Basic Information

Insect: Ectropis crepuscularia
Gene Symbol: -
Assembly: GCA_963693475.1
Location: OY856338.1:29029590-29068340[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.023 3.2 9.9 0.2 2 20 157 175 156 177 0.96

2 10 0.06 8.5 8.5 5.2 1 23 218 240 218 240 0.97

3 10 0.00023 0.033 16.1 1.9 1 23 330 353 330 353 0.97

4 10 4.2e-06 0.00059 21.6 1.6 1 23 375 397 375 397 0.98

5 10 3.3e-06 0.00047 21.9 3.9 1 23 404 426 404 426 0.98

6 10 3.9e-07 5.6e-05 24.8 1.7 3 23 440 460 438 460 0.96

7 10 8.2e-06 0.0012 20.7 0.6 1 23 466 488 466 488 0.99

8 10 4.3e-07 6.1e-05 24.7 2.5 2 23 495 516 494 516 0.96

9 10 1.5e-07 2.1e-05 26.2 1.5 1 23 522 544 522 544 0.99

10 10 0.14 20 7.4 0.1 1 12 550 561 550 567 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.023	3.2	9.9	0.2	2	20	157	175	156	177	0.96
2	10	0.06	8.5	8.5	5.2	1	23	218	240	218	240	0.97
3	10	0.00023	0.033	16.1	1.9	1	23	330	353	330	353	0.97
4	10	4.2e-06	0.00059	21.6	1.6	1	23	375	397	375	397	0.98
5	10	3.3e-06	0.00047	21.9	3.9	1	23	404	426	404	426	0.98
6	10	3.9e-07	5.6e-05	24.8	1.7	3	23	440	460	438	460	0.96
7	10	8.2e-06	0.0012	20.7	0.6	1	23	466	488	466	488	0.99
8	10	4.3e-07	6.1e-05	24.7	2.5	2	23	495	516	494	516	0.96
9	10	1.5e-07	2.1e-05	26.2	1.5	1	23	522	544	522	544	0.99
10	10	0.14	20	7.4	0.1	1	12	550	561	550	567	0.85

Sequence Information

Coding Sequence: ATGACCGACATGGCTTCTAGCAACCAAGTTGAAATAAAGATCGAGAAACTATGCCGCACATGCTTATCGAAAGACAATGAATTAAATTCTCTTTTCGATGTCACAGTGGGTTCTGTTTCATTAGATTATGTGGTAACGGCAATCACCGGATTAAAGATTCGTAAAGGAGATGGATTACCCTCAACAATATGTAGTGAATGTAAAGACAAAGCGGAGAAGGCATATGATTTCAAGAAAAAGTCACAAGAGGCTCACATCTCACTTAGAGGCTTCTACAAAAAAGATACTAAAGTACTACAGAAAACAGAAGATGTCAACATCAAAGAGAGCAAGCCAATGGATGTCAAAACTGAACACTTAATGTacaatgataatgatgatttCTCTGATGCTGACTATAGCTTTCCACTTAGCAATAACCCGGATGATACTAGTAACATTGTTGAATTTGAAGATGTGAATGGTACATACTGTCCCATTTGCGGAACCTGCTACGATGGCGATCAGAGCCTGTCGAAACATATGTGGGAGTTTCATGCTGATTTGATGGGTCCAAAAAAAAGAGGACGGCCTAAAAAACTAATGACAacgACAATTTTAAACAAGTTATCAGAAAACGGTCTACTGATATCATCATCGAATGGAAAAACTTATAAGTGTTCTTTTTGTAAGAAGCAGACTAAAACCAGAAATGAACTCGGTCTTCACATGTTTCACCACAAAGATACCAAAGTACTTTGTTGTATTGTCTGCAAGAAAATGTTTATGAAAAAGAAATATTTCAACATGCATACCTGTCCTAGCAGTCACACTGTTCTTCAATCTGAAAATGATACATCGAATGTACCAAACGAGAAAAGCGGAAAGATGGGTTTGGCTACGGAGATGTTGTTACAGGAGCTGTATGATCCAAATGATGATATGTTGTTCGCCTCCGTGAAAACAGCAGCGCGTCACAGATCAGTATGTAAACAAATAGAAAGAATGCACAAATGTACGACTTGTGGCCTCAAATTCGCCTACGAAATCTCTCTAAACAAACATATACTGCggtaccatcagggacagagtGTGTCAGTATCGTTCATGAGCCGAAAGCAAAAGGTGGAAGAGAACGTTCAATATCAATGCGATACGTGCCACAAAATGTTCGTTAGGAAAGATGCACTCGCAAAACATGCAAAATTACACATGCCGAATCAAAAACTTTTTGAATGCGACATATGCCACAGAAAGTTCAATAGGAGTGATAATTTAAGAACACACAAAAAGATCCATGACGTCGACCGAGTGAAGCCGCCGGCGAACAACTGTCTGTGCCTGTACTGTGGCCGTGGGTTCTCCAACTCGTCCAATCTGATTGTGCACATGCGTCGACATACCGGGGAGAAGCCTTACAAGTGTGACTTCTGTGCTAAAGgtTTTCCCAGATCATCAGATCTCTTAGTTCACAGAAGGTCACATACTGGGGAAAAACCTTGTGTCTGTCGTATTTGTGGCAAAGCGTTCTCCCGTAGCAATAAATTGTCGAGGCATATGCGCGTACACACTGGACAGAGGCCGTACAAGTGCACGTACTGCGAGAAAGCATTCTCTCAGAGCAACGATCTCACTCTTCACATCCGACGGCATACGGGAGACAAACCTTACGTGTGTGAAGTGTGTGGCGAGAGATTCATTCAgatgGATTTGAGAAAAAAAGAGGAGAAAATTCTACAATGGTTAGCTCAGTGTGACACTGAATCTCTACCTGATGCTCAGCAACAGTCATCGGACTCCGAGGAAGATAACTTCGAAACAGAAATCCATATCAATACCGACGAAGCTGAGGAAGATTCTGCGGTAtcgtctgatgatgatgaaataaagtCGTGTACCTACTATCTACAACTCATGACCAACCAGAAATCAACAGTGTATCAAATAAACCAGAAATAA
Protein Sequence: MTDMASSNQVEIKIEKLCRTCLSKDNELNSLFDVTVGSVSLDYVVTAITGLKIRKGDGLPSTICSECKDKAEKAYDFKKKSQEAHISLRGFYKKDTKVLQKTEDVNIKESKPMDVKTEHLMYNDNDDFSDADYSFPLSNNPDDTSNIVEFEDVNGTYCPICGTCYDGDQSLSKHMWEFHADLMGPKKRGRPKKLMTTTILNKLSENGLLISSSNGKTYKCSFCKKQTKTRNELGLHMFHHKDTKVLCCIVCKKMFMKKKYFNMHTCPSSHTVLQSENDTSNVPNEKSGKMGLATEMLLQELYDPNDDMLFASVKTAARHRSVCKQIERMHKCTTCGLKFAYEISLNKHILRYHQGQSVSVSFMSRKQKVEENVQYQCDTCHKMFVRKDALAKHAKLHMPNQKLFECDICHRKFNRSDNLRTHKKIHDVDRVKPPANNCLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCAKGFPRSSDLLVHRRSHTGEKPCVCRICGKAFSRSNKLSRHMRVHTGQRPYKCTYCEKAFSQSNDLTLHIRRHTGDKPYVCEVCGERFIQMDLRKKEEKILQWLAQCDTESLPDAQQQSSDSEEDNFETEIHINTDEAEEDSAVSSDDDEIKSCTYYLQLMTNQKSTVYQINQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -