Ecre039818.1
Basic Information
- Insect
- Ectropis crepuscularia
- Gene Symbol
- -
- Assembly
- GCA_963693475.1
- Location
- OY856362.1:9558981-9567429[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.022 3.1 9.9 2.4 1 23 126 149 126 149 0.96 2 17 0.019 2.7 10.1 0.1 2 23 176 197 175 197 0.96 3 17 0.019 2.6 10.1 1.8 2 23 220 241 219 241 0.94 4 17 0.0081 1.1 11.3 0.0 1 19 245 263 245 265 0.95 5 17 0.0091 1.3 11.1 0.4 2 23 275 297 274 297 0.92 6 17 8.5e-05 0.012 17.5 0.3 1 23 334 357 334 357 0.97 7 17 0.00011 0.015 17.2 1.4 1 23 364 386 364 386 0.99 8 17 0.22 31 6.8 3.1 1 23 392 414 392 414 0.98 9 17 0.051 7.3 8.8 11.2 1 23 420 443 420 443 0.95 10 17 0.043 6.1 9.0 0.7 2 23 450 471 449 471 0.94 11 17 0.0063 0.89 11.6 0.3 1 23 477 499 477 499 0.97 12 17 0.0047 0.67 12.0 0.1 1 23 509 532 509 532 0.95 13 17 2.7e-05 0.0038 19.1 3.1 1 23 538 560 538 560 0.96 14 17 2.4e-05 0.0034 19.2 1.8 1 23 565 587 565 587 0.98 15 17 0.26 36 6.5 2.4 1 21 753 773 753 778 0.88 16 17 3 4.2e+02 3.2 0.1 2 23 806 828 805 828 0.94 17 17 0.012 1.8 10.7 0.3 1 23 875 898 875 898 0.94
Sequence Information
- Coding Sequence
- ATGGGCACTGTGCCTTTAAAAGATTTGGAAAGTCTCATCAAACTCGAACCTGGGAACCGTGACTGGGGAATCACTATAACAAAGTTAAACCTGAAAAATGAAGGCAAAATAAAGAAAGAGAAGaaagaaaaagttaaaattgTTCAAGGCACAAAGAAAATACATGATGTTGTAATTAAGAAAGTTAAAAGAAGATATGTTAGAAATGAACCGATGGTTGTGGATTTATTGAAGAAACACAAGATATACTGCAAACAACCGCGTGAGCCTGTTGTAGACCACGAGAGGGAATTGAGTAAACACAGATTCAATGTGAGAACGATCATGAAGAAATCTAATGCTACTCCGTTTGGAGTTTACCATGTGGACGACGGTTTTGCTTGCTGCTTCTGCGAGAAATTTTTCAAAATAGCCACAGACCTAAAGATCCACACAATCACGACACACGCTGATAAGATAGATACATTTAAAGAGAAATCCACTTCAATCTTCACGTACGTAGTTAAACTAGACATCACAGATCTGATTTGTAAAATTTGCAACACAAAAATTAAGACTGTGGAAGAACTAGTCGTGCATTTGCAATCACATAACATTGTACTCAACACGGATATAAAAAATCAGAtagtttcttttaaatttgactCGGACGCTTTATGCTGCGTATATTGTggtaatgaatttactaattTCAAATTCTTGTTGGACCATATGAATGAGCATTACGATAACTACGTTTGCCAAGATTGTAATGCTAGCTTTATAAACTATAGGATGTTGGTAGCCCACGCTGAGGGTCAGGATCTTACTATCGGAGAAGTGAAATGCCCGCTTTGCGATGAAGTATTCGAAAAGTACGCTAAGTATAAACATCACGAGTTATTAGCACATACAGGCTTCGATTTAATTACACATGAATGCATTTATTGCAAAGAACAATTAAATTCCGACGAAAGGTTAAGAGAACACGTAGACGACAAACATGAAGGAAAACACCATTACGAATGTGGCAAATGCAAAAGAATTTACGATACGAAGAGTTTGTTGATTGCTCATGTAAAGAGAGTGCATTTACAAGAAGATAAGCATTACAAATGTGATTTGTGTGATCGGAGTTTTTATACACGTCAGATTCTACAGCAGCATTTGCGGATACATTCAGAGACGAGGCCATTCCAGTGCGATATTTGCGCAGCAAGATTCAAATGTAAGGAAACAATGAAGCAACACATCTTTACGCACTCGTTAAAAGGGAAGCATAAATGCTTAATGTGCGAAGAATCATTCCATCGGTATTCGCATTTAAAGCATCATATGCATCAGGATCACTTGAACGATCCTTGGACGAAATGTACAGTTTGCGGCCGAGACCTCTACAAGTCCCAAGTAAAGAGACACATGGCATTAAGACATTCAGAATTGAGAACATTCACATGTTCTGTTTGCGATATGCAGTGCGAGTCGAAAATAGCATTGGTCGTGCATATGAGCGGACATCCGAATTTAAAACCTGAAGCGAAGAAATTCGAATGCCTTGCTTGCGGCAAAGTCTTCGATAAGCCAATGTATGTGACCAGACACGCGCAAAGAGTGCACTTACTGGAGAGGAGATTTGTCTGTGACCACTGTGGCAAACGATTTGCCGATTGCACTACTCTGAAGAACCATTTAGCTTTACACGGTGGTCCCACATTCCAGTGCTTCGGTTGCACCAGGGTGTTTAAGACGAAGAAAAGTTTGGCGAACCACGCCAGAAATCATCTGGAGGAGAAAAAAGTGAAATGCGAAATTTGTTCTCGACACAGCAGCAGCGATGAAAGCGACACTCCCCTCATTTTCGTTGAAGAGAACAGGATCACTCTCGACAGGAGAGTCAATTTCACTTCATTCATATCGATACTCCCAGCTGACGCTAAAAAGAAATCCTCATACAACAGCAGCGCTGAAAAACCAAAGAAAGCCGAGAAACATAAAGAGAACATCATAGATGACATTATATTCGATGATGGTATTGATCACGAACCGTTGGTACCTATTCCTTTACCCATGCCTGAAGAAGAACCCAAACCTAAACGCGAGAAACGCAAGACATCAGTCAAACCAAAAACTAAACGCAAAACTCCAAGGCCGAGAGATACCAGCGAGGATAAAGTTAGGAAGCGACCAGTCACAGAAATAGAATGGCATTTAGAAAACATCAAAAATGTCTTAAACTGCTCGAATGCAACTCCGATCCGTGCGAGGGATAACGGCGGCTATCAGTGCAGCTACTGCAAACAGCAGTTCGAGAAGCTAACAGACTTAAAATTCCATACGCTAACATCGAAATCCCACAAAAAGAAGAAGCCAGATTTCTTGAAGATACACTACGCTTCGCTGTCGAAACATATAGTGTACTTGGACATAACATCGTTGCAATGCACTGTGTGTCAGCTCGAGATGATAAGCCTGGAGGTTCTAATGGAACATTTGAAGACGGATCACGATGAGAACATGCATCTGGTGATCAAGAATCAGATAATGCCGTTGAGGGTTGTGAATGAGAAACTGACTTGTAGCGTCTGTGGCACAGAGGTGGAGTTCGAAGGAATACAAGAGCACATGTCACAGCATTACAGGAATTATGTGTGCGAATTTTGCGATACTAGCTTTGTGATTCGGAGCAAGATGATCGAGCATAAGAAAGCTGTTCACGATCtgtaa
- Protein Sequence
- MGTVPLKDLESLIKLEPGNRDWGITITKLNLKNEGKIKKEKKEKVKIVQGTKKIHDVVIKKVKRRYVRNEPMVVDLLKKHKIYCKQPREPVVDHERELSKHRFNVRTIMKKSNATPFGVYHVDDGFACCFCEKFFKIATDLKIHTITTHADKIDTFKEKSTSIFTYVVKLDITDLICKICNTKIKTVEELVVHLQSHNIVLNTDIKNQIVSFKFDSDALCCVYCGNEFTNFKFLLDHMNEHYDNYVCQDCNASFINYRMLVAHAEGQDLTIGEVKCPLCDEVFEKYAKYKHHELLAHTGFDLITHECIYCKEQLNSDERLREHVDDKHEGKHHYECGKCKRIYDTKSLLIAHVKRVHLQEDKHYKCDLCDRSFYTRQILQQHLRIHSETRPFQCDICAARFKCKETMKQHIFTHSLKGKHKCLMCEESFHRYSHLKHHMHQDHLNDPWTKCTVCGRDLYKSQVKRHMALRHSELRTFTCSVCDMQCESKIALVVHMSGHPNLKPEAKKFECLACGKVFDKPMYVTRHAQRVHLLERRFVCDHCGKRFADCTTLKNHLALHGGPTFQCFGCTRVFKTKKSLANHARNHLEEKKVKCEICSRHSSSDESDTPLIFVEENRITLDRRVNFTSFISILPADAKKKSSYNSSAEKPKKAEKHKENIIDDIIFDDGIDHEPLVPIPLPMPEEEPKPKREKRKTSVKPKTKRKTPRPRDTSEDKVRKRPVTEIEWHLENIKNVLNCSNATPIRARDNGGYQCSYCKQQFEKLTDLKFHTLTSKSHKKKKPDFLKIHYASLSKHIVYLDITSLQCTVCQLEMISLEVLMEHLKTDHDENMHLVIKNQIMPLRVVNEKLTCSVCGTEVEFEGIQEHMSQHYRNYVCEFCDTSFVIRSKMIEHKKAVHDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -