Ecre039776.1
Basic Information
- Insect
- Ectropis crepuscularia
- Gene Symbol
- -
- Assembly
- GCA_963693475.1
- Location
- OY856362.1:9210540-9221022[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00012 0.016 17.1 0.8 1 23 36 58 36 58 0.98 2 15 6.7e-07 9.4e-05 24.1 0.5 1 23 62 84 62 84 0.97 3 15 0.0086 1.2 11.2 1.2 3 23 92 113 91 113 0.94 4 15 0.0044 0.62 12.1 4.2 1 23 118 141 118 141 0.96 5 15 0.072 10 8.3 1.4 1 23 147 170 147 170 0.97 6 15 2.5 3.6e+02 3.4 0.0 1 12 176 187 176 189 0.83 7 15 2.3 3.3e+02 3.5 0.1 2 23 330 352 329 352 0.90 8 15 0.0033 0.47 12.5 0.1 1 23 373 395 373 395 0.95 9 15 0.00019 0.027 16.4 1.1 2 23 400 421 399 421 0.95 10 15 5.6e-05 0.0079 18.1 1.9 1 23 428 451 428 451 0.98 11 15 0.00019 0.027 16.4 1.7 1 23 456 479 456 479 0.98 12 15 0.00093 0.13 14.2 0.8 1 23 485 508 485 508 0.97 13 15 2.2e-06 0.00031 22.5 1.1 2 23 515 536 514 536 0.96 14 15 4.7e-07 6.7e-05 24.6 1.6 1 23 542 564 542 564 0.99 15 15 0.00034 0.048 15.6 4.9 1 23 570 592 570 593 0.96
Sequence Information
- Coding Sequence
- ATGAATAACATAAAATACCTTATGAACCATCTCGTCGTAGAGCACGAAAGAAGCATACACAGCGAAGTAGATATCGGTGTTCTACCCTTTGTTCTGATGGATGGCTACAAATGTCCCGATTGTAACTCATCTTTCGATAACTTTTTACAGTTACGGAACCATTTGAACGAACATTACCCCCGTTTTGTTTGTGGCCGCTGTGGTAAAACGTTTACCAATGAGACGAACCTCAAAAACCATCTCGAGATCCACGACAAACCAGCCATCGTCGCTTGTTCCAAATGCGGCGAAGAATTTACTTCCAAATCACGTCAGCGCACCCACGAGAAAAATGAACACGATCTCTTCCCATACAAATGTCCACATTGCAATATGACATTCAAATTGTACACGCAAAGAGTTCAGCATATGAATCAATACCACGATATGAATATCACGTACCCTTGCGATCTTTGCTCGGTGGTTTGCTCATCTAGCAGCATTCGATCGAGGCATATGAGACGAATGCACACCAACGAGAGACGGTACATGTGTTCAGTCTGTGGATACGTCAGCATAGATTGGATCAAAACAGGAGTGATAGTAGAAAAAACGCAGACTGacgaatcaaataaaaatacaacagAAGTGATCAAAGTAGAACCCACCTTAACTGACGGGGTCAAAGATGAACAAATTGAAATTAATGCATCCAGGCTCAAAGATCTAGccgataaaaaaataactgtcaaaaaaaagaaaagaacaaaaacagcAGACATCAAATTTGATGATTCGCGCTATAATGCGGCAATTGTCTTAGAATGCTCTAACGCGTGCCCGTTCAAACTTTATGACAATTCTTTTGGTTGTGCTTTCTGTTCCTTCAAATCTCCAGATTTTCTCGCCATCAGAGACCACTCAAAAGCCCATCAATCCAAAGACTTTGCGAAATTTTTACGAGATAGAAAGACCGATATAGAATGCAAAGCTGACGTTACAGATTTAAGATGCGTCCTATGTCAAATTAGTATGAAGGATATTTCAACTCTGTTTGAGCATCTCATTGATGCTCATGAAAAACCGTTGTTGCGAAAATATAATGTAGGTATTGTACCGTATTTGCTTTGTGAAGGGTACGCATGTGCCGATTGCGGCGTTAGCTTCGATCTGTTCACCAGTCTAAACAAACACGTCGTCTCTCACTACCCTCAATGTATTTGTTCTGAATGCGGTCAGGCATTCTTTGGATCATCATCGTTAAAAAGTCACTTGAAAGGACATGCGAAGCAAGCAAGACAGTATAAATGCGGCGTTTGTAATGAATCATTTCCCACTTCTCACCTTAAACGGAAACATATGATGTCCGAACATAACATGGCTACTTACAAATGTCCTTATTGCACGGAAACGTTCATACGTTTCAGCCAAAGAGTGACACACTTGAACAAGCTCCACGGAAAAAATATCAACTACCCGTGCAAGTTATGTGCCAAAGTGTTCACAAATACGACATCTAGATCAATACACATGAGGTACGTTCATATCAAGAACAATCCCCTGAACTGTGAGCAATGTGGTCGTGTCTTCCACAGGCCTGACGATTTGAAGAAACATATTTTGAAGCACACCGGCGAAAAGAAATACCAATGTCAAGTTTGTAAAAAATCTTTTGGGAGAAATCGAACGTTGACAGAACATATGCGTATACACTTAGACGATCGAAgatttgtgtgtatgttttgtGATAAGGCGTTTATCCAGAAATGTAGTCTAAAAGGGCACCTGAAGACGCATCACCCTATTGCTTAA
- Protein Sequence
- MNNIKYLMNHLVVEHERSIHSEVDIGVLPFVLMDGYKCPDCNSSFDNFLQLRNHLNEHYPRFVCGRCGKTFTNETNLKNHLEIHDKPAIVACSKCGEEFTSKSRQRTHEKNEHDLFPYKCPHCNMTFKLYTQRVQHMNQYHDMNITYPCDLCSVVCSSSSIRSRHMRRMHTNERRYMCSVCGYVSIDWIKTGVIVEKTQTDESNKNTTEVIKVEPTLTDGVKDEQIEINASRLKDLADKKITVKKKKRTKTADIKFDDSRYNAAIVLECSNACPFKLYDNSFGCAFCSFKSPDFLAIRDHSKAHQSKDFAKFLRDRKTDIECKADVTDLRCVLCQISMKDISTLFEHLIDAHEKPLLRKYNVGIVPYLLCEGYACADCGVSFDLFTSLNKHVVSHYPQCICSECGQAFFGSSSLKSHLKGHAKQARQYKCGVCNESFPTSHLKRKHMMSEHNMATYKCPYCTETFIRFSQRVTHLNKLHGKNINYPCKLCAKVFTNTTSRSIHMRYVHIKNNPLNCEQCGRVFHRPDDLKKHILKHTGEKKYQCQVCKKSFGRNRTLTEHMRIHLDDRRFVCMFCDKAFIQKCSLKGHLKTHHPIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -