Basic Information

Gene Symbol
JARID2
Assembly
GCA_964023945.1
Location
OZ030377.1:3958357-3968656[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 4.4 9.3e+03 -2.8 0.1 53 83 149 178 139 179 0.62
2 3 3.8 8e+03 -2.6 0.0 38 65 1081 1107 1076 1118 0.81
3 3 9.1e-23 1.9e-19 69.9 0.0 6 89 1334 1415 1330 1415 0.94

Sequence Information

Coding Sequence
ATGGTTTTGAGTAGGAATGataaaaggaagagaaaagaagGGGATTTGGTGGATCTCATGGAGCCTCTTTCAGAAACTTCCAAAAGAACAAAAGTACATGCGCAAAGAAAGTTCGCGCAAGGAGCTTCGACGGTATTTAGTCCCAGTCACACACCAATAAAAGACAAGGAAAAGTCAAAACCGCCTGTGATTACAGAATTAATAACACATAAGCGTCCGAACACAGAAGATTTTTTAACGTACCTATGTTTCAGAGGTACATCTATACTGCCGCCGAGTTTGAACTTTTTCAATGTCGGAGCTAAAAAGGAGAAGATAGAATCTAAACAATCGAACGCCGCGGTACCAAGTAAATCGCAAACCACGAGTAGTCAGTCGGCTAGTAATCAGAAAGCCGAAAGCAATCAGAAGACTATTACCAAAGTTAAACCAATTATCGCGGAGAAGAAAGTTTCCAGTGTCATCCAGAAGAAGATAACAAAATTCAAGAGCACCACGTCTACTGTCCAAGCGCTGAAAAAGAAGTATCAGGAGCAACGGTTGGCTAAGCAAAGAATCAAAAATAAGTTCAAGAGTTCGAGTGTTATGAGAACAAGATCATGTACGGAAAGAGCGATTTTAAAAGTTGGGGGTCAATTAGCACCGAGGAAGTTTCTCCCTAGAATTGAAACTAAAAGATTAGGTTTAAGAAGCGGCGTGCTTAGAGACGCGGTGAAGAAAGCTTCCCCCAAATGTAAAGTTCTTCCAATGAAACCAAAGAAGAAAATTGTAAAACAACAAGAATGTACTGATTCTTCGGAGTCAGACTTATCCTCCTCgtcagaggaagaagaggaagagttACCTTCCGAAAAGTCTAATAATAACGTAAAGCGGACAGTGCAGCAGAAACAAGTGGCAAAGAATATGTGCACTAGAAGCAAGTCCGAATCGAGAAGAATCACAAGATCGCACAGCGGCACAGTCTCCAATGAGAATTCTTCTAAACGGCCAACCCGGAAGACTAAAGAAGCAGCTGCGGCATACATGGAAATTTTAGGTAGAAAACTGCTAAGTCCAGCCGCTGAAAATGATGACAATGCTTCGACAGAAAGCTTCTCGGAATCGCCGACTACTCGTCGAACTGGCAATGGTGAAAGCGAAGTGAAATCGAAGATGAAACAAACTGTGAAAACTGTTACCAAAACCAGAAGTTGTAAAGCTACATCGTTCGCTAATACGCCGAACAAGCGACTGGATAAGAATAAGAACAATAAAATGGTATTTAAAAGTAAGAGATTAGTAAAAGTTCAGAAGTATTGTGAAATTGAAAGCGACGAGGAGTCCGAAAGTTCAGTCGAGACTAATAACACACGACCTGTTACACGGCGAAGTGTGGGAAAGGTAAACAAACCTGTGGTTCGTCACCTTCGATCCGCGTCAAAAAACTTAATAACAAGGGTGGAAACTCAAAATACTATTAGCGCTAAAGGCAAAACCCAGATACAAACTAGCATCAAAACGACCAAAGAGAAGTTTTTATTGAAGCGTAAACGAGAAGTTAGTGATAAACCAGCACCCGGCAAGAGCTCGGAAACAAAGCAGAAGGAAGCCCAGAATAATGTAAATAAAGAATCCGAGTCAGACGAAGAAACACTGGGgatgttattaaataaattgaaacGGAAAAAGGACatcgaagaagaggaaaaagcAGACGTCACAGAAGTTGTGAATTCGAAAGAAAAACAGAAGCAGATTTCTAAAGAGCGAGCCGTGAAGTTGGAAATAACGAAGATATCAGATGACGAAGAATCTTTCCATGGTTTCACGAAGAAGACAATAACGAATATAATGACTACTTCTCAAACTTGCACTACCCCAAGCAACCTTGTAAAAGACGAAGCCAATATTAAGGCGGATAAAACGAAAACAGTCGACCTCGTAGAAAGTCCAAACATGAAGGAAACACCCGAGAAGAATGAAACTGCGGAATCTTCGCATACACTAGCTGACCTAGAAAAAACTAAATCCATCAAAAATTGTAAACCGATAAACGTACCTACAGAAATAAAACTAGACTCTCCACCAAGAATGAATGAGGAAAGAAAGCATGCTCAGAAAATAACTGTTTCCACTACTAACATTGTTGACGTTACCCTTTCAACGCTGCACatgagaaaagaaaaggtCAACATGTCCACCGAACAAATAGAAAAGTGGTTAAACGAGAGCACCTTCGCCAAAGAAGAAAGCAAATTGGAAATGGAAAACATGTCAAATTTTAAATACGACATTTGTGAGAAGAAAACGGATACTTCACACTTATCCATCTCTACGAAGATTCAGCATTTAGTTAGACCAGTGAATGTTACCTTATCGAAATTGTCTGAAAAATTGAACATGAAAGATCGCACCAGTTTCCAGAATAAGTCGATAGGATTTAATCTCAATGATAGCAATCCGTTGTTCAATAGAAAACAAGAATGCACACCTATCAAGCAAAATAAAATTGCTTTGGATATAAAAGACTCTATGAAAGGTAAACATATAAAACCAATCAAAGATTCTTCACCTGGCGAAGATGATACTTTATCGAAATCGGATCAAAATTCGTTAGACGGATCCGTTGAGAAGAAACTAACAACAGAGAAAAAGCCAATCTTTCAACCAAGGAAACCATTTCTGCCTAAAGTCAAGGAACGTAAGACCGTTGTTCCCAACGTAAATGCATTTTCTCCCGAAAACGAGAGTAGTGTCTATGCGTTTGAAAGCGACACTGAAGTACCAGTCAGTACTCCATTCAGGCGGAAGGCACGCGAACAAAACAAAATTGCAGCCTTGAATTCAGCAAGTGAGGGTGAACTAACTATAGTAGAGGAACAAATATCCAAGCCGAATTCCGAAACATCAGAAGTGAAGGAAAAAGTGCCTAGAATTATTGTAGAGAAAATTGAAAGCGACTCGCAAGAGAGCAGAAGCACGTCGGTCGATAGAAGTAAATTTGAATTACCAAAAAGCTTTGGAACACTTGCAAATATACAAGTTTTGCCTCTCGACAAATTAACAACATCGTGGAGCAACGTCAATTGCAGCGCTTCTATAGCTGTTCAAGTGAATTTAGACGACAGCAATCAAGAACAATTACAAGGAGATGAGACTGCTACGAACCAGCATAGGAGTACCGAAATATCCACCCAGACAGAGAATAGCAATGAAAACGATGATGAGAATGACGgccaattattttatatacctTTACAAGCAGTAACCAGAGGTGGGCCGAACTTAGTTCAAGGACACCAATTGATTCAAGGTGTAGCGGTAAAGCTTGGTACAGATGGACCAAATGGACCCAATCAAAAAGTTCTTCTCAGAGCGAAATTAGTCACAAAACCTCCATCATCAATCGCTCGATGTCCTCCTGTGGGAACGGTTCAGCCAACAACTCGTACACCTCCCACTAACAACGTACTTACAGGAATTACTGAGCAATCGGTACCGTCAACATCAGCGATTGTTACACCTAGCACTGCTGTTGCTAGTACAGAACCGATTCTCGGTCCACCGTTAAGTACTGAACATACCACAGCACAGCCAAGTGTTTCAACAACCGCGGTATTGGTGGAGAAATTAACGAAATCACCAAAGGGTTCCAGGGAAAGAAAAATGTCTGTGGATTCAACGAAAAATACCAAACGATGCCCACCAAAATCGAAGCTGAAGAATACGGAAATCTGCTCTCCGACGAATAACGTTGCATTCCCAAGTGCGAAGAGTTCGAGCGACGGTGCCCGTTTAGTAGAAGCGCCAACGTTTCATCCGACAGAAAAAGATTTCCAAGACCCACTGGACTACATTGATAAAATAAGACCTGTCGCGGAAAAGTTCGGAATATGCCGAGTTGTGCCTCCATCCAACTTTAAACCGGAATGCAAAGTATCCGACGACATGCGATTCACAGCTTATAATCAATATGTACACCGTATGCTACACAGATGGGGGCCTAATGTGAAGGAGATGATGGCTATCAAGAAATATCTGGCTACTCAAAGTATAACTTTATCTCATCCGCCATGGATAGGCGGTATGGAAGTAGACTTACCGCACTTGTATCAAACGGTACAAAGTTTGGGCGGCTTGAAGGAAGTAATTGAGAAGAAGAAGTGGCAGAAGGTGGCGGACGGTATGAAAATACCGAAATCTGCTCAAGATCGTGTCACCAAATTAGACGACATTTATTGTAAATACTTATTGCCTTATGACACCTTGTCGCCTGAGGAGCGCGATAAACTGTTTAACGAAGTTGAAGCCGAATGGACGAAGAGAGAGACGAGAGTTTTGCAGAGGCACAATGGTCTGTTGAATGACACTGAGGAGGATGACGAAGACGACAGTTCTGATGAAATTGATGAGTGCATTGTAAAGGGACGAAATATGCCGCTAAATGCATTTTATCGTATTGCGCGAAATACGCAACGAATGTGGTTCGGTGAGAATCAGCGTTCAGGAAACGAAACCGACGGCGCGTCTGCTGCCGACGTGGAGAACGCATTCTGGAAACATGTCGCCGAGAGAAAGCGGCATGTGTGCGTGCATGCAGCCAGTATCGACTCGAGTGGCCGTGGATTTGGCTTTTCTGTAGCAAAAAATAGTCCCTTCGCCAGGCATCCATGGAACCTTAAAGTTCTCACGAACAATGCGGGCTCAGTTTTACGTGCACTTGGTCCAATTATggGTGTCACTGTGCCGACACTTCACGTTGGTATGTTATTTAGCGCTTGCTGTTGGTACCGAGATCCGCATGGTCTTCCTTGGATAGAATACTTGCACACAGGCGCGAAGAAGATATGGTACGGCATACCCGACGAGCACAATAATAACTTTAAGACTGCTCTTTCGAAGATGGTACCGCGTTATTGCAAGAACAAAATCGTATGGTTGCCGTCGGACACAGCGATGGTACCACCGGATTTGTTAGTTAGCAATGGTGTCTCTTTGTGCCAAACTGTCCAAGAACCAGGCCAGTTTATAATTGTGTTTCCGAAAGCATTTACATCGAGCATATGTACTGGATATGTAGTATCCGAAAGCGTTTATTTCGCTCAGCCGTCGTGGCTGGAAACTGCCGAACAAGTATTTAAGGATATACAAGATAGTTGCGAACCATCGATCTTTTCGTTCGAGAGACTGTTATTCAACATAATAAATGATTCCAGATCACACATAGACGTGCTGAAACAGATTCTACCTAGTGTAACGAAAATACGGGAGAAAGAGATCTCTTATCGCAAAGAACTGGAAGCGATCGGCTTGACGAATACAGAAAGACTACCACTGCCAGATAGTGGGAAGCGTAAGAAGGGGAAAAAAGTTAAAGAAGATGACGGGGACTTCGAGTGTGAGACGTGCAGAGCGAATTTGTTTGTCTCTTTGGTTAATAATTCGCAAGATGACAGTGTTTACTGCTTGACGCACGGACTGCAGCTATTggcgaagaagaagcagaTTTTGAAGCATTGTACTTTAATGTACACATACGACGAGGACGAATTGGATGAGTTGATACACAGACTGGAAGATAGAATTGAAGCCAAATCTAAAAAGACTAATCAAATCAAGCAAGCGAAGTGA
Protein Sequence
MVLSRNDKRKRKEGDLVDLMEPLSETSKRTKVHAQRKFAQGASTVFSPSHTPIKDKEKSKPPVITELITHKRPNTEDFLTYLCFRGTSILPPSLNFFNVGAKKEKIESKQSNAAVPSKSQTTSSQSASNQKAESNQKTITKVKPIIAEKKVSSVIQKKITKFKSTTSTVQALKKKYQEQRLAKQRIKNKFKSSSVMRTRSCTERAILKVGGQLAPRKFLPRIETKRLGLRSGVLRDAVKKASPKCKVLPMKPKKKIVKQQECTDSSESDLSSSSEEEEEELPSEKSNNNVKRTVQQKQVAKNMCTRSKSESRRITRSHSGTVSNENSSKRPTRKTKEAAAAYMEILGRKLLSPAAENDDNASTESFSESPTTRRTGNGESEVKSKMKQTVKTVTKTRSCKATSFANTPNKRLDKNKNNKMVFKSKRLVKVQKYCEIESDEESESSVETNNTRPVTRRSVGKVNKPVVRHLRSASKNLITRVETQNTISAKGKTQIQTSIKTTKEKFLLKRKREVSDKPAPGKSSETKQKEAQNNVNKESESDEETLGMLLNKLKRKKDIEEEEKADVTEVVNSKEKQKQISKERAVKLEITKISDDEESFHGFTKKTITNIMTTSQTCTTPSNLVKDEANIKADKTKTVDLVESPNMKETPEKNETAESSHTLADLEKTKSIKNCKPINVPTEIKLDSPPRMNEERKHAQKITVSTTNIVDVTLSTLHMRKEKVNMSTEQIEKWLNESTFAKEESKLEMENMSNFKYDICEKKTDTSHLSISTKIQHLVRPVNVTLSKLSEKLNMKDRTSFQNKSIGFNLNDSNPLFNRKQECTPIKQNKIALDIKDSMKGKHIKPIKDSSPGEDDTLSKSDQNSLDGSVEKKLTTEKKPIFQPRKPFLPKVKERKTVVPNVNAFSPENESSVYAFESDTEVPVSTPFRRKAREQNKIAALNSASEGELTIVEEQISKPNSETSEVKEKVPRIIVEKIESDSQESRSTSVDRSKFELPKSFGTLANIQVLPLDKLTTSWSNVNCSASIAVQVNLDDSNQEQLQGDETATNQHRSTEISTQTENSNENDDENDGQLFYIPLQAVTRGGPNLVQGHQLIQGVAVKLGTDGPNGPNQKVLLRAKLVTKPPSSIARCPPVGTVQPTTRTPPTNNVLTGITEQSVPSTSAIVTPSTAVASTEPILGPPLSTEHTTAQPSVSTTAVLVEKLTKSPKGSRERKMSVDSTKNTKRCPPKSKLKNTEICSPTNNVAFPSAKSSSDGARLVEAPTFHPTEKDFQDPLDYIDKIRPVAEKFGICRVVPPSNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLSHPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEERDKLFNEVEAEWTKRETRVLQRHNGLLNDTEEDDEDDSSDEIDECIVKGRNMPLNAFYRIARNTQRMWFGENQRSGNETDGASAADVENAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPIMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFKTALSKMVPRYCKNKIVWLPSDTAMVPPDLLVSNGVSLCQTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFKDIQDSCEPSIFSFERLLFNIINDSRSHIDVLKQILPSVTKIREKEISYRKELEAIGLTNTERLPLPDSGKRKKGKKVKEDDGDFECETCRANLFVSLVNNSQDDSVYCLTHGLQLLAKKKQILKHCTLMYTYDEDELDELIHRLEDRIEAKSKKTNQIKQAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-