Esil008787.1
Basic Information
- Insect
- Ecliptopera silaceata
- Gene Symbol
- -
- Assembly
- GCA_932527285.1
- Location
- CAKOBM010000041.1:307520-311801[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00035 0.021 15.5 2.6 1 23 149 172 149 172 0.96 2 13 1.7e-06 0.0001 22.8 2.2 2 23 188 209 187 209 0.97 3 13 7.4e-08 4.4e-06 27.1 1.7 1 23 216 238 216 238 0.98 4 13 3.4e-06 0.0002 21.9 3.2 2 23 244 265 244 265 0.98 5 13 6.8e-06 0.0004 20.9 1.2 1 23 271 293 271 293 0.97 6 13 3e-06 0.00018 22.1 0.3 1 23 299 321 299 321 0.97 7 13 6.3e-05 0.0038 17.9 0.2 1 23 326 348 326 348 0.98 8 13 1.5e-07 9.1e-06 26.1 0.8 1 23 354 376 354 376 0.99 9 13 1.3e-05 0.00075 20.1 1.5 1 23 382 404 382 404 0.98 10 13 1.2e-06 7.2e-05 23.3 1.3 1 23 410 432 410 432 0.98 11 13 2.6e-06 0.00016 22.2 0.4 1 23 438 460 438 460 0.95 12 13 5e-05 0.003 18.2 0.6 1 23 466 488 466 488 0.98 13 13 7.1e-07 4.2e-05 24.0 4.8 2 23 496 518 495 518 0.96
Sequence Information
- Coding Sequence
- ATGTCCACATATGTATGCAGAGTGTGTTTGTCCGGCAATCTCAGAATGAATTACATTGATGATATTGAACTTCAAAATATTTTCGAAAAACTTACAAATATCAAGTTGAGTTCCTTCGGAGGCGCTGATTACATGTGCTTCTTATGCTACGCTCAGCTGCAGCGATGTCGGCGCTTCGCCACCCTCGCGCGGCGCTCCGCCCTTCTACTCACTCATATATTGGACACGGGCGGCCAGGCTACTCAAGAAACGTTAGCAATGTTGAAACTCGAACCTACACCAGCACTTACCATCACCACTCCTGACTCCATGCCTACAATAGATCTAGAACACTCGGACATTCCCGTCAAAGAAGAACTCACCATCAAAATGGAATCCTCCGACGACCAGAATGATGAAAAAACTGTAAAAGTCGAAGCATTCTGCAGCGATACAGAGGAATCTCACATATGTGATATTTGCAGTAAGACTTTTAATACAACAACCAGACTAATATCCCACTATCGTCGAATACATTCTTGCAAGCCAAGAAAAAAGTCTGAGAAGTCTGAGAAACCGTTGAGCTGTGAAATCTGCAATAAAACATTCACATTCAAATACAATTATGAACGACATAAACGAGTCCACGAATTGGGTGATAAACCATATTCCTGTGATATCTGCAGTAAGACATTCTCCAGAAACAGCAACTTGAAGCAGCATCGTCTAATACATTCTGTTGAAAAGCCTACGTGCCCGCAATGTAATCTAACATTCACCTATAAACGACATTTACGAGAACATATGAGAATTCACGCAGGAAAACCAACCTTCTCGTGTAACAACTGTGATAAATCCTTCACCCGAAGCATATATTTAGAAGAACATAGTAAAATACACAGCGGTGAACGTCCGTATGCTTGCAATGAATGCGACAAAGCATTCCCATACAAGAAGTTACTAAAAGCTCATAGTAGAATACACGGAGTGAAATCCTACACATGTGATCAGTGTGACAAAGCTTTCCCGATGAGAATAAGGCTGATCAGACATATGGTGATGCATTCTCAAGACAAGCCGTATACCTGTGATCGGTGTGCGAAGGCCTTTACAACGTCAAGCAATCTACAACAGCATATGATCACACATACGGGGGAACGACCTTATTCCTGTGATAGATGTGACAAAACCTTCGCCCGCAAACAAGAGGTCAAAATGCATTATCGAGTACACACGGGCGAGAAGCCCTACATCTGCTCCGTCTGCAACAAACAATTCTCACAACGAAGCACATTGAACGTACACAAACGCATCCATTCCGGAGAACGTCCCTACGCTTGCGAAATCTGCGGCAAAACTTTCGGCGATAAATATACTTTTCGCAAACATATAGTTTTACATTCTGGGGCGAGACCATTTGTATGTCAGCAATGTGGTAACGCGTACAGTTCTAATAGCAGCCTGTATGTACATTCACGCACACATAGACCCCCAACGCACACATCGCCGTGTCATGTTTGTAGTAAGACGTTCACTAATAATAGTCATTTGAAGCGACATCTAAGGAATGTGCATAGAGATCAGGGAGAGGCTATTTTAAACTAA
- Protein Sequence
- MSTYVCRVCLSGNLRMNYIDDIELQNIFEKLTNIKLSSFGGADYMCFLCYAQLQRCRRFATLARRSALLLTHILDTGGQATQETLAMLKLEPTPALTITTPDSMPTIDLEHSDIPVKEELTIKMESSDDQNDEKTVKVEAFCSDTEESHICDICSKTFNTTTRLISHYRRIHSCKPRKKSEKSEKPLSCEICNKTFTFKYNYERHKRVHELGDKPYSCDICSKTFSRNSNLKQHRLIHSVEKPTCPQCNLTFTYKRHLREHMRIHAGKPTFSCNNCDKSFTRSIYLEEHSKIHSGERPYACNECDKAFPYKKLLKAHSRIHGVKSYTCDQCDKAFPMRIRLIRHMVMHSQDKPYTCDRCAKAFTTSSNLQQHMITHTGERPYSCDRCDKTFARKQEVKMHYRVHTGEKPYICSVCNKQFSQRSTLNVHKRIHSGERPYACEICGKTFGDKYTFRKHIVLHSGARPFVCQQCGNAYSSNSSLYVHSRTHRPPTHTSPCHVCSKTFTNNSHLKRHLRNVHRDQGEAILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00686553;
- 90% Identity
- -
- 80% Identity
- -