Ecav014320.1
Basic Information
- Insect
- Ectemnius cavifrons
- Gene Symbol
- -
- Assembly
- GCA_964023945.1
- Location
- OZ030386.1:7145041-7147678[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.018 1.6 9.4 0.7 1 23 345 368 345 368 0.92 2 14 0.00061 0.054 14.0 1.1 1 21 374 394 374 398 0.91 3 14 0.32 29 5.5 6.2 1 23 482 504 482 504 0.93 4 14 0.0025 0.22 12.1 0.4 1 23 511 534 511 534 0.93 5 14 0.0006 0.054 14.1 3.9 1 23 540 562 540 562 0.97 6 14 2.4e-05 0.0022 18.5 2.3 1 23 568 590 568 590 0.99 7 14 3e-06 0.00026 21.3 2.3 1 23 596 618 596 618 0.98 8 14 0.013 1.2 9.8 0.4 1 23 631 654 631 654 0.94 9 14 1.9e-05 0.0017 18.8 3.3 1 23 670 693 670 693 0.96 10 14 0.00019 0.017 15.6 0.8 1 23 701 724 701 724 0.98 11 14 0.00052 0.046 14.3 1.2 1 23 730 752 730 752 0.97 12 14 0.004 0.36 11.5 5.2 1 23 758 780 758 780 0.98 13 14 0.0012 0.11 13.1 5.8 1 23 786 809 786 809 0.98 14 14 0.0021 0.19 12.3 0.3 2 23 815 836 814 836 0.97
Sequence Information
- Coding Sequence
- ATGGATATAACTCGCGATGCCAGGTCATGTCGCTTATGTGGTGTACAGATCGTCGAAGGAAGGTGCGTTCACATTTTCGACGACTCGACGAATTTAGTAGAAAAGATAAAGGAAACTTTACCCATCACTGTTTCTCGTGACGACGGTGACTCGTCATATATATGTGTGCCGTGCCATGATCAAGTAATACTGCATTACAAGTTTATTCAAGATATTCTTAGGCACACAGGCTCATATAATAAGCCACAAATAAAGCTCCCAGCTGATATCCCAAATTTATGCGATGTTTCAAAAGTGCAGACAGACGCAACCTATGTGTGTCCAAATTGCAATATGGATCTAATGTTTTTCATAGTTAACGAATCAGATGGTTGCGACTATCCACTAAAAATGTGTCTGGCTATGGTCGATCGGTCTGACAAACAGGACCGAGCAAAGGAAGAAAATGATGAAGGTGGTAATATCCTTTGTCCAAAGGATACAAATGTCCATGAGATTTCTAGGGTTATCAAAAGAGAATCATTCTTATATAAAGCAGAAAGGAATAGCGATGAATCTCAAGATGATAATGATCCCGAATTACCTGTGCCATTAGTCAATGATAATGTGATATATATTGAGACTCCACCTAACAGTGAAAACTCATCAGAGCAAATACAGCAATCCAATAAGGGAAAAATGACTGATGGTAACTCTGATGAACCAGAGTGTGAATCAAAACAAGATACAAAGATACAAAGCATGCCTGCTGTACCTGATCCAAATCTTATTAACTGTACGGATACGTTAAATGACAAGGAATCTGTAAATGATTTGTTGGGTGAGACAAATGCGGAGGATGTAGATGAAATTCAGGAGGATGTCTTGATGCAGGAAGATGAAGATGTGTTTCAGGAAACATATGAGACTAACTTTGATGATATCATCAAACCAGGACCAAGAATTATATGTGAGCTGTGTGGTGCCAGATACCTCTCACaattgaaattcgaatttcacaTGGAAAGGCACACGCTTAACAAAATGGACAAGTTCGAATGCACAGTGTGTGATAAAGAGGCAAGCACAGAAAACTTACTCTGGGATCATTATTATCATACTCACAAAAGCCTGATGCGGTATGCTTGTGAACAGTGCGGCAAGTTGTTCACAAAGAAATCTAGACTAACTGGACATCAGAAAGGAAATAAACATACAGGCATTAAGCAAATCCACCTTGATACAGCTGCAAGTGACCTAAATGTTAATCCTGAAGACGTTCAAAGAGCTATTACTGTACAAATTCAAGGGAAGTCCTCAGTAAACTGTAAGCTTTGTGGAAAACTCATCACTGACCTGGATCCGGATGCGATCAATGATTTAGTAACATGTGCTACATGTGAAGATTCTACTCTATCCTTGGTAGTAGATGGAAATGAGACTAAAGTGATTTCACCCAGACAATACCATTGCTCAAAGTGCTCTAAACACTTCGTAAGAAAGGAGAGACTGGAGTTTCACGAAATGAGGCATAACGAAAATATGAATGAATTTATTTGCAGCACTTGTGGCAAAGAATTTAGTGCTGAGAACTCATTGTATGAACACTACATGTTTGTACATAAAGGCGCGAGGCCCCACATTTGCGAATTATGTGGCAAATCATTCCAATTGAAAGCTAGATTGAAAGAGCACCATCGAACGCATACAGGCGAAAAACCGTACCAGTGCGACATTTGCGGGCAACGATGTAGAACGACGTATGCGTTAAAAATACAtcgaaaaattcatttttctgATAATAGGTACACTTGTAACATCTGTAACAAGACATTCAGCAAGAAACAAAACATGAATGAACATCTGGAGAAACATTGGAAGCATGATAAAAACGTAGCACTACCACAACTTTTCACATGTCCCATATGCCTGGAAGATCTTCCTACATATCGTATGTTGAAGCACCATATGATTGGAACTCATAAGATTAATAGCGATGATCCAATACTAGCAAAACAAAAGCCATGGTACGAATGCCCTGACTGCCATGAGAAATTCAAGCATCAGATGTCTTTGAAGGCACACAAGGAAAGAGTACATGAGGGAAGAATCAATCCCATTTACCAGTGTGATACTTGTAACGCTAGTTTTCGAATAAAACAGCTTTTAGTCAATCACATCAAAAGTAAGCATGATGGCGAGAAGAGATACAAATGCGCTCAGTGTAAGAAGGGATTCAATGACACAAAGTCTCTGTACAACCACGTCTTGTTGCACACTGGCAAGAAACCGTATGTTTGCGAATTCTGCAGTATGAGCTTCAGGAGGAAAGATTCGAGAGACCATCATCGAAGAAAACACACGGGTGAACAACCCTACCAATGTCGCGATTGTAATGAATGTTTCTCGACTTACAATAATCGATCAAAACATAGAAAGCGAGTGCATGGCGATGGCGATATCGAATGCCCCGAATGTGGCGAAAAGTGTAAtggacaacaagaagttagaATTCATTTAAACAAGCATCTAGGGGAGAAGTTACATCAATTGGAGAGCATGGACGATTCATAG
- Protein Sequence
- MDITRDARSCRLCGVQIVEGRCVHIFDDSTNLVEKIKETLPITVSRDDGDSSYICVPCHDQVILHYKFIQDILRHTGSYNKPQIKLPADIPNLCDVSKVQTDATYVCPNCNMDLMFFIVNESDGCDYPLKMCLAMVDRSDKQDRAKEENDEGGNILCPKDTNVHEISRVIKRESFLYKAERNSDESQDDNDPELPVPLVNDNVIYIETPPNSENSSEQIQQSNKGKMTDGNSDEPECESKQDTKIQSMPAVPDPNLINCTDTLNDKESVNDLLGETNAEDVDEIQEDVLMQEDEDVFQETYETNFDDIIKPGPRIICELCGARYLSQLKFEFHMERHTLNKMDKFECTVCDKEASTENLLWDHYYHTHKSLMRYACEQCGKLFTKKSRLTGHQKGNKHTGIKQIHLDTAASDLNVNPEDVQRAITVQIQGKSSVNCKLCGKLITDLDPDAINDLVTCATCEDSTLSLVVDGNETKVISPRQYHCSKCSKHFVRKERLEFHEMRHNENMNEFICSTCGKEFSAENSLYEHYMFVHKGARPHICELCGKSFQLKARLKEHHRTHTGEKPYQCDICGQRCRTTYALKIHRKIHFSDNRYTCNICNKTFSKKQNMNEHLEKHWKHDKNVALPQLFTCPICLEDLPTYRMLKHHMIGTHKINSDDPILAKQKPWYECPDCHEKFKHQMSLKAHKERVHEGRINPIYQCDTCNASFRIKQLLVNHIKSKHDGEKRYKCAQCKKGFNDTKSLYNHVLLHTGKKPYVCEFCSMSFRRKDSRDHHRRKHTGEQPYQCRDCNECFSTYNNRSKHRKRVHGDGDIECPECGEKCNGQQEVRIHLNKHLGEKLHQLESMDDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00391523;
- 90% Identity
- -
- 80% Identity
- -