Egri008446.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr24:7425889-7437417[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0035 0.2 12.2 0.0 2 21 66 85 65 88 0.89 2 26 0.0011 0.062 13.8 0.2 2 23 94 116 94 116 0.93 3 26 0.0026 0.14 12.7 3.3 2 23 121 143 120 143 0.95 4 26 0.15 8.7 7.1 0.7 1 23 148 171 148 171 0.96 5 26 0.00018 0.01 16.3 4.3 1 23 175 198 175 198 0.97 6 26 0.011 0.61 10.7 2.7 2 23 205 226 204 226 0.96 7 26 5.7 3.2e+02 2.1 0.3 1 10 232 241 232 243 0.89 8 26 0.24 14 6.4 0.3 1 20 283 302 283 305 0.93 9 26 0.046 2.6 8.7 0.2 2 23 337 359 336 359 0.95 10 26 0.011 0.64 10.6 0.4 3 23 383 404 382 404 0.95 11 26 0.00055 0.031 14.8 1.0 1 23 409 432 409 432 0.97 12 26 0.0046 0.26 11.8 0.4 1 23 437 460 437 460 0.95 13 26 0.012 0.68 10.5 0.6 2 23 466 488 465 488 0.93 14 26 0.0003 0.017 15.6 0.5 2 23 496 518 495 518 0.97 15 26 0.005 0.28 11.8 0.1 2 23 525 546 524 546 0.96 16 26 6.7e-06 0.00038 20.8 1.9 1 23 552 574 552 574 0.95 17 26 0.00099 0.056 14.0 2.4 3 23 581 601 580 601 0.97 18 26 3e-07 1.7e-05 25.0 0.6 1 23 733 755 733 755 0.99 19 26 0.065 3.7 8.2 0.6 1 23 871 893 871 893 0.98 20 26 0.48 27 5.5 0.1 2 23 919 941 918 941 0.95 21 26 0.00067 0.038 14.5 2.1 3 23 994 1015 993 1015 0.98 22 26 0.00045 0.025 15.0 0.6 1 23 1020 1043 1020 1043 0.97 23 26 0.029 1.6 9.4 3.4 1 23 1049 1072 1049 1072 0.98 24 26 0.0019 0.1 13.1 0.9 2 23 1079 1101 1078 1101 0.95 25 26 0.042 2.3 8.9 2.3 1 23 1107 1129 1107 1129 0.95 26 26 0.004 0.23 12.0 0.8 1 23 1135 1158 1135 1158 0.87
Sequence Information
- Coding Sequence
- ATGCAGACGTGTAAGGGTGAAAAATCTTGCATCAAACTGGATATAAATGGTCTGGCTTGCAAACTGTGCCAACAACCCATGAACGATTTAAAAACATTCGTAGACCATGTTGTTGGTGAACACAAAGCCGACTATGACAAAACTGTGCCGTTTAAAGATTGCTTCGAAGCCTTCCAGCTCACTCAAGGCAAGATACCTTGCCCGGAATGTCAGAAACCTTTCGCGTATTTCGCGACATTGCTGAAGCATTTAGGCGCAGAGCATAACCACCATAAAGCTGTTTGCGCTTACTGCGGCCGAGGTTTTCGAACAACCACGAGCTTGGCAATGCATATCACCAACTCTCACACCGGAACATGTGAATGTACTATTTGCAATGCGAAATGCAAGAACTCTGCCGCTTTATCGCGACATATGGCCCGGTTTCACGACGCTAAAGATTTTAAATGCTCGCAGTGCCCTGAGCTATTCGAGACGATATATAAAAAGCAGAATCATTTGATCAAAGCACACAATGTTGGACACAAATGCGGTTATTGCGAGAAAATGTTTACTAGGAATTCGTTCATGATGAACCATGTGAGGAGGACGCATTTGAAGGAACGGACCGTGCCTTGTTCCGTCTGTCATGTTAAGTTCTTTGATAGCTATCATATGAGGCTTCATATGGTGAAACACGAGGGCATGAGGCGTTTCAGATGCGATGTGTGTGGTCCAAAATTTAATGCAGTGGAAGACCATAATAAGAAAATGGACTTCGCACGTAAGCTATTCATAAAACGGCGGAACATCGAATACGTTCTGCAGTATTGTAACGTTATCCCATTCCTGTGGTACAAATCAAAGTACATCTGTTTCTACTGCAACGAGCCGATGAAAGATCTAGATAGCTTGAGGCAGCACACTCCTAGCCATAGAAACACTAATCTTGAGCTTGTGGTCTTCGATAGGACGAAAAGTAAAAGGAACAAAGACGCGGCCATCAAGATCGATGTCCCCAACGATATAAAATGTAAGCTTTGCTCAGAAACTTCTAATTCCTTAAAAGAGTTCATACAACATATAATCATAGCTCATGATGCAGAATATGACGTCAGCATCCCTAATTGTTTCCTACCATTCAAACTCAACAGAGAACAGCCTATTTGCGGAACGTGCAACGAGAAATTCGTGTCATTCGAGTATCTGCTGAGGCATGCAAACAAAAACCACCTCTCTCACCAGTATATTTGCGATGTTTGTGGCGTGAGCTTCCAAGGCCAAGTGCATTTGAGGATGCATTACAGGTATTACCATAGAGAAGGGGGCTATACTTGTAAGTTGTGTGACGTCAGCTTTGATACGCTTGCGAAGATGATGCAGCATGAGAAGAACGCGCACGATGTGAAGCTATCTTCGTGCCCTCATTGCACTGAGGTGTTTAAGAGTCCCTATGTGAAGAAGCTTCATATGGCGAACGTACACGGTGTCGAAGAGATGAAAATCAAATGTCCTCATTGTCCGAAAGTGTACCCCCAGGAGAGTATAATGTCTCGGCACATGAGACGCGTTCATTTGCGTGAAAAAAATGTGGAATGTGAAGTTTGCGGGGACAAATTCTTTGGGCCATACGAACTAAAATTACACATGCTCAAGCATAACGGGGATAAAAACTTTGCCTGCAGCGTTTGCGGGAAGAAATTCTCCAAGAAATGCAATCTGAATGCCCACATGGGCTTACATAAGAGGGAGAAAAAGATATGCTCGATTTGTGATAAACATTTCAGTAGCGACAAGGATCTGAAGGAACATTCGAAGAGTCACGAAGAAATCGAAGTAGGGAACATACTTGATGATATAGCAGACAATAGCATGGGCGAGATTATTGAAGACGTCACTGAAATACAAATGGAAGTTATTCACGATGGTATAGATGACGCTGGGTTAATAGCGCTCGGCGAAAGTAGTGGGGTGACTCGCGCATGTGGACCATCGCGCCCAATCCAAATCGGAGATTCAAAACGTGCGCAGGCAGCGGGACGAATGGGAGGAAGGAACGCGACTGACGAACCAATAACAGACGCCCGCGCGGGCGACCTCGCGTCTCGCCTCACTCTTCTTACCTGTGATATCCAAAAATCGACTTCTGCGCATACAAGTGCTGGAATCAAATGGCTGATTAAGCTCCATAGGCGGAAGCATTTCGGGGTGAAAGAGTATACTTGTAGCATTTGCGAGCGACAATTCGGTAGATCCAGCAATCTCAGGGCCCATATGAAAGTGCATACTGGAGAACCTAGGGGTGGCCAGAAAATCGTTGCAGCCAAACCAAAAGCCGAAACCATCCCGAAGACCAAACCCAAAACTGGAACTCTCGTAACTAAACCAAAAGTTGGAACTGTTTTAGCCTCTAAACTGAAATCTAGCAAACTCAAAAGCACCACGTTGAATACAAAGTCCCCTGGCGTTAAAGAGATCATCGACAAAGACCTTGCGCCACCTGTTAACATCCTTCAAAAGAAAGGTCCCAAACGTCTCTCAGCCAGAGAGAAACGCAACATAATGATCCGTAACGTTACTCAAGTCTTGTTAAAGACCACAGTAATGCCCTTCAGATGGCTCAAAAGCTCCTATCGTTGCTTCTATTGCTATGACATATTTCAAGAAGCATCAGAACTCAAAGAACATCAGTCTGTCCATAAAGGAGAGGATTTTATAGAGAAAGCGATGAACAACTATTGGGAGCCAGTCGTTTATCTGGATATTTCGGAGATGAGGTGCAAATTGTGTCCAGAAAACATTACAGACCTCTATGAAATGATTGATCATTTAGTAACAAAACATGATGTGGTCTTCAACAAAGATATAGGCATGTGTATGGTCGCTTTCAAGCTCGACAACCTCAACATCTTTTGTCTGAGTTGTGGAGCTGCCTTCTTTACTTTCGGGCCTTTGCTCTGCCACACAAATAAAGCCCACAAAGGCACTAATGTACTCCTTTGTGAAGTATGTGGCCAGCATTTTAAACACGCAAATTTGTTACGGTTACATGTGAAAACAGTtcacgagaaagctagcttccCCTGCACTGATTGCGACGAAAAATTCCTGACTCCGGCAAAGTTAAAAACTCATCAGAAGAGTCAGCATTACGTGGTGAAAAGGTACAAATGTCTGGTTTGTACGGAGACATTTCAGAGTCACTATAAGCGATCGAGGCACATGGCAACAGAGCATGAGAATAGGAAAGTTGTCAAATGCCTTCAATGCCCCAAGACCTTCATTTTCCGGAGTATGATGATGACGCATTTGCGGGATACCCATCTGAAGGTGCGGAACCACATGTGCAGTGTCTGCGGTTGGAGAGCCTTCAACAGTAACAGATTGAAGAACCACATGTTCAAGCATAGTGGGGAGAAGAATTTTAAATGTGAAGTTTGCGATAAGGCTTTTTCTACGAGGAAGATCATGATGGCGCATTTTTCGAGGATGCACAGGGCACCACAACAGCCTGTCGTGTCGTACGGCAATCCTTATGAGCCCCAGTAG
- Protein Sequence
- MQTCKGEKSCIKLDINGLACKLCQQPMNDLKTFVDHVVGEHKADYDKTVPFKDCFEAFQLTQGKIPCPECQKPFAYFATLLKHLGAEHNHHKAVCAYCGRGFRTTTSLAMHITNSHTGTCECTICNAKCKNSAALSRHMARFHDAKDFKCSQCPELFETIYKKQNHLIKAHNVGHKCGYCEKMFTRNSFMMNHVRRTHLKERTVPCSVCHVKFFDSYHMRLHMVKHEGMRRFRCDVCGPKFNAVEDHNKKMDFARKLFIKRRNIEYVLQYCNVIPFLWYKSKYICFYCNEPMKDLDSLRQHTPSHRNTNLELVVFDRTKSKRNKDAAIKIDVPNDIKCKLCSETSNSLKEFIQHIIIAHDAEYDVSIPNCFLPFKLNREQPICGTCNEKFVSFEYLLRHANKNHLSHQYICDVCGVSFQGQVHLRMHYRYYHREGGYTCKLCDVSFDTLAKMMQHEKNAHDVKLSSCPHCTEVFKSPYVKKLHMANVHGVEEMKIKCPHCPKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYELKLHMLKHNGDKNFACSVCGKKFSKKCNLNAHMGLHKREKKICSICDKHFSSDKDLKEHSKSHEEIEVGNILDDIADNSMGEIIEDVTEIQMEVIHDGIDDAGLIALGESSGVTRACGPSRPIQIGDSKRAQAAGRMGGRNATDEPITDARAGDLASRLTLLTCDIQKSTSAHTSAGIKWLIKLHRRKHFGVKEYTCSICERQFGRSSNLRAHMKVHTGEPRGGQKIVAAKPKAETIPKTKPKTGTLVTKPKVGTVLASKLKSSKLKSTTLNTKSPGVKEIIDKDLAPPVNILQKKGPKRLSAREKRNIMIRNVTQVLLKTTVMPFRWLKSSYRCFYCYDIFQEASELKEHQSVHKGEDFIEKAMNNYWEPVVYLDISEMRCKLCPENITDLYEMIDHLVTKHDVVFNKDIGMCMVAFKLDNLNIFCLSCGAAFFTFGPLLCHTNKAHKGTNVLLCEVCGQHFKHANLLRLHVKTVHEKASFPCTDCDEKFLTPAKLKTHQKSQHYVVKRYKCLVCTETFQSHYKRSRHMATEHENRKVVKCLQCPKTFIFRSMMMTHLRDTHLKVRNHMCSVCGWRAFNSNRLKNHMFKHSGEKNFKCEVCDKAFSTRKIMMAHFSRMHRAPQQPVVSYGNPYEPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -