Eara003733.1
Basic Information
- Insect
- Ecitomorpha arachnoides
- Gene Symbol
- -
- Assembly
- GCA_027574945.2
- Location
- JAODGD020006320.1:10727-12088[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1e-06 0.00015 22.5 0.5 1 23 193 215 193 215 0.95 2 9 2e-07 3e-05 24.7 0.6 1 21 229 249 229 250 0.96 3 9 0.00024 0.036 15.0 6.1 1 23 257 280 257 280 0.96 4 9 4.1e-05 0.0064 17.4 0.1 3 23 288 308 286 308 0.97 5 9 5.4e-05 0.0082 17.0 3.1 1 23 314 336 314 336 0.97 6 9 2.8e-05 0.0042 17.9 0.4 1 23 342 364 342 364 0.97 7 9 0.00037 0.057 14.4 2.8 1 21 370 390 370 392 0.94 8 9 0.0099 1.5 9.9 0.2 2 23 400 420 399 420 0.96 9 9 3.8e-06 0.00058 20.7 4.5 1 23 426 449 426 449 0.97
Sequence Information
- Coding Sequence
- ATGGATTGCTTCCAAGACGTATTTCCATCTGCCGACATTTGCGCGGATTTAAACTTTGATCCAGTCGGCGTCGTAAGCGAACGCCTTGATCGAATCGACGGGGTGAGCGACGATAGTGACATCATTGTCGAAGATTTAGACGACGAAGATTATGCGGAAGAACAGTCGGACGACTTGGAATCGCGTAAATTCAATTGTATTCTGTGTAACGTGTCTTATTCTCCCGTAGGGAGTCagttttattttctaacTGCCGAGAATCCGCTTACGATGTCGACACAGAAGTCCGTTTCGGAGAAACTGAAAGGCATTGTTGGTGATTTTAATGATAGCTATCTTTGTTGTCAGTGTCTGGGTCTTATAAATTCGATAGACCATCTGGAGATGAAGTTGGAGGGTTTGAAAcaagatttaattaagAAATACGAACACAGCAACGGCGTAATTATCGGAAATGACAAGAAAACCAAATTAAAACGCTGTTACCACAGAGTTACATGTAAGATATGCAAGCGCAGCATGAACTTAGTGAATATTTTTCGCAATCACGTCAAGAAGCATAAATTATCCAAGCGATTTTTGTGTGAAGTGTGCGGAAAGAGATTCATTAACGCTAAAAACTTTCAAGTTCACATTAAAAATCATACTTTGAAATCTACCAAGCACAGTAAAGTTATCAAAGGTTATCCTTGCACGATTTGTAAGAAAGTCTTTAGGACCACGTCGAATTTAAAGGAGCACATGAATTATTGCTCCGGAAAATTGCCCTTCAAGTGCACGAAATGTCATAAGAAGTTTCCCTCGACCACCAAGCTTAAAAATCATGTCAAACTCAAACACGAAAAGAAGTTCACGTCGATCTGTTCGATTTGTAACATTGGTTTCGTACAAATTAGCGATTATAAGCGCCACATGATCTCGCACAGTACGCTCAAGAAGTTTAACTGCAACCAGTGCGAAAAATCGTATAAGACTTTAAGCAATTTGAAGTTTCACATGAAGCTGCACGCCAAGAAGCTGCCCTTCATTTGCGAGATTTGCTCCAAGGGATTCATGCGCAAGGAGTATTTGGAATCGCACCGAGCGTCGCACACGGGCGAGAAGAACTTCGCGTGCACGCAGTGCGAGAAGAAGTTCGTGTCGCAGAAGAATCTGGATGCGCACTTGAAGTGCCACAACGGCAACATCAACAAAAAGTCGTGCAACATTTGTGGCAAGTTGATATCGAAGATCGCGCTCGAGGACCACCTAAGGACGCACAGCAATCTCAAGGAGTTCAAGTGCGAGAAGTGCGAGGAACGCTTTAACACGAAGAGTTCCTTGCAGAAGCACAAGAAGCGAAAGCACGAGGATAAAAGTTGA
- Protein Sequence
- MDCFQDVFPSADICADLNFDPVGVVSERLDRIDGVSDDSDIIVEDLDDEDYAEEQSDDLESRKFNCILCNVSYSPVGSQFYFLTAENPLTMSTQKSVSEKLKGIVGDFNDSYLCCQCLGLINSIDHLEMKLEGLKQDLIKKYEHSNGVIIGNDKKTKLKRCYHRVTCKICKRSMNLVNIFRNHVKKHKLSKRFLCEVCGKRFINAKNFQVHIKNHTLKSTKHSKVIKGYPCTICKKVFRTTSNLKEHMNYCSGKLPFKCTKCHKKFPSTTKLKNHVKLKHEKKFTSICSICNIGFVQISDYKRHMISHSTLKKFNCNQCEKSYKTLSNLKFHMKLHAKKLPFICEICSKGFMRKEYLESHRASHTGEKNFACTQCEKKFVSQKNLDAHLKCHNGNINKKSCNICGKLISKIALEDHLRTHSNLKEFKCEKCEERFNTKSSLQKHKKRKHEDKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -