Esim019759.1
Basic Information
- Insect
- Ecitophya simulans
- Gene Symbol
- topi
- Assembly
- GCA_027574965.2
- Location
- JAODGE020029661.1:1131-3368[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00056 0.078 13.8 3.1 2 21 132 151 131 152 0.94 2 13 1.6e-06 0.00022 21.9 1.2 1 23 177 199 177 199 0.98 3 13 0.0037 0.51 11.2 1.9 3 23 207 227 206 227 0.95 4 13 1.6 2.2e+02 3.0 0.0 2 19 246 263 245 266 0.75 5 13 3.4e-05 0.0047 17.7 0.9 2 23 314 335 313 335 0.97 6 13 1.5 2.1e+02 3.0 0.0 1 21 341 361 341 362 0.91 7 13 2.5 3.5e+02 2.3 0.3 1 23 508 531 508 531 0.94 8 13 0.00087 0.12 13.2 0.1 1 23 535 557 535 557 0.97 9 13 6.3e-06 0.00088 19.9 5.4 1 23 563 585 563 585 0.98 10 13 0.013 1.8 9.5 0.2 1 23 591 616 591 616 0.96 11 13 0.06 8.3 7.4 3.1 1 23 622 644 622 644 0.86 12 13 5.2e-07 7.2e-05 23.4 0.3 1 23 650 672 650 672 0.98 13 13 2.9e-06 0.00041 21.0 1.0 1 23 678 701 678 701 0.98
Sequence Information
- Coding Sequence
- ATGAATCGCGACACGAACGTGATGTACCAAATAAAAGTGCAGCGCATCGCCGGTGCGTTGGAAACGCGCAGCGTCGAGTTGCTGAAAATCGACAGCCGGTCGCATCAagtcgcctcgcgcgcgccgctcgcgtcgtcggaggcggcgcagccgctgcggctgctggacgacgccgacgccgacgacgacggcgtccgcCTGCGCTTCGACAAGAAGTTCACGCACTTCAGCTTCAGCGACTCGTCGGTGCGCGTGatacgcgtcggcggcgtcgaggagcTCAATCCGCTGAACTatgcgccggacgcgcgcggcgcgccgcccccgcccgccgacgccggcggcggcggcggcggcaaggagTCGAAGATACCCAACATTCCGATGATGACGCGCTGCCAGAACTGCGACACGAACTTCCCCACCAAGTACCAGTTCCAGCGGCATCAGTGCGAGTTCAACGCCGACAAGGTCGTCCTCAAGCCGAacgtggacgcgcgcgacgtcgagaaGGGCCTGCGCATGAAGTTCGAGTGCAAGACGTGCGGCAAGCTGTTCGTCAGCAAGAACAACCTCGAGCGCCACCTCACCAGCCACGACGAGGACAACGTGAACATCTGCGAGTACTGCAACAAGCACTTCGTCAGCGAGAACCGGCTGCGCATCCACAAGGAGAACCACTGCAAGAAGACGGGCGACATCAGCAAGTTCTATCGCAGCGACGTGATGGTCTGGCGGTGCGGCAAGTGCTTTCAGGTGTTTGCGTCCGAGTTGTACGCGatcgcccacgcgcgcgcgtgcgtcgaccgcgtcgccgacgcgatgtcGGTGGACGAGGCGAACGAGGACGTCGCCGAGGTGGTGGGCGCCGAGGGCAAGCagcccgccgacgaggaggagggcCAGCACGTCGTCAAGGTGCGCAccgagctgctgctgcagtgcGAGTTCTGCAATCGGACGTACGCGAACAAGAAGTCGCTGCTGTGGCACCAGGACACGCACACGACGGCCGTCAACTACAACTGCGTCGtgtgcgcggcgacgttcgtcTCGTACGCGTCGGCCGCCAAGCACTGGCTCACCGACTGCACGAACCAGGCGAACCTCTTCTTCCTGCCGAAGCTGATCTACTGCCAGTGCTGCAATCGCACGTTCAAGTCGCACGAGATACTCTATCTGCACAAGATCAAGAAGAAGCACTACACGCCGAAGCGGCACTGCGCGCCCGAGCTGCCgaaggtggaggcggcgggcgatgGGGACGAGCCGCGCGAGAAGCGCGCCAAGCCCGAGAGCATCAACAGCAAGGAGACGATCATCCAGCTCATCGACAACGTGCTGGGGCCGGCGAGCGCCAAGGACGACgcggacgccgacggcgacgacaagagcggctcgccgccgccgccgcccgccgacgccgaggggCGCAAGCGGAAGCGCGGCCGAAAGCGCAAGCCCGCCGCGCAGACGAGCAAGGGCCGCAAGTTCGTCGCGGACGTCGAGGACGGCTACAAGTACCAGTGCGAGCGCTGCATGGCGCTGTTCAACACCGTGATGGACATGGAGATACACAGGAACAAGGACCATCCGGCGAACTACAAGTGCGAGGAGTGCGACCAGGTCGTGCAGAGCTCGAAGGCGCTGATGATTCACAGCCGCGCGCACCAGAGCCTCAAGCCGTACGTGTGCGAGATCTGCAAGCGATGCTACTCGCAGACGTCGCACCTCTGGCAGCACATGCGCTTTCATCAGGGCATCAAGCCGTTCGCGTGCCCGCACGAGGGCTGCGAGGCGCGCTACACGATCCGGCCGGACCTCAAGGACCACATCCGCAAGGTGCACACCAGGGAGCGGCCGTTCAAGTGCACCGTCTGCGACAAGTGCTTCCTCACCGGCTCGGTCTACTATCAGCATCGGCTGATACACACGAACGACAGGCGATACGCCTGCGACATTTGCGATAAGCGCTtctttcgcgccgacgcgctcaaCAATCATCGCCGAATACACACCGACGAACGCCCGTATCCGTGCACGGTCTGCGGACGCAACTTTAGACAGAAAGGCGACAGGAACAAGCACGTCCGAACGCAACATCCCGACATACAAATCTGA
- Protein Sequence
- MNRDTNVMYQIKVQRIAGALETRSVELLKIDSRSHQVASRAPLASSEAAQPLRLLDDADADDDGVRLRFDKKFTHFSFSDSSVRVIRVGGVEELNPLNYAPDARGAPPPPADAGGGGGGKESKIPNIPMMTRCQNCDTNFPTKYQFQRHQCEFNADKVVLKPNVDARDVEKGLRMKFECKTCGKLFVSKNNLERHLTSHDEDNVNICEYCNKHFVSENRLRIHKENHCKKTGDISKFYRSDVMVWRCGKCFQVFASELYAIAHARACVDRVADAMSVDEANEDVAEVVGAEGKQPADEEEGQHVVKVRTELLLQCEFCNRTYANKKSLLWHQDTHTTAVNYNCVVCAATFVSYASAAKHWLTDCTNQANLFFLPKLIYCQCCNRTFKSHEILYLHKIKKKHYTPKRHCAPELPKVEAAGDGDEPREKRAKPESINSKETIIQLIDNVLGPASAKDDADADGDDKSGSPPPPPADAEGRKRKRGRKRKPAAQTSKGRKFVADVEDGYKYQCERCMALFNTVMDMEIHRNKDHPANYKCEECDQVVQSSKALMIHSRAHQSLKPYVCEICKRCYSQTSHLWQHMRFHQGIKPFACPHEGCEARYTIRPDLKDHIRKVHTRERPFKCTVCDKCFLTGSVYYQHRLIHTNDRRYACDICDKRFFRADALNNHRRIHTDERPYPCTVCGRNFRQKGDRNKHVRTQHPDIQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -