Egri001910.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ectropis grisescens
Gene Symbol
-
Assembly
GCA_017562165.1
Location
chr05:1746666-1753906[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00014 0.0079 16.6 0.1 1 23 45 67 45 67 0.98
2 20 0.0034 0.19 12.3 6.1 1 23 73 95 73 95 0.98
3 20 0.011 0.59 10.7 0.5 1 23 101 123 101 123 0.97
4 20 0.00046 0.026 15.0 3.6 1 23 129 151 129 151 0.99
5 20 0.033 1.9 9.2 1.0 1 23 157 179 157 179 0.97
6 20 0.12 6.5 7.5 1.2 1 23 185 207 185 207 0.98
7 20 1.5e-06 8.7e-05 22.8 4.0 1 23 213 235 213 235 0.98
8 20 0.0026 0.14 12.7 1.1 1 23 241 263 241 263 0.98
9 20 0.036 2.1 9.0 1.0 1 23 269 291 269 291 0.98
10 20 1.9e-05 0.0011 19.3 0.6 1 23 349 371 349 371 0.99
11 20 0.0021 0.12 12.9 2.4 2 23 377 398 377 398 0.97
12 20 1.3 71 4.2 0.8 1 23 404 426 404 426 0.96
13 20 0.28 16 6.2 0.0 8 23 587 603 586 603 0.88
14 20 0.00037 0.021 15.3 0.9 2 23 612 633 611 633 0.95
15 20 7.9e-06 0.00044 20.6 0.3 2 23 642 663 642 663 0.96
16 20 0.038 2.1 9.0 8.1 1 23 671 694 671 694 0.95
17 20 1.1e-06 6e-05 23.3 0.5 1 23 699 722 699 722 0.97
18 20 1.6e-05 0.00088 19.6 4.5 1 23 728 750 728 750 0.98
19 20 0.00096 0.054 14.0 1.5 3 23 758 778 756 778 0.97
20 20 1.9e-05 0.0011 19.4 2.8 1 23 784 806 784 806 0.98

Sequence Information

Coding Sequence
ATGGATGACTCTTCAGCTAACACTGAGCAAATAGTAGAAAATAAACACCAACAACAACAAATGGACAACACAGAATCACTAAAAGAAATTGATATAGAAGAGCAGGAACAAAAACACCCTGCAAAAAAGATATACAAATGTGACATATGTGATTATACATCAGTTAGACCAAGCTATATAAAAGAACACATACTAATACACACCGGAGAGAGACCATTTAAGTGTGATGTATGTGACCACACTTCAAGGCGATTATGTGATCTAAAACGTCACAAACTAACACACAATGGAGAAAAGTCATATAAATGTACCATGTGTGATTATAAAGCATTGCAAGCTGTTACTTTAAAGCGTCATATAGACACACATACGGGAGAAAAGCGATATAAGTGTAATATGTGTGACTTTAAATCAGCAagagaaaattatttaaaacatcatATGAAAATTCACACAGGTGAAAAACCATATGCATGTCAACTTTGTGATTACAAAGGAAAACTCGGTAGTCATTTAAAGTTGCACATGGCAAAACACACAGGAGAAAAACCATACAAGTGTGAAATGTGTGATTACAGAGCACACTTAGCACGCACTATCAGACTTCATATGAGAATACACACAGGAGAAAAGCcacataaatgtaaatattgtgATTATAAAACATCAGATGCAAGTAATTTAAATCAACACATGAAAACACATACTGGAGAGCGACCGTATCCATGTCATCTCTGTGATTATAAAGCATCCCTAGCTCGTACTTTGAGACGGCATATTGAAAAGCACACCGAAGGAAAATCACATAAATGTGATCAGTGTGGTTACTCAGCATTAACTGTGGCAAAATTGAAACAGCATATGATGTCACATGCAAACTATGaacaaaatgaattaaataGTGTAGGACCATCAACCTTTCAAATAAGTAATTACCCTACAATGAGGGGGATGACTGTAACtgcaaatgatgatgatgttgacatATCAGTACCACCACAAGCAGAGGAGCAACTAACGAGATCTGATACTGAAGAAGAACAATACGAATGTGATAAGTGTGATTACAGCTCAATATATCAAAGTGATTTGAAAGAACATATAAAATCACATACTGAACAAATTAATgagtgtgatatgtgtgattttaAATCAACACATGAAAATGATTTAAAACAACATATTAAAACACATCTACAAAACCAACCATACAGTTGTGATTTATGTGACTTTAGAGCTATAGCAGAGAGTGATTTAAAATGCCACATAAAATCACACTCAGAATTAAAAGAACATATAAAACATATGCAAGACCCATATAattgtgatatgtgtgattttaAATCTTTGGAGTCAAATGTTTATTCCTTTTGCACATCTGTCGAGGTGAGTCCAGATGATGAGCTGCCAAAGACACTGTGCAACACTTGTCATGAGCTCTTAGAAACATTTTCCCACTTCAAAAACGCCTGCATCCAATCCCAGAACACCCTCATTTTCCAGAGTAATATAAAACTTCCAGAAGAAAACCTGTTGAATAGATCTGATGCAGATAATATTGATGAGAGGTGTGAGGTGGTTGTTAGTGAATTCAAAGTAAATGATTATGGTGCAGACACAAATGACGGCGatttaaacaatgattttgAGGCCTGTCAGGAGGATAAAAATTACAGTAGTCATGatgtgacgtcacaatatgatgaagatgatgagcCTCTTCAGGAGCTGAGGAAAAAAGATAGAATTGACAATAAGCGCGTGTTCGCGACGTGGAGCGGGCTGCAGCGGCACGCGGACAGCGAGCACCGCGCCGTGCGGCTGGCCTCGCTGCGGTGCCGCGCCTGCGGGAAGGTGTTCCGCAACCGCCAGACCCTGCGCCTCCACGCCAAGCTGCACGACCTGCCCAGGGACCACGCCGCCGTGTGTCACGTCTGCGGGAAGAGCTACTCTAGCCCAGTTACACTCAGGCTGCACATGGAAGGCCACAACGAGAACCGCGCGCGTGATCACCCGTGCCCCCACTGCGGGAAGAAATTCTTCACCAAACACATCCTGCACTCCCACGTGAAGCGGCTGCACTCCGGCCAGCGCTACGTGTGCCAGCTCTGCGGCTACCCCTTCACCGACAAGTACAACCTCTCCAAACACCTCCTCAAGGTGCACCAGGGCATCAAAGAACACAAATGTGATATTTGCGATAAATTCTTTTCTACCCATTCGACGCTCGTTATACATAAGAGGATTCATTCGGGGGAGAGGCCGTACGGTTGCGCGTATTGTGGCAAGGCTTTCAGCTCGAAGAACAGGCAGATAGTGCACCATAGGACGCATACGGGGGAACGGCCGCATCGGTGTACGGTCTGCAACCTGGCCTTCACGCAGCTTGGGACCATGAAGCGGCACATGAAGACGCACAGCAAGCCGCCGCCGGTTCTAGCTGGGGGTAGTTACGAGAAGCTGCCTGTACCATCAGCTGACTGTCTTGCTCTGGCATAG
Protein Sequence
MDDSSANTEQIVENKHQQQQMDNTESLKEIDIEEQEQKHPAKKIYKCDICDYTSVRPSYIKEHILIHTGERPFKCDVCDHTSRRLCDLKRHKLTHNGEKSYKCTMCDYKALQAVTLKRHIDTHTGEKRYKCNMCDFKSARENYLKHHMKIHTGEKPYACQLCDYKGKLGSHLKLHMAKHTGEKPYKCEMCDYRAHLARTIRLHMRIHTGEKPHKCKYCDYKTSDASNLNQHMKTHTGERPYPCHLCDYKASLARTLRRHIEKHTEGKSHKCDQCGYSALTVAKLKQHMMSHANYEQNELNSVGPSTFQISNYPTMRGMTVTANDDDVDISVPPQAEEQLTRSDTEEEQYECDKCDYSSIYQSDLKEHIKSHTEQINECDMCDFKSTHENDLKQHIKTHLQNQPYSCDLCDFRAIAESDLKCHIKSHSELKEHIKHMQDPYNCDMCDFKSLESNVYSFCTSVEVSPDDELPKTLCNTCHELLETFSHFKNACIQSQNTLIFQSNIKLPEENLLNRSDADNIDERCEVVVSEFKVNDYGADTNDGDLNNDFEACQEDKNYSSHDVTSQYDEDDEPLQELRKKDRIDNKRVFATWSGLQRHADSEHRAVRLASLRCRACGKVFRNRQTLRLHAKLHDLPRDHAAVCHVCGKSYSSPVTLRLHMEGHNENRARDHPCPHCGKKFFTKHILHSHVKRLHSGQRYVCQLCGYPFTDKYNLSKHLLKVHQGIKEHKCDICDKFFSTHSTLVIHKRIHSGERPYGCAYCGKAFSSKNRQIVHHRTHTGERPHRCTVCNLAFTQLGTMKRHMKTHSKPPPVLAGGSYEKLPVPSADCLALA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-