Basic Information

Gene Symbol
fap1
Assembly
GCA_027574945.2
Location
JAODGD020018757.1:5923-7629[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 6 2.5e+04 -4.6 1.2 15 18 103 106 103 107 0.51
2 18 2.7 1.2e+04 -3.0 3.8 12 19 117 125 117 125 0.81
3 18 1.5e-06 0.0063 17.0 16.6 4 19 135 150 133 150 0.94
4 18 0.92 3.9e+03 -1.5 0.6 1 4 159 162 159 163 0.89
5 18 4e-07 0.0017 18.8 17.0 1 19 187 205 187 205 0.97
6 18 1.5 6.2e+03 -2.2 1.3 5 10 231 236 231 236 0.93
7 18 5e-08 0.00021 21.7 10.3 1 18 242 259 242 260 0.97
8 18 0.035 1.5e+02 3.0 6.8 1 19 300 318 300 318 0.90
9 18 1.4 5.7e+03 -2.0 1.4 5 10 367 372 367 372 0.94
10 18 0.19 7.8e+02 0.7 5.6 1 11 378 388 378 390 0.87
11 18 0.14 5.8e+02 1.1 1.6 1 10 388 399 388 399 0.85
12 18 1.4e-08 5.7e-05 23.5 13.7 1 18 405 422 405 423 0.97
13 18 1 4.3e+03 -1.6 0.9 5 10 451 456 451 456 0.87
14 18 6 2.5e+04 -8.9 14.0 1 18 462 479 462 480 0.89
15 18 1.5 6.4e+03 -2.2 0.8 1 5 487 491 487 491 0.89
16 18 3.8 1.6e+04 -3.5 0.2 9 11 499 501 499 504 0.74
17 18 3.8 1.6e+04 -3.5 0.4 6 10 507 511 506 511 0.75
18 18 0.1 4.3e+02 1.5 13.8 5 18 521 535 518 536 0.82

Sequence Information

Coding Sequence
ATGGCTCTTGGCGGGCACTCTGACTTGGTCAGTCAACTGACAGCGGAGCTCACCAACGGGGAGCGGGAGTGTGCGGTGTGCACGGAGGTCATTGGCCGCCAGGAGCAGCTTTGGTCTTGCTCCTCCTGTTATGGCGTCATGCACCTGCGCTGCATTGCCTTCTGGGCGGCGGCACAAGTCGAGGAGCGCGAGCGACACCTGCGCAGCACCTCCGGAGCGGAGGAGGCTTCCATGCTTGGCATGTTTCGCTGCCCACTGTGCCAGTCACCGAACAAGGTCAGCACCACTGCCACCTACCTGTGCTTCTGCGGTAAGTGCAGGGACCCGCGCCCGGACGGGATGCTGGTGCCTGGGAGCTGTGGAGAGCCCTGTCAGAGGCGCCAGCATGACCCCAACTGCCCACACAAGTGCACGTTGCTCTGCCACCCCGGCCCCTGCCCGCCGTGCAGTCGCACCCGGGAGCAGACCTGCTACTGCGGAAAGCACTCCAAAGTTGTGGGGTGCTCGAGCCAGGTGTACGGGTTCGAGTGCGGTGAGACCTGCAGGAGGCTGCAGGACTGTGGCCACCACACCTGCCCCGCGCCGTGCCACTACGGCCCCTGCCCTCTCTGCACGGTCATGGTGAGGGATGAGCCGTGCTACTGCGGGGCCACGACCCGCACGCGGCGCTGCGCCACCGCGCCGGGTTTCCGCTGCACGCAGCTATGCTCGAAGCGCCGCGACTGTGGTGTTCACGCGTGCGGGGTGTTGTGCCATGAGGGGGCCTGCGAGCCGTGTCTCCGCCTCCCTGCTCGGGCGAAGTTCTGCCCCTGCGGGAAGACGATGGTGCGTGCGGGCCGTCAGTCCTGCGAGGACCCGATACCAAGCTGCGGGCTGGCATGTGAGATGCCGCTTCCCTGCGGCCACATGTGCTGGTACACATGCCACGACGCTACCCCCTGTGCAGCGTGCCGGGAACTGGTGAAGACGCAGTGTGAGTGCGGTGAGAGGGAGGTGAACTTCCCCTGCTTTTGCCAGTACCTACCAGTGGAGGAGTGGGCGGAGGCTGCACAAAAGGCTTCGATACAACCGGAGGCACTGCCCTCCGGCTTCCCGGTGAAGTGCACGCGTGTGTGTCGCAAGCAGCTCTCGTGCCACAAGCACAAGTGTGGTGCTGTGTGCTGCGGGGACACCGAGCACACTTGCTTCGCCATATGCATGAAGAAGCTCTCATGTGGCCAGCACCAGTGTGGGCAGCTGTGTCACAAGGGGGCCTGCGCACCATGCTTGAATGTGTCTTACGAGCGCCTGTACTGCCGCTGTCGACGCACGTGGCTGGAGCCACCCATCGCGTGTGGCACGAAACTACCCAGGTGCGATCAACCGTGTGTTGTGCCGCGGCCCTGCGGACACGCACCAAACCATCCATGCCACGGCGACCCAGAGTGCCCCCAGTGTGTCATTCCGGTGGAGAAGCTTTGTGGCTCACACAACATGCCGATGCCATATCACATGCCGTGCCACCTGAAGGGCGTGTCCTGCGGGCGGGTTTGCGGGAAGGCTCTGACGTGCTGCGGGAAAAGGTGTGAGCTGACCTGTCATGGCGGAGAGTGTAAGCACAACTGCGGCAAGAAGTTCCCCACACTCGCAGATGTGCTGAGGTCCAAGCAGTCTTCTACACAGTCCACCGTACCTTCCGTCCTCCACGAAACGAAAAGAGTGACATGA
Protein Sequence
MALGGHSDLVSQLTAELTNGERECAVCTEVIGRQEQLWSCSSCYGVMHLRCIAFWAAAQVEERERHLRSTSGAEEASMLGMFRCPLCQSPNKVSTTATYLCFCGKCRDPRPDGMLVPGSCGEPCQRRQHDPNCPHKCTLLCHPGPCPPCSRTREQTCYCGKHSKVVGCSSQVYGFECGETCRRLQDCGHHTCPAPCHYGPCPLCTVMVRDEPCYCGATTRTRRCATAPGFRCTQLCSKRRDCGVHACGVLCHEGACEPCLRLPARAKFCPCGKTMVRAGRQSCEDPIPSCGLACEMPLPCGHMCWYTCHDATPCAACRELVKTQCECGEREVNFPCFCQYLPVEEWAEAAQKASIQPEALPSGFPVKCTRVCRKQLSCHKHKCGAVCCGDTEHTCFAICMKKLSCGQHQCGQLCHKGACAPCLNVSYERLYCRCRRTWLEPPIACGTKLPRCDQPCVVPRPCGHAPNHPCHGDPECPQCVIPVEKLCGSHNMPMPYHMPCHLKGVSCGRVCGKALTCCGKRCELTCHGGECKHNCGKKFPTLADVLRSKQSSTQSTVPSVLHETKRVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00632441;
90% Identity
iTF_00632441;
80% Identity
iTF_00632441;