Ecre041089.1
Basic Information
- Insect
- Ectropis crepuscularia
- Gene Symbol
- zfpm1
- Assembly
- GCA_963693475.1
- Location
- OY856362.1:20767105-20770563[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.88 1.2e+02 4.9 8.8 1 20 108 127 108 129 0.91 2 15 0.012 1.7 10.7 0.3 1 23 188 210 188 210 0.91 3 15 0.00078 0.11 14.5 0.1 1 23 245 268 245 268 0.93 4 15 0.00013 0.018 16.9 1.6 1 23 274 296 274 296 0.98 5 15 0.022 3.1 9.9 0.2 5 23 306 324 304 324 0.97 6 15 0.2 28 6.9 0.7 1 23 330 353 330 353 0.86 7 15 8.5e-05 0.012 17.5 0.7 3 21 478 496 476 497 0.93 8 15 0.073 10 8.3 0.0 3 23 504 524 502 524 0.96 9 15 0.00068 0.097 14.7 0.4 2 23 530 552 529 552 0.95 10 15 9.1e-06 0.0013 20.5 2.8 1 23 557 579 557 579 0.97 11 15 1.2e-05 0.0016 20.2 0.6 1 23 629 652 629 652 0.95 12 15 0.047 6.6 8.9 1.0 1 23 658 680 658 680 0.84 13 15 0.096 14 7.9 0.1 1 23 686 708 686 708 0.97 14 15 0.0046 0.65 12.0 0.7 1 23 714 737 714 737 0.94 15 15 1.5e-05 0.0021 19.9 0.5 2 23 744 766 743 766 0.95
Sequence Information
- Coding Sequence
- ATGTTGGGCCTCTCATCTCATCATGGCCAGGTTGATGAGGAGACAGAGCTGCCGCAGGGGCTCTGCCGGGAATGCGCGGAAGACCTCTTAGCAGCCGTCACCTTCAAGCAATTGTGCCTCCACTCGGCCCTGTACTGGGAGGAGGCCACAGACTACCTCGCAAGCGTCGAAGAACCCACACCAGACGACAAAACCTTCTTCCTATTCTACCCGCAAGAAAAAATAACGCAAAACATCGCCGAATCTACCCCCACAGAACAGGACGCTTTGGCCATCTTGAACAGACCGAAACGCGTCAAGGTCAAAAGGAAATTCGTATCGTGCAAATGCCCCTACTGCGACAAACGATTCTGCTGCTTGAAAAACTTGAACGAACATTTCAAGTACAACACGCAGAGGTTCTGCGAAGAATGCGGTGACAGCGTCAACAAGAAGAGCTTACCCAAACATTTGTCCGTGAAACATGGGGTGAAAGTTTTTAGCTGCAAAAAATGTTGCGATATATTTCGGAGTCAAACAGAGGTTGATAACCATTGGATGAAGGATCACGGGCCGGGGACACATGCCTGCTCGTCTTGCGGGGTCAGCTTCGCAAACGAGCGGGGTCTGAGAGCCCACAGCACCCTACACTCGCTGTGCCACTGCCCCTGCGGCGCTACCTTCAAAAACGCCCGCTGCTTCAAGTACCACAAAACGATCTGCAACTCTATCCAGCTAAAAATGGAGACGACTTTCGAATGCGATTACTGCGGCGTGGTGTACGACAAGAAACCGTCCCTTCGCATACACATCGTCCAAAAACACCTCCACGTGCTCCCGTACGTGTGTCAAACTTGTGGGAAGCGTACTTCAACGCTACCTCATCTGAAATCTCACGAAGAGACTCACCAAACGGAGCGGAAGATTCTGGAATGCTATTGCGGAGCTAAATTCCGATCTGCGTTAGGCTACAAGCTGCATATGCGAATCCACACGGGATATAAGCCTTACAAGTGTACTATTTGCGaggaatctttcctatcggcgTCCAGGAGGTTAGATCACGTCAAAAGAAGGCACCAGACGTCGAAGGAAATGCCACACGGTTGCACGGAATGCACGGCCAAGTTCATAGTAGAGGAAGACGCGGCCCCGATCGGCGCATGCGTCGGTTGCGCGAGCGCCGCGCTCTCAGCGCAAGAGTTTCGCCTGTTCGTACGGAACTCAGAGAAACTGTGGTACAAAGCCCTCTCCAACCTCGCCAGCCTGGACCAGGAGCGCGAGGAGCGACTCAAGTCCATCTGCGCGTACGTCACACCCAACGACCTCACAGTCTTCACCGCCAAAGACTACACAGGAGGAGAACCCAAAGAAGTCGTCAACCGCTCCAAAACGACAGTCAAGAAGACGAAACGGAAAGCCAGGAGACACCACATGGGACCGCCGACCAATTGCCCTGATTGCGGCAAAACGTTCACTAGCCCCTTcttcctacacgagcatttgaAAAACAACGGACCCAGAACTGCTTGCCTCGTCTGCGGAGCGGTAGTGAGGCGAGGACAAGAACTGATAGACCACATGGTGACTCACAACGAGACCCTGATCAAATGTCCTCAATGCCCGAACTTGTTTAAAAACCAAGAAGAATTGAACCAGCACACGAGAGACTCCCACAAATCTGGCATCTTTATCTGCACGGATTGCGGACGAACGTTCCCACGTAAATCTACATTTGAGCACCATTCGCAAATGCATTTAGTGCGGACTTGCCGGAATTGTAACAGCCAATTTACAAATCGAATCTGCTACAGGGAACACAGGACGCAATGCGAACCGGACGCAAAGCCAGACAAGAGTTCTGTACCAAGAAACAGGCGCTCGAACATTCGCGATCCCGCTGAATTCATTTGCGATTACTGCAATAAGAAGTACACGACTCGGCCGCAACTAAAGAATCATATACTATGGATACATATGGACCACAGGCCGCATCAGTGCCAGTGGTGCGGCAAACGATTCTTCACGTACGCGAGGATGGCTGAACATTCCGTCGTTCACACTCGAGCCCGGAACTTTAGCTGCGACATTTGCGGCGCGAAATTAGTCTCCAAAATGGCCGCCGTCTATCACAGAAGACGGCACACGGGAGAGAAGCCTTACAAATGCGATGATTGCGACGCTTCCTTTATATCTTCGTCAAGGAGACTCGAGCATGCCAAGCGAAAACACAACAAGGGTACCAGGATCCAGTGTCTACAATGTCCGAATAGTTTTGTTAGGAAAAGCGAGCTTAAGAGGCATATGGATAAGGCTCATAGTACCGTGGAAGAAAAGAAGGATTTAAGTGATTGGAAGCCCGCAGAGAGTGTTCCCAGTGCCATTGACGAAGAGAAGAAAGTGTATATAAACGAGGATTGGAAGCTTTCGGAAATAACTCGATTTGAAATCATGTAG
- Protein Sequence
- MLGLSSHHGQVDEETELPQGLCRECAEDLLAAVTFKQLCLHSALYWEEATDYLASVEEPTPDDKTFFLFYPQEKITQNIAESTPTEQDALAILNRPKRVKVKRKFVSCKCPYCDKRFCCLKNLNEHFKYNTQRFCEECGDSVNKKSLPKHLSVKHGVKVFSCKKCCDIFRSQTEVDNHWMKDHGPGTHACSSCGVSFANERGLRAHSTLHSLCHCPCGATFKNARCFKYHKTICNSIQLKMETTFECDYCGVVYDKKPSLRIHIVQKHLHVLPYVCQTCGKRTSTLPHLKSHEETHQTERKILECYCGAKFRSALGYKLHMRIHTGYKPYKCTICEESFLSASRRLDHVKRRHQTSKEMPHGCTECTAKFIVEEDAAPIGACVGCASAALSAQEFRLFVRNSEKLWYKALSNLASLDQEREERLKSICAYVTPNDLTVFTAKDYTGGEPKEVVNRSKTTVKKTKRKARRHHMGPPTNCPDCGKTFTSPFFLHEHLKNNGPRTACLVCGAVVRRGQELIDHMVTHNETLIKCPQCPNLFKNQEELNQHTRDSHKSGIFICTDCGRTFPRKSTFEHHSQMHLVRTCRNCNSQFTNRICYREHRTQCEPDAKPDKSSVPRNRRSNIRDPAEFICDYCNKKYTTRPQLKNHILWIHMDHRPHQCQWCGKRFFTYARMAEHSVVHTRARNFSCDICGAKLVSKMAAVYHRRRHTGEKPYKCDDCDASFISSSRRLEHAKRKHNKGTRIQCLQCPNSFVRKSELKRHMDKAHSTVEEKKDLSDWKPAESVPSAIDEEKKVYINEDWKLSEITRFEIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -