Basic Information

Gene Symbol
ct_1
Assembly
GCA_027574965.2
Location
JAODGE020007932.1:1-3428[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.3e-32 1.4e-28 99.1 0.0 3 77 298 373 296 375 0.96
2 3 1.2 6.8e+03 -2.5 0.0 41 65 394 418 376 418 0.83
3 3 1.2e-30 6.9e-27 93.6 0.0 3 75 507 580 505 584 0.95

Sequence Information

Coding Sequence
TATTTTTCGTCCTCAGGCAAAGAAAGCGCCGGCGGCAtgccgccgttcggcgcgcgccccgatgCCGACCTCACCGACGAGCGGCTCGCGCACATCCTTAGCGAGGCGCAGCACATGCAGAtgaagggcggcggcggcggccaggaGCCGGACGCGCTGAGCAACGACGACTCGAAGTCGCCGCACGGCCAGTGCCGGTCGCCGTTCAGCCGCGACTCGTCGCAGAACCGCCGCCTAAAGAAGTACGAGAACGACGACATTCCCCAGGAGAAGGTCTACAAGATCTATCAGGAGGAGCTAGCCAAGATCATGGGCAAGGAcatgcgcggcgccggcgcgttccaGGGTCTGTTTCTTCCGCAACTGTTTAGCGGCAACCCGCTGGATCGCACCCAGGACGAGATACGCATGACGCTCGAGGCGTACCACCGTGAGATGCTGAAACTGAATCAGGGCCAGGGGCTGAGCAACCTGGGCATCTTGGCCCtgcagcagcaggcgcaggCGTTGGCGCAGCAGGGCCCGCTCAACGGCGGCGTGCAGGACCTGTCCATTCCCAAGGAGGCGAAGAGCAAGTGCGCCGACGAGAAGGAGAAGCCCGACGACGATAAGCACGGCGCTGGCTCGGCGTTCAGCTTGGTCCGGCCGAAGCCTGAaccgacgacgccgctgccCAGCTCGACCGCCTCCAGCCCGCTGGGCAACACGATCCTGCCGCCCGCTACCGCCGAGGAGttctgcgcgtcgtcggtggCGTCGCCACTGCAGCGCATGGCGTCCATCACGAACTCGCTCATCTCGCAGCCGGCCGCGCAGCCGCACCACAACGCGTCGCAGCGTCCGCTCAAGGCCGTCCTGCCGCCCATCACGCAGCAGCAGTTCGACTTGTACAACAATCTTAACACCGAGGAGATTGTCAAAAAGGTCAAGGAGCAGCTGAGCCAGTACTCCATCAGCCAGCGGTTGTTCGGCGAGTCCGTGCTGGGGCTGTCGCAGGGCTCCGTCAGCGACTTGCTCGCGCGGCCGAAGCCCTGGCACATGCTCACGCAGAAGGGACGCGAGCCCTTCATCCGGATGAAGATGTTCCTCGAGGACGACAACGCCGTGCACAAGCTGGTCGCCAGCCAGTACAAGATTGCGCCCGAGAAACTGATGCGCACCGGCGGCTATGGCGGCGCCTGCGCTACCGTCAGCAAGCCGATGCCGCCGAAGATGCTGTGCGAGGCGGCTGGACTGTTCAACAAGatgcagcaggagcagcagaaCCTCTTGCCGCCCTCGTTGCAGCTCCAGCACCCGAatccgcagccgccgccgccgccgatgctgCTGACGCCGCCGGGCGTGCCGCCGCATCACGCCATCAACCTGCAGaactcggccgccgccgccgcggagcACATGAAGAAGAACCAGAGCCCGCACGTTCAACATTCCCCGGTAGGTCCGGCGCAGAGCGCCATGCGCAGCCTGCATCAGCACATTTCCCCCAGCGTATACGAGATGGCCGCGCTCACGCAGGACCTGGACACGCAGATCATCACGACCAAGATCAAGGAGGCCCTCCTTGCAAACAACATCGGTCAAAAGATTTTCGGCGAGGCCGTGCTGGGCCTCTCTCAGGGATCCGTCAGCGAGCTGCTGTCGAAGCCCAAGCCCTGGCACATGCTGAGCATCAAAGGCCGCGAACCGTTCATCCGAATGCAGCTGTGGCTCAACGACGCCCACAACGTCGACCGCCTCCAAGCGCTGAAGAACGAACGTCGCGAGGCGAACAAGCGTCGCCGGTCGTCGGGGCCGGGCGCGCACGACAACAGCTCGGACACCTCGTCCAACGACACCTCCGAGTTCTATCACTCGAACTCGCCGGGACCGGGGCCTGGCATGCCGTCGGCGAAGAAGCAGCGCGTGCTGTTCAGCGAGGAGCAGAAGGAGGCGCTGCGGCTGGCGTTCGTGATGGACCCGTATCCAAACGTGACCACGATCGAGTTCCTCGCCCAGGAGCTGAACCTTTCCAGCCGCACGATCACCAACTGGTTCCACAACCATCGCATGCGCCTCAAGCAGCAGGTGCCGCACGGCCTCGCCAACGacctgccgccgcgcgaccaGGCCGGCGGCCAGCCTCCGTTCGACCCGATGCAATTCCGACTGCTACTCAACCAAAGACTCATAGAATTATCGAAAGAACGCATGGGCCTCGGAGGCGTCGGCCTGCCGTACCCGCCGTACCTGGCGACGAACCCGAACCTCGCGGCGCTGATCGGCCGCGGCATCCTGCCCACCGGCGACGAGCTCGCCGCGCTGAACAACGCCGTCAAAGAGCAGATCAGCGGGCTGGACCTCTCGATGGGCGCGCTCAAGCGCGAGCCGGGCGacttcgacgacgaggacgagctcGAGTCGAACGCCGGCTCCGACGACTCGAACGTCTCCGGCGCCTCCATGCGCGGCGAGCCGAAGCCGGAGCCGAAGGAGACGCCGGTGcaggcgcgctcgtcgcggcggaaacccgccgcgccgcagtgGGTGAATCCCGAGTGGCAGGACGAGAAGGAGaagccggccgccggcgacgaggtgaTCATCAACGGTGTGTGCGTGATGCAGACCGAGGACtacggccggcgcggcgccgaggagACCGTGCGCGTCGAACCCACGCCCGTGATGGACCGGTACGATGACGACCAGAGCGACGCCTCGTCGATGCGGAGTCAGCGCGACCAGGCGGAGGTCaagagcgagcgcgacgacgccgacgccgacgaggccgAGGACAAGTCCGTCAAGCAcgagaacgacgacgagcggtGGGACTACTAA
Protein Sequence
YFSSSGKESAGGMPPFGARPDADLTDERLAHILSEAQHMQMKGGGGGQEPDALSNDDSKSPHGQCRSPFSRDSSQNRRLKKYENDDIPQEKVYKIYQEELAKIMGKDMRGAGAFQGLFLPQLFSGNPLDRTQDEIRMTLEAYHREMLKLNQGQGLSNLGILALQQQAQALAQQGPLNGGVQDLSIPKEAKSKCADEKEKPDDDKHGAGSAFSLVRPKPEPTTPLPSSTASSPLGNTILPPATAEEFCASSVASPLQRMASITNSLISQPAAQPHHNASQRPLKAVLPPITQQQFDLYNNLNTEEIVKKVKEQLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGGYGGACATVSKPMPPKMLCEAAGLFNKMQQEQQNLLPPSLQLQHPNPQPPPPPMLLTPPGVPPHHAINLQNSAAAAAEHMKKNQSPHVQHSPVGPAQSAMRSLHQHISPSVYEMAALTQDLDTQIITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLNDAHNVDRLQALKNERREANKRRRSSGPGAHDNSSDTSSNDTSEFYHSNSPGPGPGMPSAKKQRVLFSEEQKEALRLAFVMDPYPNVTTIEFLAQELNLSSRTITNWFHNHRMRLKQQVPHGLANDLPPRDQAGGQPPFDPMQFRLLLNQRLIELSKERMGLGGVGLPYPPYLATNPNLAALIGRGILPTGDELAALNNAVKEQISGLDLSMGALKREPGDFDDEDELESNAGSDDSNVSGASMRGEPKPEPKETPVQARSSRRKPAAPQWVNPEWQDEKEKPAAGDEVIINGVCVMQTEDYGRRGAEETVRVEPTPVMDRYDDDQSDASSMRSQRDQAEVKSERDDADADEAEDKSVKHENDDERWDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00369361;
90% Identity
iTF_00632020;
80% Identity
iTF_00632020;