Basic Information

Insect: Ectropis crepuscularia
Gene Symbol: su(Hw)
Assembly: GCA_963693475.1
Location: OY856359.1:9462294-9484674[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.2 1.7e+02 4.5 4.9 1 23 71 95 71 95 0.94

2 12 0.008 1.1 11.3 0.0 2 23 103 125 102 125 0.96

3 12 9.3e-06 0.0013 20.5 0.9 1 20 130 149 130 151 0.95

4 12 9.9e-07 0.00014 23.6 0.8 1 23 162 185 162 185 0.96

5 12 0.27 39 6.5 2.7 1 23 191 216 191 216 0.96

6 12 0.00024 0.034 16.1 0.3 1 23 223 245 223 245 0.97

7 12 0.0018 0.26 13.3 0.2 1 23 250 272 250 272 0.98

8 12 7.2e-06 0.001 20.9 0.3 1 23 278 300 278 300 0.99

9 12 0.00026 0.036 16.0 0.3 2 23 309 331 309 331 0.96

10 12 1.1 1.6e+02 4.6 0.9 8 23 349 364 338 364 0.85

11 12 1.4e-05 0.002 19.9 1.3 2 23 373 394 372 394 0.97

12 12 3.6 5.1e+02 2.9 0.3 3 23 402 425 401 425 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.2	1.7e+02	4.5	4.9	1	23	71	95	71	95	0.94
2	12	0.008	1.1	11.3	0.0	2	23	103	125	102	125	0.96
3	12	9.3e-06	0.0013	20.5	0.9	1	20	130	149	130	151	0.95
4	12	9.9e-07	0.00014	23.6	0.8	1	23	162	185	162	185	0.96
5	12	0.27	39	6.5	2.7	1	23	191	216	191	216	0.96
6	12	0.00024	0.034	16.1	0.3	1	23	223	245	223	245	0.97
7	12	0.0018	0.26	13.3	0.2	1	23	250	272	250	272	0.98
8	12	7.2e-06	0.001	20.9	0.3	1	23	278	300	278	300	0.99
9	12	0.00026	0.036	16.0	0.3	2	23	309	331	309	331	0.96
10	12	1.1	1.6e+02	4.6	0.9	8	23	349	364	338	364	0.85
11	12	1.4e-05	0.002	19.9	1.3	2	23	373	394	372	394	0.97
12	12	3.6	5.1e+02	2.9	0.3	3	23	402	425	401	425	0.81

Sequence Information

Coding Sequence: ATGCCACCCAAACTTAAAAAGCTCGGACGTCCATTAGGGTCGAAAGGAAAAAAATCTACAACTGTTTTCTCAACGATTAAAAAGGTGCGAACGATTAATAAAAAGGGGATCAAAATTGAAAACTCGGGTAATACTGATAACAACATACTCGAGTATAATGTTCCGGACTCTAACCTGTCCATACTAAATATTCAAGATGAAAAGattattTACCACTGCAAAAAGTGTTCCAATAAAAACTTTAAGTTTGAGAAGAATTACAAAGAACACTTATTACTAGAACATTCAACAGTGCCTGGCAGTGTAAAGTGTCCAGATTGCCCCATAGTGTGTCCTACCAAGGCGATATTGACTGCACATATTGCCAAAGCTCATGACCGAGATGAATTTCCTTGTCAACACTGTGGAAAGAAATTTGTCCGACAGGCTCATGTGCTACGACATATGGCCCAAAAGGGTTGTGATGGTGGTAAAGTTGCTTCATTCCCTTGTGAAATATGCAATGCAACATTCACTAGAAAAGACAATTTGATTGTCCATCTTCGCCATATGCATGTGAAGATGCAATTTTATCAATGTAAAGAACAAAATTGTGGATTTTCAAGCAAGAATTTCACTAAGATGATAAGGCATTGGCATTCGATACATGCAGAAGTACCACACCGGTTTGAATGTGACCACTGTGGTAAATCCACAATGTCTCGGGCTGCCATGGCTAAGCATCTGGAAATACATGGGGAGAAAAAATATTCTTGTGATGtgTGTGGGTACAGTACGTACACTATCGAGGTGATGCGTCGCCACATCCTGACGCACGTGGAGAACAAGCCGTACAAGTGCGCCGTGTGCGGCACCTCGTACATCCAGCGCGCGCAGCTCGACCGACACATGGAGAAACACGACCTGGACGGGAACGAGGCCGCCGTGTGCGACATCTGCGACGAGGGGTTTAGCAACCGAGCCAGgTTGATAGTCCATAAAAGGAAAAAGCACGAAGGACTGACCAAACAGTGTTGTCCGTTCCATGATTGCGTTTTCGCTAAAAAAGAGTTTAGCACCGAAGAGCAATATGTAAATCATATAAGCAAACATTTGTTGCTGAAGACCAAACTGTGGTCGTGCGAGGTGTGCAAGAAGACGTTCACGTCGGAGATGAACATGCGCCGTCACCTGAGCACGCACACGCTGGACCGGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCGTACGTGCGCGGCCAGCAGCTGGTGCGGCACGTGCGCAAGTACCACGACGAGGTGTTCCGCTCGCACCTGGCGCACGTGCGGAACGTGCTCGTGACGAACCCGAAGAGCGAACGCGTGACGAAGTCGGAACTGGAGTCGATCCTGACCTTGCTGGACGCGGAGTCGGAGCGCATCCTCGAGGGCTACAGCGGCGCCGACGTGCTCTACGGGGGCATGCAGCCCGCCGCCGACGCAGAGGATGACGAGGATTCTCCGCTGATGTCTGAGAACATGCTGGCTGATAACTTGGTGAAACTTCTGGAACATCTGATCGACAAAGACACCCTACAATGCCTCGGCTGGCCGGATGAACCAATTGACACTATCTTGGAACGAGTGATCGAGCAGTGCGGTGCGAAGCCGGCCGACCGCGACATGTGGTCGCGCGTTCAGCGCCTGCGCGAGAACGCCAAGCATCTCTTCCTATATGTGGTGGATGACAAAAACGTGTCGATGATGCTCGGCACTCATACCATCGACCAGATCGTGAAGCACATTCTGTCTCAGGTGGATTCGGACAGGGCGAACGCCAGGCGCGACAAAACCGCGTTCACGTCTGCTAACGAAATCGAGATCGAACTCGACGTTTCGTAG
Protein Sequence: MPPKLKKLGRPLGSKGKKSTTVFSTIKKVRTINKKGIKIENSGNTDNNILEYNVPDSNLSILNIQDEKIIYHCKKCSNKNFKFEKNYKEHLLLEHSTVPGSVKCPDCPIVCPTKAILTAHIAKAHDRDEFPCQHCGKKFVRQAHVLRHMAQKGCDGGKVASFPCEICNATFTRKDNLIVHLRHMHVKMQFYQCKEQNCGFSSKNFTKMIRHWHSIHAEVPHRFECDHCGKSTMSRAAMAKHLEIHGEKKYSCDVCGYSTYTIEVMRRHILTHVENKPYKCAVCGTSYIQRAQLDRHMEKHDLDGNEAAVCDICDEGFSNRARLIVHKRKKHEGLTKQCCPFHDCVFAKKEFSTEEQYVNHISKHLLLKTKLWSCEVCKKTFTSEMNMRRHLSTHTLDRPRRCMYCVSARAYVRGQQLVRHVRKYHDEVFRSHLAHVRNVLVTNPKSERVTKSELESILTLLDAESERILEGYSGADVLYGGMQPAADAEDDEDSPLMSENMLADNLVKLLEHLIDKDTLQCLGWPDEPIDTILERVIEQCGAKPADRDMWSRVQRLRENAKHLFLYVVDDKNVSMMLGTHTIDQIVKHILSQVDSDRANARRDKTAFTSANEIEIELDVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00635677;
90% Identity: iTF_00635677;
80% Identity: -