Esim020427.1
Basic Information
- Insect
- Ecitophya simulans
- Gene Symbol
- -
- Assembly
- GCA_027574965.2
- Location
- JAODGE020030564.1:949-3928[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00043 0.06 14.2 1.8 1 23 270 292 270 292 0.91 2 13 0.0094 1.3 10.0 0.8 1 20 297 316 297 321 0.91 3 13 0.00027 0.037 14.8 0.6 2 23 362 384 361 384 0.94 4 13 0.00066 0.092 13.6 1.2 1 23 390 412 390 412 0.94 5 13 7.5e-06 0.001 19.7 1.7 1 23 417 440 417 440 0.95 6 13 0.00027 0.038 14.8 3.8 1 23 446 468 446 468 0.95 7 13 7.4e-05 0.01 16.6 0.2 3 23 476 496 474 496 0.98 8 13 2e-05 0.0028 18.4 2.6 1 23 502 524 502 524 0.97 9 13 4.7e-05 0.0065 17.2 0.4 1 23 530 552 530 552 0.98 10 13 1.3e-05 0.0018 19.0 6.0 1 23 558 580 558 580 0.97 11 13 0.01 1.4 9.9 4.8 2 23 587 608 586 608 0.97 12 13 0.0001 0.014 16.2 1.8 1 23 614 636 614 636 0.98 13 13 1.2e-08 1.6e-06 28.5 0.5 1 23 642 664 642 664 0.98
Sequence Information
- Coding Sequence
- aTGGACGTGCCGCTAAAACTCTACGATTCCCTCGTTTGCCGGCTGTGCGCCGAAGAGAACAACAACGGGAGTCACATCTACGACTCTTTCGACGGCGCGGAGAAGCTGGGCGACGTGATCAACAAGTATCTGCCGCTGAAAGTAGCGAACGATGGCAAATTTCCTTGCACGTTGTGTCCTGGCTGCACAATTCAACTGGAAGCAACAAAGTCCTTCTTTGACTTGATTGTTGATGGCCAGAGAAAGTTGCAAACGCTGCTCAATGAACAGCATGGTAAGATTCAACTTGATGAGTGCGGCAAGGAGCAGTTGGAGAGCGCACTGAAACTAGTCAATCCGAACAGCTCAGTGCAGACTTATTCTGTGCAGTCCGATGAAAGTGGTCagaaaatattcatacaaaTTTTGTCGGATGGACCCTTATTTTCACCTGACCATGAACTATCTGTGAAGTTGCATGACAAGCCTAAAAAGAAAAGGGGCAGACCACCTAAAGCTATTACTGATGGCACAGAAGAGGGCAGAATGGTGGAATACAAGAAAGAAGAGGCAGAACCTAATCTGCAGCCTGAACCAGAGCTGGAAGAGCAAGTTGATGCTCTGGGAAAACCAAAAAGGAGGATTAAGAAACCATTAAAGTATTCCGACCTCATTCAAGGTAAGGAATTGGATAAAATGTTCTCGGATGAAGGCATTAATGATGATGATCAACCACCtacaattatattaaagtCTGAAGACCAAACTTTTGCCAGTTCTGAGGCATTAATCAATCAGAAAGTTAAGAAGGCCCCTGGTAAAAAGCCGTTTGAATGTGAAATATGTGGCAGAACTTTCCAAAATCACAGCAGACTGGAAATGCACAAGGTGTTCCACAAGGACGTTTTCTATCAATGCGTTACATGTTCGCAGACGTTCGACTCGAAGGAGTTGTTCAGCGCGCATTCGCAGGAATCACAACATAAGAACTTCAAATTGATTGAATATGTTGATAATTATGGTCAAATTGAATTGCCAACGTCCGTTGAAAAAGACCTAACACCCATCAAACAAACTGAATTGCCCGAGACGTCCGAAAAAGTCAAGTGCGAACTGTGCGAGAAGATTTTCGCCACGAAGCAGAACCTCGACGTGCACCACAAGGCGGTCCACAACGGCATGAAGACGTACGCGTGCGACAAGTGCGACAAACAGTTTCCGTACGTCTCTAGCTTTAAGAATCACTCGCTGCAGCACGCGTCGAAGGCGCACGCGTGCGACCAATGCGACAAGGTGTTCAGTCATCCGTCGAGCCTGGTCTATCATCGCGAGACCGAGCACAACAACGGGCGCGTGTTCGTCTGCATCAAGTGCAAGAAGTCGTTCAAGCAcaagcagctgctgctgcgccaTCAGCTGGTGCACTCGTCGGAGCGGCCGTACGGCTGCACGGTGTGCAAGGCGGCGTtcaagacgcgcgcgaacatgATCAACCACATGGCGACGCACACGAAGGAGAAGAAGTTCTTCTGCACCGAGTGCGGCCTGTGCTTCCCGTACAAGACGTCGCTGAACCTGCACCAGCGCTGGCACAGCGGGCAGAAGGACTACGAGTGCGACGTTTGCATGAAGACGTTCTCGCAGCGCGGCAACATGGTGGAGCATCGGCGCATCCACACCGGCGAGAAGCCGTTCTGCTGTTCGTACTGCGGACGGCGCTTCACGACGTCCTCGCAGTACAAGCTGCACGTGAAGAGGCACACCGGCGAGCGGCCGTGGCGGTGCGAGTATTGCTCCAAGACGTTTCTGCACAAGAACACGTGGAAGAGTCACACGCGCCGGCACAGGAACGAACGGCCGTATCAATGTTCGCATTGTTTGAGAGGATTCACGGAACAATGGGCATTGAAGAAACACGAGCGTCTGCACACCGGCGAAAAGCCGTACTCCTGCGACGTGTGCGGCAAATCATTCGCGGACTCCTCCAATCTGAAGAAACACGCCAAGTCGCACTTCAAGAATCAAAACGTCGCCGAACTGCTGAAGCGCAACGTGGAATCGACGATCAACGACGACGGGCAAGTCCTCTATCTGACTTATGACGGAAGCGAGGAGAATCAACACGCGTTGGTGCAGGCCGTCAAAGGCCTGCACAgcaacgacgtcggcgacgacgacagcggcgaGCATCTGTTCGGCGAGGAGTTGATGCAGGGCGCATCGACCGACGAGATATCCATCGACGTGCAGCAATTGGTCGATAACGACGGTAACGTGATAAGCATTACCACCGACGACGGGCAACAAATCAAAGTCGTCACCAC
- Protein Sequence
- MDVPLKLYDSLVCRLCAEENNNGSHIYDSFDGAEKLGDVINKYLPLKVANDGKFPCTLCPGCTIQLEATKSFFDLIVDGQRKLQTLLNEQHGKIQLDECGKEQLESALKLVNPNSSVQTYSVQSDESGQKIFIQILSDGPLFSPDHELSVKLHDKPKKKRGRPPKAITDGTEEGRMVEYKKEEAEPNLQPEPELEEQVDALGKPKRRIKKPLKYSDLIQGKELDKMFSDEGINDDDQPPTIILKSEDQTFASSEALINQKVKKAPGKKPFECEICGRTFQNHSRLEMHKVFHKDVFYQCVTCSQTFDSKELFSAHSQESQHKNFKLIEYVDNYGQIELPTSVEKDLTPIKQTELPETSEKVKCELCEKIFATKQNLDVHHKAVHNGMKTYACDKCDKQFPYVSSFKNHSLQHASKAHACDQCDKVFSHPSSLVYHRETEHNNGRVFVCIKCKKSFKHKQLLLRHQLVHSSERPYGCTVCKAAFKTRANMINHMATHTKEKKFFCTECGLCFPYKTSLNLHQRWHSGQKDYECDVCMKTFSQRGNMVEHRRIHTGEKPFCCSYCGRRFTTSSQYKLHVKRHTGERPWRCEYCSKTFLHKNTWKSHTRRHRNERPYQCSHCLRGFTEQWALKKHERLHTGEKPYSCDVCGKSFADSSNLKKHAKSHFKNQNVAELLKRNVESTINDDGQVLYLTYDGSEENQHALVQAVKGLHSNDVGDDDSGEHLFGEELMQGASTDEISIDVQQLVDNDGNVISITTDDGQQIKVVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00631655;
- 90% Identity
- iTF_00631655;
- 80% Identity
- -