Eara025028.3
Basic Information
- Insect
- Ecitomorpha arachnoides
- Gene Symbol
- salm
- Assembly
- GCA_027574945.2
- Location
- JAODGD020044525.1:9694731-9700287[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2 3.2e+02 2.6 0.1 2 19 41 58 40 60 0.88 2 11 3.1e-06 0.00047 20.9 0.9 1 23 361 383 361 383 0.98 3 11 6.1e-06 0.00094 20.0 2.1 1 23 389 411 389 411 0.98 4 11 0.038 5.9 8.0 3.8 2 23 737 758 736 758 0.98 5 11 3.7e-08 5.7e-06 27.0 0.6 1 23 764 786 764 786 0.97 6 11 3.7e-05 0.0057 17.5 2.6 1 23 796 818 796 818 0.98 7 11 0.047 7.3 7.8 4.5 2 23 1076 1097 1075 1097 0.97 8 11 0.025 3.8 8.6 0.7 1 14 1103 1116 1103 1117 0.92 9 11 8.4 1.3e+03 0.7 0.2 14 23 1179 1188 1176 1188 0.89 10 11 8.5e-07 0.00013 22.7 4.0 3 23 1303 1323 1301 1323 0.96 11 11 1.2e-07 1.9e-05 25.3 0.9 1 23 1329 1351 1329 1351 0.98
Sequence Information
- Coding Sequence
- ATGGTGAGAGTAAAGCGCGCTCCGTTTGTTCTTCCAGGAGAAGCCGCCGCCCAGCCCGCGGACGAAGCGGCCTCGCCACGTCTGACGCCGGAGGAAGAGCTGCAGTACAGCGGGGCGTTGATGTGCCCGCGCTGTCAGGAGCAGTTCACCGAGGTGAACGAGTTTCTCACGCACAAGGACGAGTGCGCGGAGAAGGCGAAGAAGCACGAGGAGCCCGCGCACTCGGACCCGGAGGACATGGTGGTGTCCGAGGACGACGACGACGAGGACGAGGGCAACGCCGGCAAGCGCTCGGAACGAATGCGACGGCATCGGCAGGACGCCGCCAACAACAACAGCGTGGAGGAAGGGCCGCAGGAGGAGGCGGAGACGGAGCCGCGCGTCGGCTTCCCCTTCCCGGTGCCGGCGCCCGGCGGCCACGTCACGCTGGAGGCACTGCAGAACACCAAAGTCGCCGTCGCCCAGTTCGCCGCCACCGCGATGGCTAATCAGGAGAACAACGAGGCGGCGCTCCAGGAGCTGGCCGTGCTGCAGAGCACGCTCTTCACCCTGCAACATCAGCAGGTGCTTCAACTGCAGCTGATCAATCAACTGCAGCAGCAGTTGTCCATCAACAAGCCGGGAAGTCCGGCGTCGACGACGCTCGAGAACGACGATCATCCCGTACCGGACTCGCCGCCTCCGAGACGCCCGACGCCCTCCCTGCTGCCTCCCAGGGTGGCGACGCCGGGGAATGTGCCCTTGCCGCCGCCTCCGGTCAGTCAGCCGTTGAACACGACGCAGCCGACGGAGCACAGGCCGCAGGTCTCGACGCCGATCACGATGCCCCCGAATATTCAGCCGCCCTTATGCTCCATATCATCGTCGCTGGCTTCTACGATCATCACGCATTCCAGCGACCCGCCCTCCTTGGACGAGCCCAACACTCTGGAGATGCTCCAGAAGCGCGCCCAGGAAGTGCTGGACAACGCCAGTCAAGGCCTCCTCGCTACTAACCTTGCCGACGAGCTGGCGTTCCGCAAAAGCAAAGGATCGATGTCTCCCTACGATTCCAAGGGACGCAACGAACCGTTCTTCAAGCACAGGTGTCGATACTGTGGCAAGGTGTTCGGCTCTGACTCTGCGCTGCAGATACATATCCGCTCGCACACTGGCGAACGCCCTTTCAAATGCAACGTCTGCGGAAGTCGTTTCACCACGAAGGGCAACCTCAAGGTGCATTTTCAGCGACACAGTGCTAAATTCCCGCATATCAAAATGAACCCGAACCCGGTGCCGGAACACTTGGACAAGTATCATCCGCCGCTGTTGGCCCAGCTCGGACAGCAGCCGTCGTTGTCGCCAGGCGGTCCACCGCATCCATCGCACATGGGCTTTCCGACAGGACCCGGCGCGCATCCGTTTCCGCCATCGTCTTTGCCCCTGTACCGACCTCCGCATGGCCCACCTCCGCCCGTCGAGCTGCTGAACAATCGCCTGCCGCCGTCGCCGATTAGGTTGCAGGACCCACCGCCGAGGATATTCCCGCCGCATCCATTCCTTTTAAAGAGGGAGGAGCAGGACGTGCCCGAGAACCTGAGCAAACCTCTCAGGTCGCCCACGCCCACGGAGCGCAGCGAGTCGCGCGTGAAGATTGAGAAGTCGGACAACGAAGATGAGCGAGAACCAAAAACAAGCACCGAGAGCGACGAGGCTAAGATGAACGAACCTGAGATCACTCCGAAGAGAGAAATCGATACTGATAACGAGACGGAGCAGGAACAAGAACGTTTTCCTTCGCCTGCGCCTTACGACGAGTGTAGTCTTGACAGCAAGTACAGCAATGAGGAGGCGATGGATCAAGCCGCCAGTCCGTCGGCTGAGGCATCCGAAAACATGCAAGACGAGCCCGAGAACTTGTCCAGCAAGAGTAACTCCATAACGCTGCCATTGAGCATTTCCACCGGGCAAAGAATGCCCGCCAACTTCCCCTACGGCCAGACGGTCTCGTCGCCTCCGAGCAGCACCTCCTCGGGAAGCCTGGGGCACTTCCCCACAACTCCGGTCGGTGACCCTGCCAAAGATCCCGCCATTTACGCCAACCTTCTGCCGCGTCCAGGCAGCAACGACAACTCCTGGGAGTCGCTCATCGAAGTGACCAAGACCTCCGAAACGAGCAAATTGCAACAGCTGGTCGATAACATCGAGCACAAGCTCTCGGATCCCAACCAGTGCGTTATCTGCCATCGGGTATTGTCCTGCAAGAGTGCGCTCCAGATGCATTACAGAACGCACACCGGAGAAAGGCCATTCCGGTGCAAAATTTGCGGAAGGGCTTTCACCACGAAGGGCAACCTCAAGACGCACATGGGTGTGCATCGTGCAAAGCCCCCAATGAGAGTGCTACACCAGTGCCCGGTTTGTCACAAGAAGTTCACCAACGCGTTGGTGCTGCAGCAGCACATTCGTCTGCACACCGGCGAGCCCACCGATCTCACCCCCGAGCAGATACAGGCGGCCGAAGTGAAGGACTTTCCGTCGCCCGGCGGTTTCCCGCCGCTGCCCAATTCCATGCATCCATTCCTCAGTCAGGGTTTTCAAGTGCCCGGACTCTCGCCGCTCGGCGCCGGCGCATTCCCCGTCGGCATGCGCATGGAGAACGACAAGGACTACAGCAACGAGTACATGGACGAAGACGAAGACGAGGACGACGACATGATGAGCAACTCCGAGCACAACCTCTCGTTCTCGCATTCGCCCAGCGATCAGAATCAGTCCGGTGGCAACATGGGCTCTCTGAGCTTCTCCAACGAAGACCTGCGCCGGCGCTCGGCATCCCCCATGCAGAACGGCGAGAAGTCCCCGGCCAGATCCGGGGTGACCTCGCCGGGCAGCTGCAACGAGCAGAGGTGCTCGTCGCCGCTCCCGCCCACCGTCCAAGTGCCGCGTCCGCCCTCCTCGCAACAGCCGGGCAGCCCCGCGCCGTCCGACTCCAACTCGCTGGGCGCCCTCGATCTAACGCCCCGGCATCAGCAGCAGCCCTCGTCGGCGACCACCAGCCCCGGCCCCGGCGGCATCGCGCCGCCTCCGTCGCTCTTCTCGTCGTTCGGCTTCCTGCCGCCCGGCCAGGCCAGTTCGCCACTGATCTCGTCGGCGTTGTCCTCGCTGACCTCCTCGGTGCTCACCTCCACGGCGTTCAGTCCGCTGCGACTCGCAGTCGGCCCGACCGCTGGCCGCGGCAACACCACGTGCAACCTGTGCTTCAAGACGTTCGCCTGTCACTCGGCGCTCGAGATTCATTACCGGAGCCACACCAAGGAGCGTCCGTTCAAGTGCACCGTCTGCGACCGCGGATTCTCCACCAAGGCGGATGCCGACGAGTGCGCGTGTGGCGGTCAGAGGCGTATCCAGGATGAAGCGGAGCCGGCCGTCGGCGCCAAGAGGGGCGGCAAGCGCAAAGCGCCCTCGAAGCTTCGTCGCGGCAGTAGCGCCTCGAAGTTTCGCCTGCCGATGAGCCCTGGATACGCCACTGCGCTGCACTGGAGCTCGCTAGCGGGCAACATGAAGCAGCACATGCTCACGCACAAGATCCGCGACATGCCCCAGCACATGTTCGACAAGCCGGGCAGCAACAGCGCCGACGACTCGCAGTCGCAGCCGCAGTCGTCGCCGCTGCAGCAGGCGCAACAACAGCAGCCGGCCGCCGCGCCGCCCCCGCCGCAGCAACCGCAGCGCGACTCGACGCCGCGCGAGATGCCGCCCCAGGCGGCCGAGGGCGAGCACGCCGCGTCGCTGGCGGCCTCGCAGCCGCAGCCCGAGCAACAGGTGAAGGAGCCGCCGCCGCCGCCCCCGCCCAAGCGCGCGCCCTCCGAGACGGACCTGCCGCTGCCCAAGCGAACGCCGAGCTTGCAGGCCAATAAGCATTTGTGCCACGTGTGTAATAAGAACTTCTCGTCCAGTTCGGCCTTGCAGATACACATGCGTACACATACTGGGGACAAGCCGTTTCGCTGCACCGTCTGTCAGAAGGCCTTCACCACCAAGGGGAATCTGAAGGTACACATGGGCACGCATATGTGGAGCAACGGGGCGTCGCGACGCGGCCGTCGCATGTCCCTAGACCTGCCGCCCATTCCCATGACCCCCAAGGATTCCGAATTTCTCCAGCGGAGGCCCGACCTCTTCTACCCGTACCTCCCGGCACCATTCCTTAACGGCATGCAACAAAAGTTGAACGACATCGCGGTGGGCCAAACGCCGCAGAACGGCCTGTCGAGCGCGGGGAAGTACAGCGGCCTGCTGGGCTTCGGGTACCCGCCGCCCGACGCGCTGCGCTCCGCCGCGGGCACCCCGGAACGTCCCCCGTCGCGGCCGGCGAGCCGCGAACCCGAACGCCTCTGGGACATCCACTTCGACCGAAAGCCCTCGGCCGAGAGCGGCCGCGAAGAGCTGATGCCCCCCAACCGCGAGGGCCTCGCCGCTTAA
- Protein Sequence
- MVRVKRAPFVLPGEAAAQPADEAASPRLTPEEELQYSGALMCPRCQEQFTEVNEFLTHKDECAEKAKKHEEPAHSDPEDMVVSEDDDDEDEGNAGKRSERMRRHRQDAANNNSVEEGPQEEAETEPRVGFPFPVPAPGGHVTLEALQNTKVAVAQFAATAMANQENNEAALQELAVLQSTLFTLQHQQVLQLQLINQLQQQLSINKPGSPASTTLENDDHPVPDSPPPRRPTPSLLPPRVATPGNVPLPPPPVSQPLNTTQPTEHRPQVSTPITMPPNIQPPLCSISSSLASTIITHSSDPPSLDEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKSKGSMSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQPSLSPGGPPHPSHMGFPTGPGAHPFPPSSLPLYRPPHGPPPPVELLNNRLPPSPIRLQDPPPRIFPPHPFLLKREEQDVPENLSKPLRSPTPTERSESRVKIEKSDNEDEREPKTSTESDEAKMNEPEITPKREIDTDNETEQEQERFPSPAPYDECSLDSKYSNEEAMDQAASPSAEASENMQDEPENLSSKSNSITLPLSISTGQRMPANFPYGQTVSSPPSSTSSGSLGHFPTTPVGDPAKDPAIYANLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGGFPPLPNSMHPFLSQGFQVPGLSPLGAGAFPVGMRMENDKDYSNEYMDEDEDEDDDMMSNSEHNLSFSHSPSDQNQSGGNMGSLSFSNEDLRRRSASPMQNGEKSPARSGVTSPGSCNEQRCSSPLPPTVQVPRPPSSQQPGSPAPSDSNSLGALDLTPRHQQQPSSATTSPGPGGIAPPPSLFSSFGFLPPGQASSPLISSALSSLTSSVLTSTAFSPLRLAVGPTAGRGNTTCNLCFKTFACHSALEIHYRSHTKERPFKCTVCDRGFSTKADADECACGGQRRIQDEAEPAVGAKRGGKRKAPSKLRRGSSASKFRLPMSPGYATALHWSSLAGNMKQHMLTHKIRDMPQHMFDKPGSNSADDSQSQPQSSPLQQAQQQQPAAAPPPPQQPQRDSTPREMPPQAAEGEHAASLAASQPQPEQQVKEPPPPPPPKRAPSETDLPLPKRTPSLQANKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNDIAVGQTPQNGLSSAGKYSGLLGFGYPPPDALRSAAGTPERPPSRPASREPERLWDIHFDRKPSAESGREELMPPNREGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00629986;
- 90% Identity
- iTF_00632264;
- 80% Identity
- -