Basic Information

Gene Symbol
stc
Assembly
GCA_964023945.1
Location
OZ030380.1:13279537-13283437[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 3 1.9e+04 -4.2 1.6 15 19 447 451 446 451 0.81
2 17 0.18 1.1e+03 -0.2 0.3 4 10 480 486 479 487 0.94
3 17 1.8e-06 0.012 15.7 10.4 4 18 497 511 495 512 0.94
4 17 2.6 1.6e+04 -3.9 1.8 1 10 530 542 530 542 0.67
5 17 2.2e-08 0.00014 21.9 15.1 1 18 548 565 548 566 0.97
6 17 0.32 2e+03 -1.0 2.0 7 14 570 577 570 577 0.83
7 17 1.6e-10 9.9e-07 28.7 14.8 1 19 604 622 604 622 0.98
8 17 0.66 4.1e+03 -2.0 1.4 5 10 651 656 651 656 0.96
9 17 0.00011 0.69 10.1 12.6 4 18 669 683 662 684 0.85
10 17 3 1.9e+04 -4.5 1.6 5 10 713 718 713 718 0.90
11 17 0.0056 35 4.6 11.5 1 11 724 734 724 746 0.88
12 17 2.5e-09 1.6e-05 24.9 12.1 1 18 751 768 751 769 0.97
13 17 2.8 1.7e+04 -4.0 1.0 6 10 798 802 797 802 0.77
14 17 3 1.9e+04 -7.1 10.5 7 19 813 826 808 826 0.63
15 17 0.61 3.8e+03 -1.9 2.8 9 18 844 856 842 857 0.71
16 17 7.4e-08 0.00047 20.2 11.1 1 16 862 877 862 887 0.88
17 17 1.3e-05 0.082 13.0 11.8 1 19 894 913 894 913 0.97

Sequence Information

Coding Sequence
ATGGCAACGTGGGACGGCTCCTATTCTGCTCCTgacgattattattataccgACCAAAATCTCGCTGGACCTTCCACGGGAAATTGGCAGGATTACTCTGGCAATGGGTGCGACACTCTTGTACAAAATGGGCGCGAATATTACCCGCAAAGTGAGCCCATGTACGATTATGGTGTGAATCCAAACCTGTCATCCGTCCCAGTGAACATGGTTCTACTCCAGAATCCTTACCACGAACAGCAATCACCGAATATGATGGTTCAAGACAGCATGGAATTCTACCCAACATCTGCCAGGTCTGCTCCAAATGCATACAGAAGTAATAGACCGAAGTATAACAAGAACAATCGTAGCCATACATTCTTCCAAGAGCAAAGCGAGTCACAAGTCGCTGATGATACAGATCTGTCCGGCAACAATCAAGATCAAGGTTCAAGATATTCTGGATCGAAAAATCGATCGTCTGGCAAATTGCATGATCGTGGCAGACACGAACGATTTAATAGCAGAGGCAGTAATACTAACAAAAGTAAAACATCAATGTATGATCAGTCACAAAAGGATTCGACGCAGAAAAAGTTTTACAGACAAGATAATAGAAACTATGGCAGATTTCAAGGGAAtcgattttataataataggCAACCTTCGACTTATCCTCAGCAGGATGGTTTTGACGCAAGTGGCAGTCAAATGGAAAGCACAACTGGAAGAACCTATCCTGATATGCAAGATAATGTATCTAACTATTACGAAGAGAGCGCAGATGCTACTGAAAATATAGGTGTACCAAGAGATAGTGAAAGCACGCAGAATTTAAGTAAAATGGAAAAGCAATTTAGAGATTCTACTCCTCAAAGTTCTAATAGTAGACAGTTCCAAAATCATTCGAGAAACAACAGAAAGTATGCTGGTAACTTAAGACAAGAAGGATATGAAACTAATTATAAAGACAGGAAACATAACTATCCAAGGTATAATGGGAATAGAGAGAATTATCACAGGGAATATAAATCTGATGCATTCTCGGAGAAAGATAAGAAGACTATAACAGAGAGCGAGGAGAAGCCTGGTGGATCTTGGAGAAACAAAAAAGAAAGTGAGGAAAAAATTAGTGCACCCAGAAAAAGACAAAGTAGGAAACAACTGGACGACGATGCTAGCCAAAGGGAAAGATTGAGTGATCAATTGAATAGAGGCATATTAGAATGTTTAGTCTGTTGTGAGAATATAAAACAACACGACTATGTTTGGTCATGTTCGAACTGTTATCATGTTTTACATTTGAAATGTGTTAAAAAATGGGCTAAATCATCGCAAGCAGATAATGGTTGGAGATGTCCAGCATGTCAAAATGTAACTGGATCAATTCCTGAAGAATACTATTGCTTTTGCGGGAAGGCAAAAATGCCAGAATGGAATCGTAGAGATGTTGCGCATTCCTGTGGAGAAACTTGCGGCCGTACCCTTTCcaaaaataattgtgttcatAAGTGTACACTTCTGTGTCATCCGGGTTCGTGTCCTGTATGCATAGCAATGGTAACAAAACACTGTGGCTGTGGAAAGACATCACAGACCTTACAGTGTAGTACACATACAACTCTGCTTTGCGAATCTATTTGTGAGAAAGAGTTGAACTGTGGCAGGCATAagtgtgagagaaaatgtCACGAGGGAGAATGTGGCCGTTGTGAAAAGACTGTGGAGCAAGTTTGCCATTGCGGTCAGAACAAACGAGAGATCACTTGCGACAAGGGTGTATCATTTACTTACGCATGTGATgatatttgcaacaaaaaCTTAGATTGTGGCAATCATACTTGCACTCAGTTATGTCACCCAGGTGACTGCAAGCCTTGTTCTTTGACTCCTGACAAGATCATGACCTGCTGCTGTGGTCAAACCACCTTAACAGAGGAACGCAAAAGTTGTTTAGATCCCATTCCAACTTGTGAAAAGATATGCGCAAAGAATTTAAGATGTGGTCAACCCAGCAATCCCCACAAATGCAAAGTAAACTGCCATCAAGGAGACTGTCCTGACTGTGATTTGTCAACAGATGTTAAATGTCGTTGTGGCAACATGGACAGGGAGATCTCATGCAAGGATTTACGATCAAAAGCCGATGACGCTCGCTGTGAAAAGCGATGTATTAAAAAGAGATCCTGTGGTAAGCATAAGTGTAATCAACTCTGTTGTATCGATATCGAGCACATATGTCCACTGCCATGTTCGAAGACATTAACGTGTGGCAGGCACAAATGCGAGCAGAGCTGCCATAGAGGCAGATGTCTACCATGTTACCGCAGTAGCTTTGAAGAATTATATTGCGAGTGCGGGCACGAAGTAATATATCCTCCAATTCCATGTGGAACAAGGAGACCTCCCTGTAACAGACCTTGTTCTAGACAGCATGGTTGTGGTCACGAAGTCATACATAATTGTCACAGTGAGCCGACATGTCCACCATGCACTGTTCTTACTCAAAGATGGTGTCATGGCAAGCACCAACTTCGCAAAGCTGTGCCGTGTCACTTAGGAGATATTTCTTGCGGCTTGCCCTGTGGAAAACCTATTTCTTGCGGGCGACATAAATGTATTAGTATATGTCATGCGGGCCCCTGTGAAAAACCAGGTCAGCAATGTACTCAACCATGTATAACTCCTAGGGAATTGTGTGGTCATATCTGTGCCGCTCCCTGCCACGACGGGATGTGCCCAGACACCCCTTGCAAGGAAATAGTTAAGGTAACATGCCAATGCGGACATAGAACAATGTCCCGACCGTGTGCAGAGAATTCGAAAGAATATCAAAGAATAGCAAGTAATATACTCGCAAGTAAAATGGCAGATATGCAATTGGGGCATACGGTCGATTTAGAGGAAGTGTTTGGTCAAGGAGCTAAGAAGCAGAATCAGTTAAAAACTTTAGAATGTAACGATGAATGCAAATTAATAGAGCGAAATCGACGATTAGCTCTGGGTCTTCAAATTATTAATCCTGATCTAAGTGGGAAACTAATGCCCAAGTATAGTGATTTTATGAAACAATGGGCCAAAAAAGATCCCCATTTCTGTCAATTGATTCACGATAAGTTGACCGAGCTAGTGAAGTTGGCGAAAACATCGAAACAGAAATCCCGAAGTTACTCGTTCGATAGCATGAATAGAGAGAAACGGCATTTCGTTCACGAATGCTGCGAACATTTTGGTTGCGAGAGTCAAGCATATGATCGTGAAccaaaaagaaatattgttgCAACTGCTGTCAAAGATAAGTGCTGGTTACCGAGCTATAGTTTGTTGGAAATAGTGAAAAGGGAAAATGGTCAGAGGAAAGTTCCAGGACCAATGTTAAATTGCAAATCGGTACAATCACTGCCGTCAAGAAAAAGCCAACCTGCGTCTACAAGTTCCAAAGTATACGAAGCAGACGAGATAGATTATTTTGATTTTGGGGGCTAA
Protein Sequence
MATWDGSYSAPDDYYYTDQNLAGPSTGNWQDYSGNGCDTLVQNGREYYPQSEPMYDYGVNPNLSSVPVNMVLLQNPYHEQQSPNMMVQDSMEFYPTSARSAPNAYRSNRPKYNKNNRSHTFFQEQSESQVADDTDLSGNNQDQGSRYSGSKNRSSGKLHDRGRHERFNSRGSNTNKSKTSMYDQSQKDSTQKKFYRQDNRNYGRFQGNRFYNNRQPSTYPQQDGFDASGSQMESTTGRTYPDMQDNVSNYYEESADATENIGVPRDSESTQNLSKMEKQFRDSTPQSSNSRQFQNHSRNNRKYAGNLRQEGYETNYKDRKHNYPRYNGNRENYHREYKSDAFSEKDKKTITESEEKPGGSWRNKKESEEKISAPRKRQSRKQLDDDASQRERLSDQLNRGILECLVCCENIKQHDYVWSCSNCYHVLHLKCVKKWAKSSQADNGWRCPACQNVTGSIPEEYYCFCGKAKMPEWNRRDVAHSCGETCGRTLSKNNCVHKCTLLCHPGSCPVCIAMVTKHCGCGKTSQTLQCSTHTTLLCESICEKELNCGRHKCERKCHEGECGRCEKTVEQVCHCGQNKREITCDKGVSFTYACDDICNKNLDCGNHTCTQLCHPGDCKPCSLTPDKIMTCCCGQTTLTEERKSCLDPIPTCEKICAKNLRCGQPSNPHKCKVNCHQGDCPDCDLSTDVKCRCGNMDREISCKDLRSKADDARCEKRCIKKRSCGKHKCNQLCCIDIEHICPLPCSKTLTCGRHKCEQSCHRGRCLPCYRSSFEELYCECGHEVIYPPIPCGTRRPPCNRPCSRQHGCGHEVIHNCHSEPTCPPCTVLTQRWCHGKHQLRKAVPCHLGDISCGLPCGKPISCGRHKCISICHAGPCEKPGQQCTQPCITPRELCGHICAAPCHDGMCPDTPCKEIVKVTCQCGHRTMSRPCAENSKEYQRIASNILASKMADMQLGHTVDLEEVFGQGAKKQNQLKTLECNDECKLIERNRRLALGLQIINPDLSGKLMPKYSDFMKQWAKKDPHFCQLIHDKLTELVKLAKTSKQKSRSYSFDSMNREKRHFVHECCEHFGCESQAYDREPKRNIVATAVKDKCWLPSYSLLEIVKRENGQRKVPGPMLNCKSVQSLPSRKSQPASTSSKVYEADEIDYFDFGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00391688;
90% Identity
-
80% Identity
-