Ecre039771.1
Basic Information
- Insect
- Ectropis crepuscularia
- Gene Symbol
- -
- Assembly
- GCA_963693475.1
- Location
- OY856362.1:9175468-9187145[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.016 2.3 10.3 0.6 2 23 33 55 32 55 0.93 2 16 0.071 10 8.3 0.1 1 23 76 98 76 98 0.94 3 16 0.0046 0.65 12.1 0.1 3 23 104 124 103 124 0.96 4 16 0.54 77 5.5 0.4 3 23 164 184 162 184 0.96 5 16 0.65 93 5.3 0.1 2 23 211 233 210 233 0.92 6 16 1.3 1.8e+02 4.3 0.4 3 23 283 304 281 304 0.93 7 16 3.5 5e+02 3.0 0.2 2 23 331 353 330 353 0.90 8 16 1.4 1.9e+02 4.3 0.1 3 23 477 497 475 497 0.94 9 16 0.013 1.8 10.7 4.4 1 23 519 541 519 541 0.97 10 16 0.0002 0.028 16.4 0.9 1 23 545 567 545 567 0.98 11 16 0.00021 0.03 16.3 0.9 1 23 572 595 572 595 0.96 12 16 0.00034 0.048 15.6 1.5 1 23 601 624 601 624 0.97 13 16 0.026 3.6 9.7 1.3 1 23 631 654 631 654 0.95 14 16 0.00079 0.11 14.5 1.5 1 23 660 682 660 682 0.95 15 16 1.7e-06 0.00024 22.8 0.6 1 23 688 710 688 710 0.99 16 16 3.6e-07 5.2e-05 25.0 2.6 1 23 716 738 716 739 0.96
Sequence Information
- Coding Sequence
- ATGATGGCTGACCATCCACTCACTCTCTCAGAAAAACTGCACGTACTAAAAAACTCTCGACCGGGCGATACCGTCAAAATAGACGTTACCGATCTCAAATGCACTATATGTCAAGAAAAAGTTAACGATATTCAAAACTTAACAAATCACCTTCATGAAATACATAGTAAATCCATCAATGAAACATTTGATACTGGTGTCGTTCCTTACTTACTAAACGATGGATTTACTTGCGCGATATGCAATGTATCGTTCGAAGGGTTTATCGCTTTGAATACTCACGTGTTCCAACATTTCCCTAAGAACCCTTGCTCTGTATGCGGAGTTATGTTCTCCGCAGAAAGACTTAAAAAACATATGCTCAGGGCACATGGgaaaaatcagaaaataaaGCTTATGCCCAATTCCTTCGACGGTCGACATAACGCGATCATCATCTTTGAATGTTCTAACGTTTCTCCTTTCAAGTGGCACAGAAACGTGTTCGGTTGTGCATACTGTTCATTCACCTCGGCCGATTTCTCAAATATCAAAACCCATTTGGAAAATCACTCTGCTAAGACGGAAAAGATCAAAATACTCCGCAATTCGCGACCCACTGACGTTATCAAAGCGGATGTTACCGATTTGATATGTGGCATCTGCCAAAAAAACATCGAAGACGTTACATCATTAATGTATCACCTTAAAGACATACACGGGAAGCCtattattcaaaaatatggTTCTGAGTCCCGCAAACGGAAGCTGTTTATCGGGAAGTATAACGACGCCAGGGATAACGCGGCGATAATTCTTGAATGTTCCAACGCTTGTCCGTTTAAATGGCGCAAAAACGTTTTCGGTTGTTCTTACTGCAAGTACACGTCCCCAGATTTCGGCGTATTTAAAACTCATATCGAGGAACGCCATCCGGTCAAATCTGAGAGGATCGAATTCTTCCGTAACTCTCGACTCGCGGACACTGTCAAAGCTGATATCGGCAATTTGAAATGCGATCTCTGCGAAGAAAGCATTCAAGATATGCAGACTCTCATGGATCACCTTACCGAAAAACACAATAAGCCCATAATAAAAGAATACGACTCTGGCATCGTAGCCTATCTGTTAAACGAAGGAAGAAAAAAAGAAGCAACTAAGATAAAACAGGAGGAGTCAGACTCCGAGAATTACTCGAGTCTCGCAGCGGAGGCTACCGACGGCGTCCTGAGGAGGGCGGCCTTCAGAAATAACATCACCACCATCCTCGACTCATGCACAGCCTACCCCTTTAAATACAGAAAAGGCACCTACCTCTGTTTCTATTGCAAGATGACTTTCCTAGAACCAGAGAAACTTCGGGAGCACAACACTCATCACCATACAGAATCCCATCAACTCAAACCAAAGAAATATGAACCTCTAAAGATGGACTTTTCGAACACCGCCTGCAGACTTTGTAGCATCACGATCGAAGATTACGCGACGTTGAAAGCACACTTAACAGAACACGGGAAGACAATTGATTGTACATGGGGTGACAGTGTGTTACcatacaaactaagcaaagatgaGCACCGCTGCCAAGTCTGCGGCAAACGATACGAAATGTTCTTAAGCCTCCACAAGCACATGAACGAACATTATGAGCATTACATCTGCGAGACTTGTGGGAAGAGATTTGCGACGTCGCAACGAATGGTGAACCATTCTCGGACGCACGAACGCGGCATATTTCCTTGCAAGCATTGCACTGAGACCTTCCAATCTTATTCAGCTCTCTACGCTCACATAgctaaaatacacaaattaaacAAACGGTACAAATGCCCGATATGCGATGAGAAATTCGGCTCCTACAAACATAGATTGAAACACCTAAACGTGGTTCATGGAGAGAAAACTGCCGTGTTTCCTTGCCCCTCGTGTCCAAAAGTCTTCGATTTGTGCAGCAGAAGAACGGCTCATATACGATTCCAGCACTTGCAAGAGCGGAATCATATCTGCTCTGTGTGCGGAATGAAGTTTTTTACTAACTACGAACTCCAGGAGCATTCAATCAAGCATGGCGGAGAAAGGATCTATCAGTGCGATGTTTGTAAGAAGGCGTATGCTAGGCTGAAAACTCTAAGGGAGCATATGCGGATACATAACAATGATAGGAGGTTTGTCTGTCCTGTTTGTGGACAGTCTTTTATTCAGAATTGTAGCTTGAAGCAGCATATGAGGGTGCATCATCCGACTCACTTGAAAGATGTGTTCTGA
- Protein Sequence
- MMADHPLTLSEKLHVLKNSRPGDTVKIDVTDLKCTICQEKVNDIQNLTNHLHEIHSKSINETFDTGVVPYLLNDGFTCAICNVSFEGFIALNTHVFQHFPKNPCSVCGVMFSAERLKKHMLRAHGKNQKIKLMPNSFDGRHNAIIIFECSNVSPFKWHRNVFGCAYCSFTSADFSNIKTHLENHSAKTEKIKILRNSRPTDVIKADVTDLICGICQKNIEDVTSLMYHLKDIHGKPIIQKYGSESRKRKLFIGKYNDARDNAAIILECSNACPFKWRKNVFGCSYCKYTSPDFGVFKTHIEERHPVKSERIEFFRNSRLADTVKADIGNLKCDLCEESIQDMQTLMDHLTEKHNKPIIKEYDSGIVAYLLNEGRKKEATKIKQEESDSENYSSLAAEATDGVLRRAAFRNNITTILDSCTAYPFKYRKGTYLCFYCKMTFLEPEKLREHNTHHHTESHQLKPKKYEPLKMDFSNTACRLCSITIEDYATLKAHLTEHGKTIDCTWGDSVLPYKLSKDEHRCQVCGKRYEMFLSLHKHMNEHYEHYICETCGKRFATSQRMVNHSRTHERGIFPCKHCTETFQSYSALYAHIAKIHKLNKRYKCPICDEKFGSYKHRLKHLNVVHGEKTAVFPCPSCPKVFDLCSRRTAHIRFQHLQERNHICSVCGMKFFTNYELQEHSIKHGGERIYQCDVCKKAYARLKTLREHMRIHNNDRRFVCPVCGQSFIQNCSLKQHMRVHHPTHLKDVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -