Esil016861.1
Basic Information
- Insect
- Ecliptopera silaceata
- Gene Symbol
- -
- Assembly
- GCA_932527285.1
- Location
- CAKOBM010000079.1:1616361-1619107[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.2 3.1e+02 2.4 1.6 2 23 4 25 3 25 0.88 2 18 3.4e-07 2e-05 25.0 0.8 2 23 134 155 134 155 0.97 3 18 0.00015 0.0087 16.7 0.1 5 23 165 184 163 184 0.94 4 18 0.1 6.1 7.8 0.2 3 23 192 212 191 212 0.96 5 18 0.00027 0.016 15.9 0.3 1 23 218 240 218 240 0.97 6 18 0.003 0.18 12.6 0.1 1 17 245 261 245 262 0.95 7 18 0.046 2.7 8.9 0.6 1 23 367 389 367 389 0.98 8 18 0.00011 0.0063 17.2 0.6 1 23 395 418 395 418 0.92 9 18 0.00028 0.017 15.8 1.5 3 23 426 446 425 446 0.98 10 18 5.9e-07 3.5e-05 24.3 1.4 1 23 452 474 452 474 0.99 11 18 0.0005 0.03 15.0 0.0 1 23 480 502 480 502 0.95 12 18 1.7 1e+02 3.9 0.0 6 20 512 526 511 529 0.94 13 18 0.098 5.8 7.8 0.1 1 23 535 558 535 558 0.95 14 18 1.4e-05 0.0008 20.0 0.1 1 23 582 605 582 605 0.96 15 18 8.8e-05 0.0052 17.4 1.2 1 23 611 633 611 633 0.93 16 18 0.0072 0.43 11.4 0.1 3 23 641 661 640 661 0.98 17 18 0.024 1.4 9.8 0.0 6 23 670 687 669 687 0.97 18 18 0.016 0.94 10.3 0.2 6 23 697 714 696 714 0.99
Sequence Information
- Coding Sequence
- ATGGAGCTCGTCTGTCACATATGTGATTCGAAGACTTCTAGCGAACTGTTCTACCAGCATTTGAGCTCGAAGCATGAGAGCGTTAGAGACAAAAACGACGTAGAATCATTTGTGAGAAACCACGTGACATTTGAAGATACACTCGATTCAGATTACGATGAAGATCATACTTTACGTAAGTCTCCATCGTCCGAAGCATCGGATGCGATCACGTTTTTATCCAGCTCGCGGCTCATGCGCCATCTACCTGAGCACGATGAGAACATCGATACTATTTCATGTCGCGACTCCTTGAAGAACCGGATCGAACTTACGAGCAACGTGAGCGACCAACATGCGAGGTCCGATGCCAGGTCACCTGAAGCGAAAGAGGAAACCAACCAGAAACGCATCCCGGCCGTCTGTCCGGAGTGCAACCGCACGTTTTCCAACAAGTACAATATGCTCGTCCACATGAAAACTCACAGTAACAAGAGCGAAAAGTTAGAGTGCGATTGCGGGAAGAGTTACACGACGCGCGGGAACCTGGCGGCGCATCGACGCGCGGCGCACGCGGCGCGCCCCGCGCACGGCTGCACGCGCTGCCCCCGCGCCTTCCGCACGCGCGCCGCGCGCGACGTGCACGCCCGCCTGCACTCGGGGGACCGGCCCTTCGCGTGCCCGATCTGCGCGCGATCCTTTCGCGCCAAGAACTCGCTCGATAGGCATCGAGAGACGCACGATCCGCCCCGCTACGAGTGCGAACTCTGCGGGGTTAGGTTCCGAAGGAGAGCGCATCTGAGGTCCGTCGCGTCGGAGGGCTCGCCGGATCGCGACTCGACCGCCTCGAGCGCGTCGCCGGCCGAGCTCGCGGCCTGCGACCCGCTCGCCGCGCTGCGCCGCGCGCTCGCCGACCTGCGCGACCACCTCGCCGAGCGGCACGCGCGCCCCGCCTCGCCCGCGCGCCCCCACGAGCGCGAGCGGCCCGCGCCCCCCGAGCGGGACGACCCGGAGCCGTTCGACGACCTCACGCGGCTCAACATGCGCCGCGACCGGTTCGACGAGGCCACGCGGCGCGCGCTCGACGCGGCGCGCGTGCGGGTCGAGGGGCGCACGCGCTACCGGTGCGCCGAGTGCGGCGCGCGGCTCGGCTCCGCGCACGCCTTCGTGCACCACTCGCGCATCCACTCGGGCGAGCGGCCGCACGTGTGCCACGTCTGCGGGAAGCGGTTCCGCGCGCCGCAGGGGCTCGCGCGCCATCTCGCCGAGACGCACGAGCGGCGCCGTCGCCGCGCCTGCCGCCTGTGCCGGCGCACCTTCGCCAACGACCAGAACCTGCGCCAGCACCTGCGCACGCACACCGGCGAGCGACCCTTCCGGTGCGCCGAGTGCGGCAAGCGGTTCGCGCAGAGCGGCTCGCTGCACGCGCACCGCCGCACGCACGAGCCGCGGCGCGCGCACGCCTGCCCCGACTGCGGCGCCGCCTTCCGCCTGCGCGCCGGCCTCGCGCGCCACGCGCTGCGCCACGCCGGCGCGCGCCCGTACCGCTGCGCCTGCGGCCGCGCCTTCGCCGCGCGACACGAGCTCGCCGCGCACCTGCCGCTGCACGGCGACGCCGCGCCGCACGCCTGCGCGCTCTGCCCCGCCGCCTACAAGCTGCGCCGCGCGCTGCGGGACCACGCGCGCCGCGCCCACCCCGCCGTCGCCGTCGCACCCGCCCCGCCCGCCGACCTCACGCGCGACTCGTTTGCAGGGGCGACACGGTTCGAGTGCGCATCGTGCGGGCGCACGTTCTCCGACGCGGCCAACCTCGGCCGGCACCGCCGCGAGGTGCACGCGGGGCGGCGCGCGCACGCGTGTCCCTCGTGCCCGCGCACGTTCTCCCGCGAGGAGCACCTGCGCGCGCACGCGGTCCGGCACGCGCCCGCGGCGCCGCTGCTGTGCGAGCGGTGCGGCGCGGCGAGCGCGTCGGCGGCGGCGCTGCGCTCGCACCGGCGCACGCACGCAGCGCGGCGGCACGCGTGCGCGTGCGGAGCGCGCTTCCGGCGGGCGGGCGAGCTGCGCGCGCACGCCTCGGTGCACGGCGGCGCGCGCCCGCACGAGTGCGCGTGCGGGCGCGCCTTCCGTCTGCGCGCGCAGCTCAACATGCACGCGAGACGCCACGCGGCGGCCGCGTGCCGAGGGTCTCCGGGCCTCCCCGACGGCGACCGATCGCTCGCGGCGCGATTCTCAGTCTCCGCGGTCGATTCTAATCGCGACTCCGACGCTGAACTTCGTGGACCTGATGGACTCGTCGGACTCCGAGTCGGAGCACGAGCCGGCGCGCGCGGGGGGCGCGGGGGCCGCGAGGGGCGCGCGGGGGGCGAGCCCGGCGCCGGCGCCCCCCGCGGCGCTGGAGGTGCTGGTGCTGGGCTCGTGGGCGCGGTAGTGCGTCCCCGTACTGCGCATGTTGTGCGTTGA
- Protein Sequence
- MELVCHICDSKTSSELFYQHLSSKHESVRDKNDVESFVRNHVTFEDTLDSDYDEDHTLRKSPSSEASDAITFLSSSRLMRHLPEHDENIDTISCRDSLKNRIELTSNVSDQHARSDARSPEAKEETNQKRIPAVCPECNRTFSNKYNMLVHMKTHSNKSEKLECDCGKSYTTRGNLAAHRRAAHAARPAHGCTRCPRAFRTRAARDVHARLHSGDRPFACPICARSFRAKNSLDRHRETHDPPRYECELCGVRFRRRAHLRSVASEGSPDRDSTASSASPAELAACDPLAALRRALADLRDHLAERHARPASPARPHERERPAPPERDDPEPFDDLTRLNMRRDRFDEATRRALDAARVRVEGRTRYRCAECGARLGSAHAFVHHSRIHSGERPHVCHVCGKRFRAPQGLARHLAETHERRRRRACRLCRRTFANDQNLRQHLRTHTGERPFRCAECGKRFAQSGSLHAHRRTHEPRRAHACPDCGAAFRLRAGLARHALRHAGARPYRCACGRAFAARHELAAHLPLHGDAAPHACALCPAAYKLRRALRDHARRAHPAVAVAPAPPADLTRDSFAGATRFECASCGRTFSDAANLGRHRREVHAGRRAHACPSCPRTFSREEHLRAHAVRHAPAAPLLCERCGAASASAAALRSHRRTHAARRHACACGARFRRAGELRAHASVHGGARPHECACGRAFRLRAQLNMHARRHAAAACRGSPGLPDGDRSLAARFSVSAVDSNRDSDAELRGPDGLVGLRVGARAGARGGRGGREGRAGGEPGAGAPRGAGGAGAGLVGAVVRPRTAHVVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -