Egri014579.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ectropis grisescens
Gene Symbol
-
Assembly
GCA_017562165.1
Location
chr09:15449185-15451236[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 4.9e-05 0.0027 18.1 0.8 1 23 87 109 87 109 0.98
2 21 1.1e-05 0.00061 20.1 0.5 1 23 115 137 115 137 0.98
3 21 0.00016 0.0088 16.5 0.9 1 23 143 165 143 165 0.99
4 21 0.00018 0.01 16.3 3.1 1 23 171 193 171 193 0.99
5 21 7.9e-05 0.0044 17.4 4.7 1 23 199 221 199 221 0.98
6 21 0.00087 0.049 14.1 0.2 1 23 227 249 227 249 0.99
7 21 0.0019 0.11 13.1 0.3 1 23 255 277 255 277 0.98
8 21 0.00027 0.015 15.7 1.4 1 23 283 305 283 305 0.98
9 21 0.00011 0.0061 17.0 1.3 1 23 311 333 311 333 0.98
10 21 0.00031 0.018 15.5 2.5 1 23 339 361 339 361 0.99
11 21 0.0001 0.0058 17.1 0.3 1 23 367 389 367 389 0.99
12 21 0.0022 0.13 12.8 0.6 1 23 395 417 395 417 0.98
13 21 9.1e-05 0.0051 17.2 0.5 3 23 425 445 423 445 0.97
14 21 0.00011 0.0061 17.0 1.3 1 23 451 473 451 473 0.98
15 21 0.00051 0.029 14.9 0.9 1 23 479 501 479 501 0.99
16 21 0.0001 0.0058 17.1 0.3 1 23 507 529 507 529 0.99
17 21 0.00035 0.02 15.4 0.3 1 23 535 557 535 557 0.98
18 21 2.1e-05 0.0012 19.2 0.7 1 23 563 585 563 585 0.98
19 21 0.00035 0.02 15.4 1.6 1 23 591 613 591 613 0.97
20 21 4.5e-05 0.0026 18.2 2.4 1 23 619 641 619 641 0.99
21 21 0.0045 0.25 11.9 0.1 1 21 647 667 647 668 0.95

Sequence Information

Coding Sequence
ATGGCGAGTGACCCTGAGCCTATGGACACAGCAGATACAAAGACTCGCTTGTCGCTAACTGATGACTCCAGCAGAGACGAGAGTATATCTGCAGCAGTTAATCCTCTGTCTCTAGAACAGGAACACAGAGACACCGTGTGCGGCACAACACCTCCATCCAGTGGTTTAAACGAACATGTCCAGATGCACTCCGAAGAATCATTACAATGTGAtaaaccaacaaaaaaatatcagttaacACATagtggagaaaaaccatttgaatgtgaaatGTGTGATTATAAAACATCACAAGCGTCCAGTTTAAAAGatcacaaattaacacatattggagaaaaaccatatgaatgtgataagtgtgattatagagcatcaaaagcatccaatttaaaacggcACATagtaacacatactggagaaaaaccttacaaatgtaatatgtgtgattatagagcatcacatgcAAGTGTCTTGAAAAtacacatattaacacatactggagaaaaaccatacaaatgtaatatgtgtgattatagagcatcacaatcATGCagtttaaaacaacacatattaacacatactggagaaaaaccatacaaatgtgatatgtgtgattatagatcATCTAGAAAAGAccacttaaaaaaacacaaagtaacacatactggagcaaaaccatacaaatgtgatatgtgtgattatataGCATCAAATGCAGGTGTCTTCAAAaaacacatattaacacatactggagaaaaaccatacaaATGTGATATATGTGATTATATAACATTAAAAGCATCCagtttaaaacaacacatattatcacatactggagaaaaaccatatgaatgtgatttGTGTGAATATAGAGCATCACATGCAAGCAACTTAAAAAGACATAAagtaacacatactggagaaaaaccatacaaatgtaatatgtgtgattatagagcatcaaaaGCATCCAATTTAAAACAGCACAAAGTAACACATACTGGACAAAAACCATACAAAtgtaatatgtgtgattatagagcatcacatgcAAGTGTCTTGAAAAAACACagattaacacatactggagaaaaaccatacaaatgtgatatgtgtgattatggaGCGTCACAAGCATCCAGTTTAAAACTACACATAttcacacatactggagaaaaaccatataaatgtgatatgtgtgaataTAGAGCAGCAAAGGCATCcagtttaaaacaacacaaattatcacatactggagaaaaaccatatggatgtaatatgtgtgattatagatcAACAAATgcatacaatttaaaacaacatatattatcacatactggagaaaaaccatacaaatgtaatatgtgtgattatagagcatcaaaaGCATCCAATTTAAAACAGCACAAagtaacacatactggagaaaaaccatacaaatgtaatatgtgtgattatagagcatcacatgcAAGTGTCTTGAAAATACAcgtattaacacatactggagaaaaaccatacaaatgtgatatgtgtgattacgGAGCGTCACAAGCATCCAGTTTAAAACTACACATAttcacacatactggagaaaaaccatatgaatgtgatatgtgtgaatataaagcatcaaaGGCATCCagtttaaaacaacacatattatcacatactggagaaaaaccatatgaatgtaatatgtgtgattatagatcAACTAATGCATACAGTTTAAAACAACATATATTatcacatactggagaaaaaccgtATGCATGTAATATGTGTGAATATAGAGCATCGCATGCAAGTAACTTAAAAAGACACAAagtaacacatactggagaaaaaccatacaaatgtaatatgtgtgattatagaacatCAAAAGCATCCAGcttaaaacaacataaattaacacatacttccacaaaaccatttgaatgtgatatgtgtgattataaagcATCACAAGCATTCagtttaaaacaacacatactggagaaaaactgtatgaatgtgatatgtgttaCTATAGAACATCACAAGTAG
Protein Sequence
MASDPEPMDTADTKTRLSLTDDSSRDESISAAVNPLSLEQEHRDTVCGTTPPSSGLNEHVQMHSEESLQCDKPTKKYQLTHSGEKPFECEMCDYKTSQASSLKDHKLTHIGEKPYECDKCDYRASKASNLKRHIVTHTGEKPYKCNMCDYRASHASVLKIHILTHTGEKPYKCNMCDYRASQSCSLKQHILTHTGEKPYKCDMCDYRSSRKDHLKKHKVTHTGAKPYKCDMCDYIASNAGVFKKHILTHTGEKPYKCDICDYITLKASSLKQHILSHTGEKPYECDLCEYRASHASNLKRHKVTHTGEKPYKCNMCDYRASKASNLKQHKVTHTGQKPYKCNMCDYRASHASVLKKHRLTHTGEKPYKCDMCDYGASQASSLKLHIFTHTGEKPYKCDMCEYRAAKASSLKQHKLSHTGEKPYGCNMCDYRSTNAYNLKQHILSHTGEKPYKCNMCDYRASKASNLKQHKVTHTGEKPYKCNMCDYRASHASVLKIHVLTHTGEKPYKCDMCDYGASQASSLKLHIFTHTGEKPYECDMCEYKASKASSLKQHILSHTGEKPYECNMCDYRSTNAYSLKQHILSHTGEKPYACNMCEYRASHASNLKRHKVTHTGEKPYKCNMCDYRTSKASSLKQHKLTHTSTKPFECDMCDYKASQAFSLKQHILEKNCMNVICVTIEHHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-