Basic Information

Gene Symbol
nfxl1
Assembly
GCA_932527285.1
Location
CAKOBM010000243.1:536626-539100[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 2.2e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 19 0.014 1.6e+02 2.7 0.7 4 10 169 175 168 175 0.97
3 19 3.1e-07 0.0034 17.6 15.9 3 19 186 202 185 202 0.95
4 19 0.67 7.2e+03 -2.6 1.5 1 4 227 230 227 234 0.85
5 19 5.9e-08 0.00064 19.9 13.6 3 19 239 255 237 255 0.91
6 19 2 2.2e+04 -4.7 1.2 6 10 280 284 280 284 0.86
7 19 6.6e-10 7.1e-06 26.2 12.0 1 19 290 308 290 308 0.99
8 19 1.6e-06 0.017 15.4 18.8 3 19 345 361 337 361 0.86
9 19 6e-06 0.064 13.5 18.3 1 18 395 412 395 413 0.97
10 19 2.3e-08 0.00025 21.2 16.9 1 19 422 440 422 440 0.99
11 19 0.0075 81 3.6 8.0 9 19 488 498 479 498 0.84
12 19 0.0011 12 6.3 7.7 1 11 508 517 508 518 0.96
13 19 0.31 3.3e+03 -1.5 3.3 14 19 547 552 547 552 0.85
14 19 0.3 3.2e+03 -1.5 0.2 8 12 568 572 567 572 0.77
15 19 0.00023 2.5 8.5 5.7 1 11 588 598 582 599 0.92
16 19 1.9 2.1e+04 -4.0 4.0 15 18 613 616 611 618 0.50
17 19 0.00095 10 6.5 14.9 3 18 629 645 628 646 0.82
18 19 2 2.2e+04 -6.5 3.4 9 13 652 656 652 656 0.71
19 19 6.6e-06 0.071 13.4 11.0 1 16 687 701 687 706 0.90

Sequence Information

Coding Sequence
ATGGCGCGTCGCTACAGAGACGCTGCGGCGAAGCTGCAACAAAATGTGCAGAAACACCTCAAGGATATGAAAGATCTATCTTCCTCCGAGGATGAGGAGCCGTACGAGTCCAGTGTCATCGAAGGGATGTTTCAGAGCTATTGGCGCGGCGGGGGGGACACCCAGATGCTGAATAGAACCAAGAATCTTCTGGAAGAGGCAATCAGCGGCCGCTCGGTTGCTTGTCTGATCTGCATCAGTTCCATCAAGCGGAACCACGCCGTGTGGACGTGTGACCACTGCTACTCGTACTTCCATCTCTCCTGCATTCAGAAATGGGGCAACGACAGCATTAGTTTGCGTAGCATTGAACCTCAGGCCCCTATCAGCGTGTACAAGCCGCCGAAAATCGAATGGTGCTGTCCCAAATGTCGCAACTCCTACAGCAAGGAACAAATACCGAGGAAGTACAGGTGCTTTTGCAGTAAAACTGATAATCCACCCGTTCACCCATGGCTGATACCTCACACTTGTGGAGAAGTGTGCGAAAAGAGACTTTCAGCTGGAGAGAGTTGTAAGCACAAGTGTCTTCTGCTGTGCCATCCCGGGCCATGCCCCCCCTGTCCACAAACAGTCAATGGAATCTGCTACTGTGAAAAGGAACGTAAGAAAGTCAGATGCAGTGCTGCCAAGTGGTCGTGTGGCCAGCACTGCAAGAAAACATTGCTCTGTCAAACTCATAAATGTGAACTGCTGTGCCATGAAGGAGAGTGCCCACCGTGCACTTACACCAGCGTGCAGCCCTGTCAGTGTGGAGCAGAAAAAACCAAGAGACCTTGTGATGACCCTTTCTGGCACTGTACGAAACCTTGCAGCAAACCATACTCTTGTGGCTATCACAAATGTGAGAAAGTATGTCATTCGGGCAGCTGCGATGAGTGCCCCAACTCTGGCATGAGGTCTTGTCCATGTGGAGCAAACCAACGCTACGTCCAATGCCCTGACACCATGGAAACCTGTGTCGGAACCTGCGGTAAAATGCATGATGACTGTGAACACAGTTGCCCGGAAAAATGCCACAAGGGGCCCTGCCCTCCCTGCCAGGTACTGATCCAGAAGAAATGTCAATGCTCAACTCACACTAGATCCCTACCGTGCAGTAAAGAGTTCAAATGTGACACTAAATGCAGAGGAACCAGACCCTGTGGAAAGCATGGTTGTGCCAGAAAATGCTGCAATGGGAATTGCCCTCCGTGTGAGAAAGCCTGTGATAAGCCTCTTCAATGTGGCCGCCACAAGTGCACCACAATCTGCCACCACGGACCGTGCTATCCGTGCCCCATGGAATCCAAAGTCACCTGCAAATGTAAGGAGACATACGTGACAGTTCCATGTGGAAGGGAGAGGTTCACCAAACCACCTAAATGTCACCTGCCTTGCAAGGTCAAGTACAAATGTGGTCACACTGAAGAAAACAAACATTCCTGTCATTTCGGAGACTGTCTGCCATGCAAAGCTACATGCTCCAAAACTTACCCAAAATGTGGTCACGAATGCAAGGCAGTCTGTCATCAGTTCAAAGCAGTTGTCTTCAAACAGGTTGAAAAGCCGGCGACACCCTGGGAAGTTCAGCCGCCGAAAACTAAAATCATGACTATGGAATGTCCTCCGTGCACCACTCCTGTGACTGTCATCTGTTTTGGAGAGCATGAGACGGACAGCCAGCCGTGTCACACGGCGGTGCGCCGGCCCTGCGGTAGGGCATGCGGGAGGCCTCTAGCTTGTGCCAACCACAACTGCACACAGCTCTGCCACTTGTACAGCCCAGATCCTGACTATCAGAATGTGCCACATAGCTGCAAGCCTTGTCACAGGGAGTGTCTGAAACCTCGGCCAGATAAATGCACACACAAGTGCCCTAAGAGCTCATGCCACCCCGGTGCTTGTCCATCCTGTGAGGTACTAGAACGCATTCCATGCCACTGCGGCATCACCGAGCTATACCTCCGCTGTAGGGAGTATTCTAAAGCAACAGATGAAATGCTATCCTGCAAACAGCAGTGCCCAAAGAATTTAGAATGTGGCCATCGCTGCAAAAACACGTGTCATCCGGGCATCTGTAGCAACCAGATCTGTACTAAGAAAACTAAGATACACTGCCCTTGCGGGAACATAAAGAAGGATGCTCCGTGCAATGCTGTTAAAAGTGGTGAAGCTACAGTTGCATGTGATAAGAGCTGCGAAGTAAAACAAGCTGCAGCAAAAATGGAGAGTGAGAAAGAGCAACAGAGATTGAAGCTGTTAGAAGAGGAAAAAAATAAAAAGGAGCTGGCTGAATACGAGTGGAAACTCAGCGGGAAAAAGAAGAAATACAAAGAGAAGAAGGTGGTGGTTAATAAAGATGACAGGAACTGGGTTCATCGACACTGGTTGCCGATTCTATCTGTATTAGTAACTTTCTTAGCGGTAGCTTATGTTGTACACAATAATATGTAG
Protein Sequence
MARRYRDAAAKLQQNVQKHLKDMKDLSSSEDEEPYESSVIEGMFQSYWRGGGDTQMLNRTKNLLEEAISGRSVACLICISSIKRNHAVWTCDHCYSYFHLSCIQKWGNDSISLRSIEPQAPISVYKPPKIEWCCPKCRNSYSKEQIPRKYRCFCSKTDNPPVHPWLIPHTCGEVCEKRLSAGESCKHKCLLLCHPGPCPPCPQTVNGICYCEKERKKVRCSAAKWSCGQHCKKTLLCQTHKCELLCHEGECPPCTYTSVQPCQCGAEKTKRPCDDPFWHCTKPCSKPYSCGYHKCEKVCHSGSCDECPNSGMRSCPCGANQRYVQCPDTMETCVGTCGKMHDDCEHSCPEKCHKGPCPPCQVLIQKKCQCSTHTRSLPCSKEFKCDTKCRGTRPCGKHGCARKCCNGNCPPCEKACDKPLQCGRHKCTTICHHGPCYPCPMESKVTCKCKETYVTVPCGRERFTKPPKCHLPCKVKYKCGHTEENKHSCHFGDCLPCKATCSKTYPKCGHECKAVCHQFKAVVFKQVEKPATPWEVQPPKTKIMTMECPPCTTPVTVICFGEHETDSQPCHTAVRRPCGRACGRPLACANHNCTQLCHLYSPDPDYQNVPHSCKPCHRECLKPRPDKCTHKCPKSSCHPGACPSCEVLERIPCHCGITELYLRCREYSKATDEMLSCKQQCPKNLECGHRCKNTCHPGICSNQICTKKTKIHCPCGNIKKDAPCNAVKSGEATVACDKSCEVKQAAAKMESEKEQQRLKLLEEEKNKKELAEYEWKLSGKKKKYKEKKVVVNKDDRNWVHRHWLPILSVLVTFLAVAYVVHNNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00857272;
90% Identity
iTF_00738024;
80% Identity
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