACGTTCCTTCAATACACTACTGTCGTACCTTTCGTGTTGTTTCACGGCAACTACAAATGCTTCTATTGTGAAGAGACGTTCACAGAACTGCATCCAGTTCTTCAGCACACGAAAACTCACGCTGTTCCCAATCGGTCTTCCCTCTTAAGTAAATACGTCAAAAACGGCAGAAAAATAGTCGTCAAAGTCGACATTTCCGGATTGAAATGTAGAATCTGTGAGTTGAAATATTCTAAATTGGATGACATCAGAGCTCATTTGATCACAGCACATAAGAAGGTGTTCAATAAAGCTGGAAATGGTTTGATGGCTTACAATTTAAGCATACCGAATGGCAACGTCGCTTGCCACATATGCGACATGGAATTCTCGTCCTTTTTCAATTTGAACCGACATATGAACGTACACGATAACTTGGTCTGTGAGACTTGCGGCTTAGGATTTATGACTCACCATCGACTTCGGACTCACAGAGTGATCCACGAAAATGGAAGTCACAAATGTGACCAGTGCTCTAAAATATTCACCACGAAACTTAAATTACGGTATCACATAGACAAATTCCATAAAGAGGCCAGCGAGATGAAGATGAAACGTCAGAAATGCCCTCATTGTCTCGAAAGATTTTCTGGACACTACAGAAAGCTGACTCACATGAGAGAAGTTCACGGAGTAACATTTAAATTCGAATGTCAGACGTGTAAAGCCGAATTCCCGACAAAGTTAGCGTTGACACAGCACACGACAAAAATCCATATACAAAACGTCGTGTGCAAAGTCTGCGGAAAATGCTTTGCAACTCCAAGCAGACTGAAGATACATGCTCGAGGACATACGGGCGAGAGGAACTTCATTTGTGCTATCTGTCAAAAAGCATACATGCACGAGAGAGAATTAAGGAGACACATGAAGACCCACGGATATAAGATCCACGACTTCACCTCAGAAAAACAAGAAATCAAGAACCAGCGAATGGATCTTGACACTGTCAGAGCGAGAAAACaAGCGACACCAGTGCAAGCTCAAACCGATGAGGGGCCAAGAACTAGTGCGTGGATAATCACAGCAACAGAACGAGTGAACGCGGCTGCGTTGATTCAATTCACAACAGTCATACCTTTCACAGCGCTGCAGGGCAGCTATAAATGCTTCTACTGTGAAGAAATTTTCACTGAACTACATGCGGCACTACAGCACACGAAAACCCACACAGTTCCTAGTCAATCCGCTCTATTAGACAAACACATTAAAAACGGTAAACGAGTCATCAAAGTTGATGCGTCAGGCCTGAAATGCAGAATCTGCGAGCTTAAATATACAGAACTTGATGACATTAGAACACATTTGAATACCGTCCATAAGAAAGTCTTTAATAAAGGTGGAAATGGTTTGATGCCGTACAATTTGAGCACACCTAGTGGCAACGTTGCATGCCACAAGTGTGGCTCCGAATTCACTAGTTTTTTTGCTTTGAATCGACACATGAATGTCCACGATAATTTGGTTTGTGAGATTTGTGGGTCAGGATTCGTGTCGCATTCAAGACTGCGAAGCCATAGGATAGTGCATCAAAACGGGAACCACAAATGCGACCAATGCGATCAGGTTTTCACAACAAAAATGAAGCTGCGTTGCCACGCGACCAGACATCACGAACAGACGAATGAAAAGAGACTGAAACCAAACAAATGCCCGCACTGCTTGGAAAGGTTTTCTGAACACTACCAAAAGTTACTCCATATGAAAGAAGTCCATcaaattaagtttaaatttgAATGCCAGACTTGCAAAGCTGAATTTCCTAATAAGATGGCCTTGACAGAACATACAAGGAAGGTCCACATACAAAATATAGTGTGCAAGATTTGTGGGAAGTGCTTTGGGAATCCTGGTGCGCTAAGGAGGCATATGAGAGGCCATACGGGAGAGAGAAGTTTCGTCTGCGCGGTGTGCCAAAAAGCATACATGCATGAGAAGCAGCTAAGGGTGCACGTAAAAACACACGGATACCGGTTCACATGCATTAAATGTGGCAACGGTTTCATGGACAAGGCTGAATTGAAGAAGCATAAAAGACAGTGGCATTCGGAACAGGCGACGAAAAACTTTTCTGAATTACCTCTATAG
- Protein Sequence
- MRLRFYDTAAPEEALEVHETGNFPCDRCEKSFTTSYKRALHVRGVHLKQYPRRCPMWKPATPQASKKDEGPRTSAWIITAPERENAATFLQYTTVVPFVLFHGNYKCFYCEETFTELHPVLQHTKTHAVPNRSSLLSKYVKNGRKIVVKVDISGLKCRICELKYSKLDDIRAHLITAHKKVFNKAGNGLMAYNLSIPNGNVACHICDMEFSSFFNLNRHMNVHDNLVCETCGLGFMTHHRLRTHRVIHENGSHKCDQCSKIFTTKLKLRYHIDKFHKEASEMKMKRQKCPHCLERFSGHYRKLTHMREVHGVTFKFECQTCKAEFPTKLALTQHTTKIHIQNVVCKVCGKCFATPSRLKIHARGHTGERNFICAICQKAYMHERELRRHMKTHGYKIHDFTSEKQEIKNQRMDLDTVRARKQATPVQAQTDEGPRTSAWIITATERVNAAALIQFTTVIPFTALQGSYKCFYCEEIFTELHAALQHTKTHTVPSQSALLDKHIKNGKRVIKVDASGLKCRICELKYTELDDIRTHLNTVHKKVFNKGGNGLMPYNLSTPSGNVACHKCGSEFTSFFALNRHMNVHDNLVCEICGSGFVSHSRLRSHRIVHQNGNHKCDQCDQVFTTKMKLRCHATRHHEQTNEKRLKPNKCPHCLERFSEHYQKLLHMKEVHQIKFKFECQTCKAEFPNKMALTEHTRKVHIQNIVCKICGKCFGNPGALRRHMRGHTGERSFVCAVCQKAYMHEKQLRVHVKTHGYRFTCIKCGNGFMDKAELKKHKRQWHSEQATKNFSELPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -