Ecav015420.1
Basic Information
- Insect
- Ectemnius cavifrons
- Gene Symbol
- SCAND3
- Assembly
- GCA_964023945.1
- Location
- OZ030387.1:6109404-6111925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.3e-06 0.00083 19.8 4.4 2 23 327 348 326 348 0.97 2 15 0.022 1.9 9.2 3.7 1 23 354 377 354 377 0.97 3 15 3.3e-06 0.0003 21.2 1.8 2 23 444 465 443 465 0.97 4 15 9.6e-06 0.00086 19.7 1.8 1 23 471 493 471 493 0.97 5 15 0.00015 0.014 15.9 0.3 1 23 499 521 499 521 0.98 6 15 3.1e-06 0.00028 21.2 1.3 1 23 536 558 536 558 0.98 7 15 3.3e-06 0.00029 21.2 1.2 3 23 566 586 564 586 0.98 8 15 1e-05 0.00091 19.6 1.9 1 23 592 614 592 614 0.98 9 15 0.00071 0.063 13.8 0.2 1 23 620 642 620 642 0.99 10 15 3.1e-06 0.00028 21.2 0.3 1 23 648 671 648 671 0.94 11 15 1.6e-05 0.0014 19.0 1.3 1 23 677 699 677 699 0.98 12 15 0.00011 0.01 16.3 4.8 1 23 705 727 705 727 0.98 13 15 5.2e-06 0.00047 20.5 0.2 1 23 733 756 733 756 0.96 14 15 5.9e-05 0.0053 17.2 0.6 1 23 762 784 762 784 0.95 15 15 6.1e-07 5.5e-05 23.5 4.4 1 23 790 812 790 812 0.99
Sequence Information
- Coding Sequence
- ATGAACTCAGGAATGCAGCTCGACGCACAAAGACACTTGGAGCGAAACGCTCAGATTTCAACTGATAATCAAATGCTTGCCAGTGTTGGCAATCGCAAATGTACTTCCAAACAGGCCGATTTCAATCTCACAGCATCCATCGATAAAATGAACGATGCTGATGAATTATACTCGTTTCGTAGTTCTACCAAGGAGAAGTTACATCACAGGGGACAAGTTGACATTGTCGATATGTCAGCCGAAGATATCCCTCGATACAAATTCTTCTTTGTATACGAAGATCTCTTGTCCAAGTTCGTTGTGCTTAAAGCACTGGCGAATGATACGCCGAAAGAAATAGCGTTAAAGTTGATAGATGTTTTTGCTATCATCGGAGCGCCACAAGTCTTACAAAGTAATAACGGAAGACGTTTCACCGAAGCGCTCGTTAAAGAATTGCGATCGCTTTGGGAAGATCTTTTGGTTCTCGATGGAGAAACGAGTGGGAAGAGTAACGTTAACGATTTTAAAAATCTGTTAAGTAGATGGTCGAAGAAGAATCCTGGTAAAGCTTGGTACGAAGGTTTAAAGTTCGTACAAGTCTTGTATAATACTACGTTCCCTGGCATAGGCGATTTGAAACCTTGCGACGCGCAATTCGGTAGAAACGTGCAAGAAAGATTTCGACGGTTGACTCTTCGGACTGATTTAAAGAGGAGTATGTGTATGGAAGTCGCGAATTTGGAGAACGACGAGGAAAGTATTAAGAGAAATGGACACTCGAATTTGGAAAGAAACGCTACGAAGAAAAATAGTATCGAGCCACGAGAATATGATAATTCCAATGAACGACGAGAGCGTCAATTAAATCCTCATAGTTTCGATTTCGTAAACGTAAAAGACGAAGTATCACCTAACATGCAAACGGAAGATACCACGTTAGTCGAGGAATCCGCAATCGTACCTGACGCACAATCCGAGGAAAGCGAGTCGaatttaaaatgtaaaatctGCAAGAAACAATACATAAAACAAGGCCATTTAAAGAATCATATGAAGACACAcgtgagagggaaaaaataCGAATGCAAGCTTTGCAGTAAAAAATTCCATATTCTCACCTTGTACGAGAAACATTTGCGACAATCGCATGGTCAAAGAAAACCATCAGTATTAAGTAGATCCCGGCGAAGTGAAATCTCTCTTACAAATACTTCTAACAAAAACATATTAGACGCAACAGGAACAACCGAAGATTCGATAATCGAAAACATAACAAACACTGATTCCTATAAACGAAAACTATCAACAGAAAACAGAGCAGGAAAACTTAATGGAGATTCGCCACTGGAATGTACATATTGCAAACAAAAGTTCAGCTTTCCAAGTGTCTTAAAAAGGCACATGCGTTCACATACAAACGAAAGGCCATACATTTGCGAAGTGTGTAACAAGAGTTTCAAACAATTGGGTCATTTAAGTCAGCATTCATTAACACACAAAGATTATCGTTCTTTCCAATGCGCGCTCTGTGGAATAAAATTCGAATCTTTAGAATCCTTAAAGACACACTCGCTCACTCACAAGGGTGAATCAATACCGAAAGAAAAGGAGATGTTCCGTTTATTCGAATGCGACAGTTGCAAGAAAGTATTCACTACGAAAAGTGTATTGGAACGTCATATATTTACGCATACTCACGAGCGACAATTCGGCTGCAAAATATGCGGCAAGCGTTTTAAACAAGCGGGACATGTAAAATCGCATATGCTGGTGCACACTGGCGAGCGTAAATTCGAATGTACAGTCTGCTCGAAAAGGTTTAGTTTATCGAACTCTTTGAAGAAGCATATGTACGTGCACAACGGTGAGAAACCATATCAGTGCGATGTATGCGGTGCTCGTTTCTTAGAGAAAAGAAACTTAAACGGTCATTTAATGACTCATACGAACGAGAGACCATTTCGATGTAAGATTTGCGGGAAGCGTTATACCCTTGCGGATACTCTTCGTCGTCATATCAGTGCCGCGCACGAGGATGGCCGAACTTATCAATGCGAGATTTGTGCGAAGATGTTTAAACAACTAGCACACTTATCCGTGCACAAGAAGGTGCATAACGACGAGCGACCTTTCCAATGTCATCTCTGCGAGAAGACTTTCAAACATAAGAATGTATTAAAGAGTCATTTAGCTATTCACGCGAATGTAAGACCTTTCGAGTGCGACGTATGCAAAGCAACTTTCGTACGAAAGACTAACTTGCAAACTCACATCGCTTCCGCTCATATGAACGAAAGGCCATACGCTTGTACGATATGCGAGAAACGTTTCAAACAAATCAGCCATTTGAACGGCCACGTAGTTGTTCATAGTAATTCCATGCCTTATCAATGCGACTACTGTGACCGGCGTTGTAACCGGTTGGATAacttaaagaaacatatgCGTCTTCATACTAAGAataaagagtga
- Protein Sequence
- MNSGMQLDAQRHLERNAQISTDNQMLASVGNRKCTSKQADFNLTASIDKMNDADELYSFRSSTKEKLHHRGQVDIVDMSAEDIPRYKFFFVYEDLLSKFVVLKALANDTPKEIALKLIDVFAIIGAPQVLQSNNGRRFTEALVKELRSLWEDLLVLDGETSGKSNVNDFKNLLSRWSKKNPGKAWYEGLKFVQVLYNTTFPGIGDLKPCDAQFGRNVQERFRRLTLRTDLKRSMCMEVANLENDEESIKRNGHSNLERNATKKNSIEPREYDNSNERRERQLNPHSFDFVNVKDEVSPNMQTEDTTLVEESAIVPDAQSEESESNLKCKICKKQYIKQGHLKNHMKTHVRGKKYECKLCSKKFHILTLYEKHLRQSHGQRKPSVLSRSRRSEISLTNTSNKNILDATGTTEDSIIENITNTDSYKRKLSTENRAGKLNGDSPLECTYCKQKFSFPSVLKRHMRSHTNERPYICEVCNKSFKQLGHLSQHSLTHKDYRSFQCALCGIKFESLESLKTHSLTHKGESIPKEKEMFRLFECDSCKKVFTTKSVLERHIFTHTHERQFGCKICGKRFKQAGHVKSHMLVHTGERKFECTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKTFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYACTICEKRFKQISHLNGHVVVHSNSMPYQCDYCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00391477;
- 90% Identity
- -
- 80% Identity
- -