Eara015557.1
Basic Information
- Insect
- Ecitomorpha arachnoides
- Gene Symbol
- -
- Assembly
- GCA_027574945.2
- Location
- JAODGD020028104.1:2492-5758[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.098 15 6.8 0.0 2 23 93 115 92 115 0.91 2 11 0.0064 0.99 10.5 4.6 2 23 207 229 207 229 0.91 3 11 3.8 5.9e+02 1.8 7.6 3 23 407 428 406 428 0.95 4 11 0.014 2.1 9.4 0.2 2 22 478 498 477 500 0.87 5 11 1.5e-05 0.0023 18.7 1.1 2 23 564 586 563 586 0.97 6 11 0.0012 0.19 12.7 0.2 2 23 617 639 616 639 0.91 7 11 0.005 0.77 10.8 3.6 2 23 695 717 694 717 0.96 8 11 0.073 11 7.2 3.7 3 23 732 753 730 753 0.92 9 11 0.00016 0.025 15.5 0.4 2 23 806 828 806 828 0.95 10 11 0.46 70 4.7 1.1 1 23 900 922 900 922 0.97 11 11 0.00052 0.081 13.9 0.1 1 22 938 959 938 961 0.90
Sequence Information
- Coding Sequence
- ATGATGACGTCGGTCACGTTGCCCTCCGGCTCAGGTGCGAACATCCACGGCGGCTTCAGCGCCGGCGTGCCGAACGACACGACGGCCGCCGCCGATGCGGGCGACTTCGAATCGCCGCGCCCGCCCAAGCGTTGCCTCTCCACGCCGCCCGTCGACGCGTGCAAGAAGCGCCGCAAGCAGGCGACGCCCGTGCGCATCTCCGCCGCCGACTCGCCGCCGAGCGTCGAAGGTAAGCCCGATCGCGAGTCGCCGCCCGCCGGCGCGGAGACGGCGCTCCAGTGCCCCGTCTGCCAGCTGCCCCTCGCCGCCGCCGACCAGCTGCAGGCGCACCTCGCCGCCGAGCACGTGTGCAAGCGGGAGCCGGCGTTCTCGCCGCCCCCCGAGACGGAGGCGTCCGACAGCGACTCGCAGCCCGGCGGGCAACTCGGTGGCGGCGTCGACTTGAAGCAGGAGCTGCCGCCATGGCTGCCCGACCTGCCCGGGAAGGAGTGGATGAATCCCGGACTGCTTCGGTTTCCCGCGGCGGCCAACTCGCTGTTCATGGGCCTGCCGCCCTTCGCGGCGCAGCCGGACGCGATGCCGCCTCGCCAACCCATCAGGATCTTCAATCCGGACGCGTACTGCGAGCTGTGCAACAAGGAGTTCTGCAACAAGTACTTCCTCAAAACGCATAAAGCCAACAAGCACGGGATCTACAGCGACCCACCGCCCGAGTCTAACCCTCCCAGCAGTGCCGGCAGTTCGGCGCCTTCCGTCAACATCCCATCCTATGTGAATCACATGAAGATACCTCCCATCGCTGCGACTAACATTGACCTGGCCGTGAAAATGGAGAAAACCTACGACATGTTCAGCGGCCCGTTTGGCAAGATGTTCGAGAAGCCGAAACAATTTGAAAGCCCCAATCAGTCGGAGCTTCTGACATCAGACAGCGGCGTGTTACCAAACGCGGACGGCGAACGACAACTGGACGAGTCGTCGAGTCCGCGCATCATCCACAACGAAGCTACCTCAAACACCTCGCTGAAGAGCGAATACGATCGCGAACGCACCTCCGAACTGGAACCGTTTTATACCTCGCCTGTTAAGCTATCGCCTGGCCAACAACAACAACAACAACCACAATCGTCCGCCACGCAACTACAAGTCCCGCGCGAGTCTTATCAGGACTTCTCGGCCCGACTGCGACGCATCGGCGTGATGAATCCGAAAGCGTTCTGCGAGATCTGCTGCAAGGAGTACTGCAACAAGTACTTTCTGCGCACGCACAAGATGAAGCGCCACGGCATTTTCATCCCCGACGACCGCGAAGCAAAGAACGACAAATCTGAGACCAACCAGCCGCACACTCAGACGAGCCCGCTGAACCTCATAATGGGCGAACAAAGCACCAACAGTTCGGACCGAAAGACCTCGTCCCCGTCGGACGTCAGCTGCGAGACGTGCGGCATCAAGTTCCAGAACGCCAGCTTGTTCCAACTGCACAACGTGAGCGTGCACTCGAAGTTACCTGACCCGCCGCAACTCTTCCCGAACACCAACGCTGACAAGAAATCCTCCGAAGAGAAGCCTTCCATCTCGGCCGCTTCCTCGTCGGCCGACAGCATTTCGGAAGACCTGCAGAAACTGCAGACGATGATTCTGCAACTCAACGATCTCGACGTGTCCAAAGTCGCCGCCACCTGCAGCACCTGCGCCACCTGTGGCAAGGACTTCGAGAACCGCTACTACCTGCACGCGCACATGATGACCGAGCACGGGCTGCTCCTCGACGACCCCGCCGAGACCGAGAAGACGCCGGAGGCCGACGCCAATTCCAACCACAACGCCAACGTGAACAACAACACCATGTGCGACCTGTGCGGCAAGGACTTTCCGAATTTCGAAGACATGAAAAAGCATCTCTACGAAGCCCACAAGACCTCAAGCCAACCGTCGCTCGTCGAGGTGAAGGAAGAATACAACGGATTTGCGACTCCGGAGAAAACGCCTCGCTCCGGACTGAGCACGCCGAGCGGGCAACCACCTGCGGCCGGGGGTCCGGAACGGCGCAGCTCGATGAATCTCACGCCGACCAGCAGCTATTGCGAGATTTGCAACAAGGAGCTGTGCAACAAGTACTTCATGAAGACCCACATGCAGCGCATGCACGGCATCGAGATCGAAAACGGCGCCCAGATCGGCGGCGTCATTTGCGACATATGCAACAAGGAGCTGTGCAGCAAGTACTTCCTGCGCGTGCACAAGCACAACACGCACGGCATCGTCGAGTACGGCTCCAACTTGATGCAGCCGAAGAAGTTCGACGACATGACTGCCACGCCGCCAGCGCCGCCGACCAACGCGGAGGACCCGTCGTTGAAGCCCGCCGATCTGGCCGACCTGAGCCACCGCTACTTTTCGCACTTCAACGAAGTGTGCCCGCTGTGCAGCAGAAGGTTCAGAAGCACGAAATGGCTGAAGGCGCACCTGCTCAGCGATCACGGCCAAGCGGGTGCCGAGAAGTGGACCGAGCTGGAGCAACAACTGCAGCAGACCGTGAGCCAACCGAAGCGCGAGCGCGTCAGTCCCACCATCAAGGTGCCGAACAACCAGACGCCGACCGCCGCCGACGTTGCGCTGCAACAACAGCAGCAGGCGAAGATGCAGAACGTGCTGTCGTCGATCTTCGGCGCGGACGCCGAGGCGGGCAAGACGTATCACTGCTCGTTCTGCCCGTTCGCCACGTCGGTGCTGCCGTTCCTCTTCGTGCACGAGCGCTCGCACGCCCAGCACGCCGAGCATCCCGCCGGCAACGCGGAGCCGGCGGTCTTCAAGTGCCCCATCTGCATGCAGCCGTTCGCGCAGCCGGACCAACTGCAGCAGCACGTCTTCGCGCAGCATCCGTTCCTGCCGCTGCCGCCGTTCTTCAACGGCTTCAACGGCAGCGGCGACGCCTCCAGGGAGCCGTCCGAAAGCGCCGACGACGTCGACGACGCGGACGGCAAGACCACGCCGAAGGCAAGTAAGAAAGTAGTCGTTAAGCGCAAGCCGAGCGAGCAGTCGATCGGGGAGCTGAAGGAGGTCGCGCAGAAGGCTCAGCTGCCGGCGACGTACGCGCTGCCGCAGAGCGAGGAGGACGGCGCCGCCGCCGGCCAGTACGTCATGCAGCCCTTCCTGCTCGAGGAAACCGCCAACGTGCTCGCCGCGCCCTCGATCGTCTACCTTCCGGTGGCGAGCAAGCTGTCGTCGCCCGTCACGGCGACGTTCACGCTCACGCCGGCCTAA
- Protein Sequence
- MMTSVTLPSGSGANIHGGFSAGVPNDTTAAADAGDFESPRPPKRCLSTPPVDACKKRRKQATPVRISAADSPPSVEGKPDRESPPAGAETALQCPVCQLPLAAADQLQAHLAAEHVCKREPAFSPPPETEASDSDSQPGGQLGGGVDLKQELPPWLPDLPGKEWMNPGLLRFPAAANSLFMGLPPFAAQPDAMPPRQPIRIFNPDAYCELCNKEFCNKYFLKTHKANKHGIYSDPPPESNPPSSAGSSAPSVNIPSYVNHMKIPPIAATNIDLAVKMEKTYDMFSGPFGKMFEKPKQFESPNQSELLTSDSGVLPNADGERQLDESSSPRIIHNEATSNTSLKSEYDRERTSELEPFYTSPVKLSPGQQQQQQPQSSATQLQVPRESYQDFSARLRRIGVMNPKAFCEICCKEYCNKYFLRTHKMKRHGIFIPDDREAKNDKSETNQPHTQTSPLNLIMGEQSTNSSDRKTSSPSDVSCETCGIKFQNASLFQLHNVSVHSKLPDPPQLFPNTNADKKSSEEKPSISAASSSADSISEDLQKLQTMILQLNDLDVSKVAATCSTCATCGKDFENRYYLHAHMMTEHGLLLDDPAETEKTPEADANSNHNANVNNNTMCDLCGKDFPNFEDMKKHLYEAHKTSSQPSLVEVKEEYNGFATPEKTPRSGLSTPSGQPPAAGGPERRSSMNLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICDICNKELCSKYFLRVHKHNTHGIVEYGSNLMQPKKFDDMTATPPAPPTNAEDPSLKPADLADLSHRYFSHFNEVCPLCSRRFRSTKWLKAHLLSDHGQAGAEKWTELEQQLQQTVSQPKRERVSPTIKVPNNQTPTAADVALQQQQQAKMQNVLSSIFGADAEAGKTYHCSFCPFATSVLPFLFVHERSHAQHAEHPAGNAEPAVFKCPICMQPFAQPDQLQQHVFAQHPFLPLPPFFNGFNGSGDASREPSESADDVDDADGKTTPKASKKVVVKRKPSEQSIGELKEVAQKAQLPATYALPQSEEDGAAAGQYVMQPFLLEETANVLAAPSIVYLPVASKLSSPVTATFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00632337;
- 90% Identity
- -
- 80% Identity
- -