Esil007984.1
Basic Information
- Insect
- Ecliptopera silaceata
- Gene Symbol
- -
- Assembly
- GCA_932527285.1
- Location
- CAKOBM010000038.1:654203-655996[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.24 14 6.6 1.5 2 23 32 53 31 53 0.94 2 15 0.00057 0.034 14.9 1.3 2 23 123 145 122 145 0.96 3 15 0.00018 0.011 16.5 2.6 1 23 150 173 150 173 0.96 4 15 2.2 1.3e+02 3.6 4.0 2 23 178 200 177 200 0.93 5 15 0.27 16 6.5 2.7 2 23 203 225 202 225 0.95 6 15 0.97 57 4.7 1.1 2 19 232 249 231 252 0.90 7 15 0.0014 0.084 13.6 3.3 1 23 301 324 301 324 0.96 8 15 3.5 2.1e+02 3.0 0.1 2 23 353 375 352 375 0.92 9 15 4.7 2.8e+02 2.6 1.8 1 23 396 419 396 419 0.94 10 15 0.00044 0.026 15.2 0.3 1 23 424 447 424 447 0.94 11 15 9.5e-06 0.00056 20.5 1.0 1 23 452 475 452 475 0.95 12 15 0.0024 0.15 12.9 0.6 3 23 482 503 480 503 0.96 13 15 0.00055 0.033 14.9 2.2 1 23 507 530 507 530 0.97 14 15 0.0025 0.15 12.8 0.2 2 23 537 558 536 558 0.96 15 15 0.001 0.059 14.1 2.3 1 23 564 586 564 586 0.96
Sequence Information
- Coding Sequence
- ATGCAATTACCTAGCAGTGAATGCAGGCGAAGGAATCTCCAAACACTAATCAACAATACCTCGGTGATACCCTTTAAATGGCGTGGCAAATTCTTGTGCTTCTTCTGCGGAATAGATATACAAAAATATCACGATTTAAAAGAGCATATGAAAATACACGTTCCCTGCTCGAGTGCCGACCGAGCAATGAAACTCATAAGATGCGGAAACGAAACCAAAGTAGACGTCTCCGAAACTAAATGCACTGTTTGTTCAGATGAATTATCTGACATAGATAGTTTAATAACACACTTGAAATGTAAACACATGCTTTGGTATGATACCAACGTGTCGTTAACTCTTACAACATACAGACTGGCTGACTTGAAATGTCTCGTTTGCGACGAGAGTTTCAAATTGTTCCGTAAGCTCGTACGGCATATGAATAAATCCCATCCTCATAGTTTCTTCCAATGTGATATCTGCCGCCAAACATTCAATAAAAAACGATACTTATCAGATCACATCAGATTTAGTCACCTGAAAGATCTCAACTGTTCGAAATGCTCACTTTCCTTTTCATGCTTTCAGGATCTTATCAAACACAAATCTAAGATGCACTTCTCTAGATGCAATCTTTGCTTTCGAATGTTTTCATCATATCAGAAAAGTCTCAACCATATGAAAAAGGAACATCAGTTAAACGACGGAGTAGAGTGTGGATTTTGTAAAAAACAATTTCACACTAAATTAACTTTTTTGGTTCATGCCACTAAATGCCAATTTTCTCTAAAAGACGATAAAACAGTGGTGGTCGTTGATGATGAAAATAAGCATGAAAAAGTAAGAGATCTCAGAACCAGCATTGCGTACATCATCAATATGACCGCTGCTATGCCTTTTAAGTTCTTACGAAGCAAGTTCAGATGCTTCTACTGTTCAAAAGACTTTACAGTTTGCGGCGATCTCAGACAACATACGTTAAGTGAACATCCCGTATGCGAGACAACTTTGCCCGCGATGAAGCTGCGAGGAAGATCTGAGGGAATCAAAATAAAAGTCGATACATCTTCTTTAAACTGCCAAATGTGCTCTGAAAGATTAACCGATTTCACCGCAGCAATCAACCACTTAGAAGTTGAACACAAAGTCGTCCTTACGAAATGTATCGACATGTTCCGACCTTTTAAATTAGTACACGACAAGTTTTGCTGTGGGGTTTGTAGCTCAGAATTTAGATATTTCAGTATACTACTACAGCATGTGAATTCTAGTCACTCTGATAATAATTTTATTTGCACATTTTGCGGAAAGGCTTTCGTTTCGTTGATAACTCTCCGCGGTCACATCTCTTACCGACATTCTAATGATAAGCACAAATGTAAAGATTGCAATCGAAGCTTCCCAACGGATGATAGTTTGACGATACACATGGGCAGAGCACACGGCAGAAAGTTAATTAACTGTCCGCAATGCGTAGAAAAGTTTATCTCCCCTTATCATAAAATGAGGCATATAATGAAAGTTCATGGTGGGGGTCATAAATGCTCCTTCTGTGGTATGGCTTTCGCTAAGTACTCGTATATGATCAACCATGTCAGAAGATCGCATTATAAAGAGAAAACGGTTCCGTGTACTATTTGTAAAGAGCTGTTTTTTGACAAGCCAAGCTTGAAGATGCACATGGTGAAACATGTTGGCGAGCGCTCGTTCTGCTGTGACTACTGTGGAAAGGGTTTTCTTAGAAAAAGAAACCTCCGGGGTCATGTGACTGTGCATATTAAAAATGGAAGAAATAATATGGTGGTAATATAA
- Protein Sequence
- MQLPSSECRRRNLQTLINNTSVIPFKWRGKFLCFFCGIDIQKYHDLKEHMKIHVPCSSADRAMKLIRCGNETKVDVSETKCTVCSDELSDIDSLITHLKCKHMLWYDTNVSLTLTTYRLADLKCLVCDESFKLFRKLVRHMNKSHPHSFFQCDICRQTFNKKRYLSDHIRFSHLKDLNCSKCSLSFSCFQDLIKHKSKMHFSRCNLCFRMFSSYQKSLNHMKKEHQLNDGVECGFCKKQFHTKLTFLVHATKCQFSLKDDKTVVVVDDENKHEKVRDLRTSIAYIINMTAAMPFKFLRSKFRCFYCSKDFTVCGDLRQHTLSEHPVCETTLPAMKLRGRSEGIKIKVDTSSLNCQMCSERLTDFTAAINHLEVEHKVVLTKCIDMFRPFKLVHDKFCCGVCSSEFRYFSILLQHVNSSHSDNNFICTFCGKAFVSLITLRGHISYRHSNDKHKCKDCNRSFPTDDSLTIHMGRAHGRKLINCPQCVEKFISPYHKMRHIMKVHGGGHKCSFCGMAFAKYSYMINHVRRSHYKEKTVPCTICKELFFDKPSLKMHMVKHVGERSFCCDYCGKGFLRKRNLRGHVTVHIKNGRNNMVVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -