Etor014915.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- lolal
- Assembly
- GCA_949318235.1
- Location
- OX439132.1:45946147-45977384[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2 82 4.3 4.8 1 23 788 811 788 811 0.95 2 11 3.1e-05 0.0022 18.7 2.7 1 23 823 846 823 846 0.97 3 11 0.0012 0.084 13.7 1.1 1 23 852 875 852 875 0.97 4 11 6.7e-05 0.0047 17.6 0.2 1 23 882 905 882 905 0.96 5 11 0.00046 0.032 15.0 4.5 1 23 943 966 943 966 0.98 6 11 1.9 1.4e+02 3.6 4.2 1 23 993 1016 993 1016 0.95 7 11 0.084 5.9 7.9 1.2 1 17 1028 1044 1028 1045 0.93 8 11 6.1 4.3e+02 2.0 0.9 2 21 1089 1108 1088 1111 0.76 9 11 0.25 18 6.4 4.2 1 23 1145 1168 1145 1168 0.96 10 11 0.13 9 7.3 0.5 1 17 1180 1196 1180 1197 0.92 11 11 1.1 81 4.3 1.3 2 23 1241 1263 1240 1263 0.85
Sequence Information
- Coding Sequence
- ATGAATCTGtatgataaaaacaaacaactCTCAGGTTCAGAGCAAGATAACTTGGTAGCTTTGATTGTATCACATCTATTGCAAAAGAGTGAAGATAAGAAAATTTcaaaatctacatttttatgGTGGTCTGAGGCAGTTGAAGCTAAATTTTCTTCGCAGCACAAAgagaTATACTACACACCATACTGTAACACTTCAACCAGAGCAAATGGAAAGTTCTACTACAGATATTTAAATGTACGAGCAAAGTATATAGAGCGGGGACTCATCCAAAAGTCGTTAACAAAACTGTCAAAAAGACCCTCTCCAATTCCAGTGAAAGTTACAAcagAGCTAGCAGATGCATTAAACTTCTTAAGAAAATCAAGAGAGCCGTGGGATAAAGTGGTGAAGAACTGGGAGCTAACTTCTGCTGTTCGGTATAATGAAATTACCAACGAGGATAAGCCTATCCAGGACCACATATCAGCCTACTTAGCATATGAACTGGCTCAAGGACCAGAATTgTTTGAGCTGGATTTCAAACATTTACCACTAGAAGCAAGATCAGATATTAGTTTCTACACCAGCTTTACTGCAATTAGAGAGCGCATAGTGGATTTGGCAGCTGGCACGGCTACAAGTGACATTATACAGAACTACAATAATGCTGCACCTGAGAATGATGAAACTCGAGATTTGTGTGCACTACTCCTATTACCCTACATTCTGCTGACTCCCAAGAGAACTTATCTCACGACATCAGGAGATAGAGCTTCGTGGAAACCAAGTCTGCAAGAAAGTCGAGACAGTTTCATTGTTGTTTTAAGGGCGTCACCGCAAGCGACAAATGCAGCGCTTGCTCACAACCCCTTGGCTCCAGAGCAGCGATGTAACAAAAAGGAAGAACATGATGATAAAGTCGCAagTTTGGATGACCTTGCGACAGCTGAACGTAAACGAGAAGAAATTGCAAAACATCGAAAAATCACATCACAGCCTATAATTTTTGTTGTGGCTCACAACATTCAAAATATATCTGAGGTATACGTCCGCATTGCCAATTTAACATATAGAGTCGCATCACTTTGCAAAGCTGTAGATGTGCTATTTAAAGCATTTCAGTGTCTCCACATTAGCTATCCAGTTGCTTGCCAGGCTGTGTGGGTTGCTATTCAAAAAAGCAGCTTGAGCATGAGTCAGCTGACGTTGAAATGTGAGAAGTTTGGTCTGAGCCGAGGACTGCGTGACTTGCTGTCCAGTGGAGATCTGGTGGACGTGACCCTTGCCTGCCAGGGACAATATATCCAGGCACACAAGACTGTGCTGGCTGCCTGCAGTCCACACTTCAGGTCTCTCTTCAAGTTGCAGCCTTGGCAGCAGCCCATTGTGTTCCTGCAAGATGTGGAGCTGGCAAAACTTGAGGCCTTGGTGGACTTCATGTACAATGGAGAAGTGACAGTGCAGCAAGAAGACTTGGCAGGCCTGCTCAGACTTGCAGAGGCCCTCAAAGTCACAGGACTGGCTGCACAAGACAAGtcAAGTGAGGGAGAGCTGCTGACCACTGATGTACAACCTAAGACTTTATTGAGCCACCCTGCACCACCCCCACCTACACCCCCTCCAGCCAAGATTGCCAGACGCAGTAACAACTGTGATGTCTCCAAGCGTGCCACTTCACCTGAGCTAGAGGAGGTGCAGACCACCTCTGTACAAACCACCTCCCAAGTAGAGCAGCCACCTCATGCTGAGCAGTCGTGGGTGCCAGCCATAGACAACATAGGGAGCATGGTTCAAGACACTTGGCCACCATGCAGTCAAGCCAGTGGTAGCATTGTGACTGAGCCTGAGCAGGCGTGGGCACCAAAGACTGAATGTGGCTTAGCTGTAGAGTCACTTGAAGCTTCTGCTTTGTTAATGATGGATGACATCAAGGTGGAGCACGAGGAGTTACGTGACCTCTTTGAGGACCAGGGGTCAACCAACATGCAAGACTGTGAtgctgaagaagaaaaagactCGTCCCATCTCGCAGATCAAACCTCGCTGCAAGGTGACTCCTGGTGTGACGAGGCAGGCCCCTCCAGCACTAAGCCCAGCACCTCAGGCCTTGAGGCAAGCACTTCCAGACTGACTAGCACTTGTGATAAGGTAGCTAGCACTGAGGCCAGCACCTCAGGCCTTGAGGCATGTACTTCCAGACTGACTAGCACTTGTGATAAGGTAGCTAGCACTGGTGACATAGCTAGCACTAAGCAGCCAAGTCAGCGTGCAGTAGTCCCTGGTGTCAGCAGCAGAGGCCGTCGTCTGAAGAAGCGAGTTGTTGAGCCACAAGACAGCGAGAGTGAAAGCAGCGATGAAGACACTACCACGTCACCTTATTTTTGTCAAGATTGcaacgtttattttaaatgtaaaacatctCTGCAGAGCCACGTCAGCAAGACTCATGACAACAAGGCTCGTCAACCTGGGCAAGTCACCTTCAAATGTGACCTCTgtcctaaatattataaaagtaaagacAATTTGCGTGAGCACTATAGAAACAAACATCCAAGAAATTTGAGATTCTCGTGTAAGATTTGTGCAGCAAAGTTTTCTAATTACAGCGAATTTCagcaacataaaataacattacatgCTAAAGAACTTTACCCGTTTGTTTGCAAGGAGTGTGGAAAACAATTTGTAGAAAACAAACCTTTaagaaaacatttaatttcTGCACACGgcattgagataaaaattggCACAAACATGTCTTGTACATCTTGTGCTGAGAAGTTTCCAACATTTCAACTTAAGAAAGAACATATGACTCAACATCACCCCGAGTTGTGTTTCAAGTGTCGCTGGTGTCCACGTGTGTTTCATAATAAGTACCACCTAGCGTCACATGAACGTAAAGATCATGGCCGTCGTCTGAGGAAGCAAGTTTTTGAGCCACAAGACAGCGAGAGTGAAAGCAACGATGAAGACACCACGTCACTTTATTTCTGTCAAGATTgcgaagtttattttaaatgtaaaacatctCTGCAGAGCCACGTCAGCAAGACTCATGACAACAAGGCTCGTCAACCTGGGCAAGTCACCTTCAAATGTGACCTCTGTCCTAAATATTATAGCAGTAGCAAGTCTTTGGAACACATCGAGTACCACGAGTATATTAAGTTGAAACGTGGCCCTAAGTTGTCTTGTGGATTTTGTTTTGAGGAGTTTCAAACAATGCAGGTAAAGAAAGAACACATTGCTCAACATCACCCCGACATGTGTCTCAAGTGTCGCTTGTGTCCACGTATTTTTTATGAGAAGCATAGGAGACTGGCACATGAGCTTAATGTTCATCGTCAAAATGTTGATCATCCAGGCCGTCGTCTGAAGAAGCGAGTTGTTGAGCCACAAGACAGCGAGAGTGAAAGCAACGATGAAGACACCACGTCACTTTATTACTGTCAAGATTGCGACgtctattttaaatgtaaaacatctCTGCAGAGCCACGTCAGCAAGACTCATGACAACAAGGCTCGTCAACCTGGGCAAGTCACCTTCAAATGTGACCTCTGTCCTAAATATTATAGCAGTAACAACGCTTTGGAACACATCGAGTACTACGAGTATATTAAGTTAAAACGTGGCCATAAGTTGTCTTGTGGATTTTGTTTTGAGGAGTTTCAAACAATGCAGGTAAAGAAAGAACACATCGCACAACATCACCCCGACATGTGTCTCAAGTGTCGCTTGTGTCCACGTGTTTTTTATGAGAAGCATAGGAGACAAGCACATGAGCTTAATGTTCATCGTCAAAATGTTGATCATCCAGCGTCATAG
- Protein Sequence
- MNLYDKNKQLSGSEQDNLVALIVSHLLQKSEDKKISKSTFLWWSEAVEAKFSSQHKEIYYTPYCNTSTRANGKFYYRYLNVRAKYIERGLIQKSLTKLSKRPSPIPVKVTTELADALNFLRKSREPWDKVVKNWELTSAVRYNEITNEDKPIQDHISAYLAYELAQGPELFELDFKHLPLEARSDISFYTSFTAIRERIVDLAAGTATSDIIQNYNNAAPENDETRDLCALLLLPYILLTPKRTYLTTSGDRASWKPSLQESRDSFIVVLRASPQATNAALAHNPLAPEQRCNKKEEHDDKVASLDDLATAERKREEIAKHRKITSQPIIFVVAHNIQNISEVYVRIANLTYRVASLCKAVDVLFKAFQCLHISYPVACQAVWVAIQKSSLSMSQLTLKCEKFGLSRGLRDLLSSGDLVDVTLACQGQYIQAHKTVLAACSPHFRSLFKLQPWQQPIVFLQDVELAKLEALVDFMYNGEVTVQQEDLAGLLRLAEALKVTGLAAQDKSSEGELLTTDVQPKTLLSHPAPPPPTPPPAKIARRSNNCDVSKRATSPELEEVQTTSVQTTSQVEQPPHAEQSWVPAIDNIGSMVQDTWPPCSQASGSIVTEPEQAWAPKTECGLAVESLEASALLMMDDIKVEHEELRDLFEDQGSTNMQDCDAEEEKDSSHLADQTSLQGDSWCDEAGPSSTKPSTSGLEASTSRLTSTCDKVASTEASTSGLEACTSRLTSTCDKVASTGDIASTKQPSQRAVVPGVSSRGRRLKKRVVEPQDSESESSDEDTTTSPYFCQDCNVYFKCKTSLQSHVSKTHDNKARQPGQVTFKCDLCPKYYKSKDNLREHYRNKHPRNLRFSCKICAAKFSNYSEFQQHKITLHAKELYPFVCKECGKQFVENKPLRKHLISAHGIEIKIGTNMSCTSCAEKFPTFQLKKEHMTQHHPELCFKCRWCPRVFHNKYHLASHERKDHGRRLRKQVFEPQDSESESNDEDTTSLYFCQDCEVYFKCKTSLQSHVSKTHDNKARQPGQVTFKCDLCPKYYSSSKSLEHIEYHEYIKLKRGPKLSCGFCFEEFQTMQVKKEHIAQHHPDMCLKCRLCPRIFYEKHRRLAHELNVHRQNVDHPGRRLKKRVVEPQDSESESNDEDTTSLYYCQDCDVYFKCKTSLQSHVSKTHDNKARQPGQVTFKCDLCPKYYSSNNALEHIEYYEYIKLKRGHKLSCGFCFEEFQTMQVKKEHIAQHHPDMCLKCRLCPRVFYEKHRRQAHELNVHRQNVDHPAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00630730;
- 90% Identity
- iTF_00630730;
- 80% Identity
- iTF_00630730;