Basic Information

Insect: Ecitophya simulans
Gene Symbol: ush
Assembly: GCA_027574965.2
Location: JAODGE020002762.1:1-4185[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.039 5.4 8.0 0.1 1 20 128 147 128 149 0.92

2 8 6.6e-05 0.0092 16.7 3.3 1 23 193 215 193 215 0.99

3 8 0.17 24 6.0 0.8 3 21 269 287 268 288 0.92

4 8 0.039 5.4 8.0 4.8 2 21 572 591 571 592 0.95

5 8 0.036 5.1 8.1 0.0 3 20 632 649 630 651 0.91

6 8 0.079 11 7.1 0.0 2 23 687 708 686 708 0.96

7 8 0.0038 0.53 11.2 1.3 1 23 714 736 714 736 0.99

8 8 0.02 2.8 8.9 3.9 1 23 792 815 792 815 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.039	5.4	8.0	0.1	1	20	128	147	128	149	0.92
2	8	6.6e-05	0.0092	16.7	3.3	1	23	193	215	193	215	0.99
3	8	0.17	24	6.0	0.8	3	21	269	287	268	288	0.92
4	8	0.039	5.4	8.0	4.8	2	21	572	591	571	592	0.95
5	8	0.036	5.1	8.1	0.0	3	20	632	649	630	651	0.91
6	8	0.079	11	7.1	0.0	2	23	687	708	686	708	0.96
7	8	0.0038	0.53	11.2	1.3	1	23	714	736	714	736	0.99
8	8	0.02	2.8	8.9	3.9	1	23	792	815	792	815	0.97

Sequence Information

Coding Sequence: GAAGACGAGGAATGGGCCGCggacgccgccctcgccgtcAAGGACGCGGACACTCAAGATGGCAAGTCCGAAGAGGCGaagacaccgccgccgctcgacgagaAGAGACCGCCCAGAATGGAGGACTCGCCCGGCGCACCGCGAATACGCCTGAACACGACGTTGGCGACCGACCCGGCCCTGCAAgcgcccgtcgtcgccgcaaAGAAGGACATCGCCGAGGAGACGTCTCTGATACCAAACCTGCTTGCTGGCTACCTGCCAACGGACAAAGCATTTGCCAACGCTAGAAACTTCCTGTCGCTCCAGGCGTTGCTCAATAACGTCGAACCACCAGCGCGGGTCGAGGCTGCTACGCCCACGCAACCTTCTCCGAGCGGGTTCACGTGCGTGCCATGCGGCATTCGTTATTCCTCGATGAGCACCCTGGAAGCGCATCAAACGTATTACTGTTCGCATCGTGCCAACAAGAACGCCGATGACGACGCGAAGACGACCAACGGCGAACCCAGCGGCCACCAGTCGGATGCCGACCCCTCCGAGGGGGCGCCGAAAGCGGCGAAAACCGGCAAACAGTACACCTGCACGCATTGCTCGTACAGCGCGGATAAAAAGGTCAGTCTGAACCGGCACATGCGCATGCACACAGTCTCTCCTAGtcctgccgccgtcgccgtgcccAGCGTGCCGACGATCGTGCCCAACGGCGAGGTGCTCACCGCGAACATCGCCGCCAACGTGGCAgcggtcgcggccgccgccgccgccgccgccgccgccgcttccgaTAATCAGGATAGATATTGCACGGCGTGCGACATACGCTTCAACTCGTTGAAAACGTACCGAGCGCATAAGATGCATTATTGCAGTTCGCGGCACATGATAAAGCAGGCCGGCGGGAAGGCCGCGTCCTCCTGCAATTCCGGCTCGACGCCCACATCACCCGTAGACACTACGTGCcagtcgccggcgtcgcccgGAACGTCGGCTCCCGGCGCAGCGGCCAActcacagcagcagcagcagcccgtCTTGGCCCTGCCAACGAACCCAATCATCTACGTGCCATTTTCGCTTCTACGCGGAGCCAGCATGTTGCCCGACATGATCCCCACGATTTCCGGTGCGCCGCCGGTTATTCTCCTCCCCGACGGTACCCTACAGCCGATGCCGATGATGCTGCCGCAGGTCGCTAACACGGAAGTGCTGAAATCGGCGAACAAAGCCAAGGAACCGCCGGCGAACAGAGGCGACCCCGGTGCGCCGTTGGATCTGTCCGTGAGGAAAACTCCCGATgcgaacaaaatcaaaaacgaGAATAACGAGCACGAGAAAGAGAACATCAAGCAATACAACCCCTCGGAGAAGTCGGACAATGCTTCGTCGCATGCATCGCGGCCGGTAACGCCGTCTTCTcacacgtcgtcgacgtcgccgaaaagAAAACACGACGACCGAGGGGACGCTACTTCCAGGAGTAACAGTCCACGCATGGTACGACCGAAGTCTTCCGATCCGGATCGAAGGACCAGCCCCGATGCCCCGACGGTACCATTTGCGTTGCAGAACATCAGCAGCATTTTGCTTCGCGGTGCGAACCTGGGCACAGCGTTGCTTCCGCCGGAGGTACAACTCCGGTTGGCCGGGGCCGAATTACCAACGCTGCCCGCAGTGACCACACCGCAGATCTTGGTGAAACAGGGCGTCTCCAAGTGCAAAGAATGCAACATCGTATTTTGCAAGCACGAAAATTATCTGGTTCACAAGCGGCAttattgttcggcgcgcgtgcacgaCGACGAAGCCTCCCGCACGTCCGGCAGCCCACCCGTGAGTCCCGGAAGTGCAGGAGCCACTAGTCCTGCGGCAGCGCAATACCAGCAGTTGATCTGTATGGCTTGCGGCACCAAGTTCGGATCTATAGACAACCTCACGGCGCATCAAGCGTATTACTGCACGAAGAGGAACCAGGACGTTGCAAGGTGTACCAAATGCAGGGCGATTGCGGAACCGGGACATCAGTGCGCCGTGCCTGCCGGTCCCGTGAGTGGGTGGAAATGCCCGCGGTGCGATGTCGTCAGTCTCACTCCCAGTGCCGCTCAGCGGCATATGGAATCTCATTCGGGAGTCAAGGCTTACAGATGTACGATCTGTAGGTACAAGGGTAATACGTTGCGAGGAATGAGGACTCATATTCGGATGCATTTCGATAAACGATCACCAGATCTTCAGGAGGAAAAGTACATCTCATACATCTTCGAGGACGATGCCCAAAACACCATCGAAGTGAacatcgcgccgtcgtcgaccaCCTCCAACGCCGACGATCGCaccacgtcgccggcgtccgaAGGAAGAGCAGAAACCGTGCATCAGTGTTCGCATTGTTCCTTCACCGCCTCCAGCAAGTCGAGCATCGTCCGCCACGTGAAGATGATGCACACGCCCGCGGAGCCGCCTCCGACTAACGGCACCTGCGTGCTACCCGCGCCCAACG
Protein Sequence: EDEEWAADAALAVKDADTQDGKSEEAKTPPPLDEKRPPRMEDSPGAPRIRLNTTLATDPALQAPVVAAKKDIAEETSLIPNLLAGYLPTDKAFANARNFLSLQALLNNVEPPARVEAATPTQPSPSGFTCVPCGIRYSSMSTLEAHQTYYCSHRANKNADDDAKTTNGEPSGHQSDADPSEGAPKAAKTGKQYTCTHCSYSADKKVSLNRHMRMHTVSPSPAAVAVPSVPTIVPNGEVLTANIAANVAAVAAAAAAAAAAASDNQDRYCTACDIRFNSLKTYRAHKMHYCSSRHMIKQAGGKAASSCNSGSTPTSPVDTTCQSPASPGTSAPGAAANSQQQQQPVLALPTNPIIYVPFSLLRGASMLPDMIPTISGAPPVILLPDGTLQPMPMMLPQVANTEVLKSANKAKEPPANRGDPGAPLDLSVRKTPDANKIKNENNEHEKENIKQYNPSEKSDNASSHASRPVTPSSHTSSTSPKRKHDDRGDATSRSNSPRMVRPKSSDPDRRTSPDAPTVPFALQNISSILLRGANLGTALLPPEVQLRLAGAELPTLPAVTTPQILVKQGVSKCKECNIVFCKHENYLVHKRHYCSARVHDDEASRTSGSPPVSPGSAGATSPAAAQYQQLICMACGTKFGSIDNLTAHQAYYCTKRNQDVARCTKCRAIAEPGHQCAVPAGPVSGWKCPRCDVVSLTPSAAQRHMESHSGVKAYRCTICRYKGNTLRGMRTHIRMHFDKRSPDLQEEKYISYIFEDDAQNTIEVNIAPSSTTSNADDRTTSPASEGRAETVHQCSHCSFTASSKSSIVRHVKMMHTPAEPPPTNGTCVLPAPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00630047;
90% Identity: iTF_00631729;
80% Identity: -