Etor001395.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439127.1:16255277-16258873[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.033 2.3 9.2 4.4 2 23 213 235 213 235 0.91 2 11 0.0012 0.084 13.7 1.0 2 23 297 319 297 319 0.94 3 11 0.037 2.6 9.0 4.9 3 23 400 421 399 421 0.96 4 11 0.23 17 6.5 0.0 2 23 618 640 617 640 0.92 5 11 0.5 35 5.5 6.4 2 23 680 702 679 702 0.95 6 11 0.92 65 4.6 3.7 2 23 716 738 715 738 0.93 7 11 0.00043 0.03 15.1 0.1 2 23 799 821 798 821 0.91 8 11 0.038 2.7 9.0 1.7 1 23 892 914 892 914 0.98 9 11 4e-05 0.0028 18.3 4.0 1 23 930 952 930 952 0.99 10 11 0.0003 0.021 15.6 2.5 1 23 988 1010 988 1010 0.98 11 11 0.9 64 4.6 3.0 1 23 1027 1050 1027 1050 0.95
Sequence Information
- Coding Sequence
- ATGGACTCACGCATAGAACCGGTAGCAGGCGTAACCGCAGTGGCTGCTGCTGCACCGGCACGCTTGTCCTTGCTGGAGCGTTCAGCACCTACTGCAGCCGCTCTTGCAAGCACTCGCACGCCAAACAAGAGATTGATGGCAAGTGCTGCGTCACCGTCCGAAACAGAGTCCGAGCTGATGCAACCGCACAGCAAAAAACGCAGAAAACAGTCCCGACCTATTCGAATACCAACCCCCACCTCTGCCGAGCTTTCCACTCATTTAAATACTATGGGACGAGACGATGAAGCTGCGGCTAAGCAAGAAGACGAGGAAGCCGAAGAGGGTGAAGTGACTGACGGGTCGTCGTATCTATTGCCTCATCAGTTAGCTGATATGTGCTCTGGTATTTCAGATACAAATCAAGAACACGGATTAGAGCGACAAATGACTTTGCAATCATCGTCACAAGCTGAGCTTAATGCTAGTTATCCTGATTCATATGCCAGCAATGCAATGCAATCACTGCTTCCTACCTTACTTTCCTTTCCTCCACACTTCCTCTTACCTATGTTGCCATCGTCCTCACAGCAAAATTCAGGACCTGGTGTGCCTGGATCAACTAATGTCCCTCCTCGTATTTTTAATCTTGAAGCTTATTGTGAGTTGTGTAGTAAAGAATTCTGCAACAAATATTTCTTAAAGACTCATAAAGCAAACAGGCACGGTATTTACGTAAAAAGTGGGGACACACCACCGACCAGCACCACACCATTACCTCCTGTGCAAGCACCACCCATCCAATTACCCCCAAGTACGGAGCTAGTAGCAACTTCACCTTCTCCAAGTTTAACTGTTACACCTATAAAAGTAACACCAACAAAAACACCAACAGATCAGTTTAAAGCAAGTTGcgatatttgcaataaaaattttaatagtgaGTACTCTGTTAAACGGCACAAAGCTAAAATTCACTGGGGAGGATCCACAGAAGGTTCACTTGAAACAAGTGGTGGCGAAGAAACTTCACGTCCCCCCTGTAGCCCTGCAAGCATTGAACCTGAGTGTGCAAATATCGAGGAAAGTGACAACAAGCCTCAAGATACACCTAAAAGTAGTGAGATGAACGAAGAAATGCCACAACCACCTCCCAGCACGTCACCACTGTCACCAGGTAGACTGCGGAGACTTGGTGTTATTAATGCAGATGCATTCTGTGAGATATGCAGCAAAgaatattgcaataaatattttttgaagacTCATAAATTAAAACGTCATGGCATAATTGTGCGCGACTCAGATGACTGCAAGATGGGAGATGGTAAGCTTGCAAATATTAGTGGAGCTTACAGGATCAAAGGTTGGGAGCAAGGCACGAGCATGCAAACTAGTCCACTCAATCTTACGCTACACGAACAAGGTATAAGTAACAACAGCTCTGACTCAGGGGGTGTAAATATTGGTATGATGATTCGCACAGGTGGCGCTGACGATGACGAGGAAGGTTTGATTAGCAGCTCGTTCATTCTTCCAAATAAACAAGAACCAACGTCTCCACGATCTGACGAGGCCACTCCTACTAGTGGCAGAGATCTCAGTGAAGATTTGCAAAAATTGCAAACAATGTTACTTCAACTCAACGCACTCAATGGTTCATCGGTAACTTGTGACGTATTTGGACCACAACAAGAAAATGTTAGCACGCCACGTGAGAATGTAGAAACTGTAGAGGCGAATGGTGCAGTTAAGGTGGATCATTATGAGTCACCTCGTCCATCGTCCACTCCTTCGCCCTCGTCTCTTTCACTCGAGCgtcaacagcaacaacaacaagacTCACAGCACTTAGAAGGAGACGATGCAGTACCGTGTGATGTATGTGGCCAAGATATTTACCCCAGTTCTATGTTAGCGCAGCACATGGCTGAAGAACACGGCACAACAACACCACCGccgcaacagcaacagcaacaaatTACAACTGAGGAAGCTGAAGTGGGTGATAATAGCAGTCTAGGCAGCGGCAACATGCCTTTTTATTCTACTAGTTGTTATTGTGACATTTGTAACAAAGAActgtgtaataaatattttaaaaaagtacatatGCAAAAAATGCATGGCATTGAAATTAAAGATAATGCATTAAGTGGTGGTGTACCGTGTGATATATGTCACAAACAATTATGTAGCAAATATTTTGTTCGCGTGCATAAACAGAACACCCACGGTATCGTAGATCTGAGTGCTCCAGGTGGTGCTCCACCGTCAGGACGAGTAGGTGCTGGTTCTCCATTAGGTACACCAGTTCCCGCGTTGCAGTCTCCAATACAGCAGCCTCAAGATGCATCGCTTAAGCCTGCTGAGGTAGCTGATCTAAGCCATCGGTATTACACTCACTTCAATGTCGTGTGTCCGCTGTGCAGCAGACGTTTTCGAAGTGCCAAATGGCTAAAAGCTCACCTCGTTAACGACCACGCAGATGCAGGCCTTGAACTTGCACGTGAACTCGAGCCAAAATTCTCTCCTAAGCCTAACTTTAAACTTCAACAAGGAGAAGAAAATGATGGACAAGGTAATAATTTACCTCCACCTCCACCCCCTCTCCCATTACCTGCAGAGAGTACATCAGCAGCAGTATTATCTAACTTATTGCGATCTAATGACGAGCGCTCCGGTGGTAGTAATTACCACTGTTCATACTGCAGCTTCTCTACACCTGTATTGTCTCTACTTTTCGTGCACGAGCGCTCACACACTGGCCTTCCTGCAGGCATGCCAGCGCCGGCAGCGCGGCCCGCCTATAGTTGTCACCTCTGTTTCAAGACTTTTGGTCAAACAGAAATGCTACAGCGTCATCTACGCACACATCAATTATCAGGGTTGCAGGGCGCAGCCGAAGAGCGACACGATGATGTCGAAGAAACTGGAGAAACGCCTACACAGCAGCGAGAATCAAAAGCAGCAGCAGGTCGCTATCGCTGCGCTCAATGTCACCAGCGTTTCCGTACCAGAGATTTGTGGTCAGCACATATGCAAAATCACAGCAAAGGAGTCGAATCGAGTAGTGGTGACCGCTCTACAGGGCCTCCCTACTGCTGTCCACTTTGCTCATATTCAACTGATGTGGTAGCTTCATTTAAGAAACATGTAAAACATGAACATTGGCACGGTGCCGAGGGTGCAGCTCAGTCACGTCTGTGGCGAAGTTTGGCCCAAGTTGAAGTTTCACGTACTTTACAAGACGCTGCACGTGAGTCTCACGTGCCAGCTACATATGCAGTGCCACAAGCGCCTCCTGAGCACGGTGACCGCTTTATCATGCAGCCTTTTCTCCTGGAGGAACCGCCGGATTCATCACCAGTTGCTTCTCAGCCACCCCCGCGTTCTCCAGTAGAAATGCCGCCGCTAAAGAAAGAAGAACCTACTCCACGTCCCCGCTCGCCTGCCTCTTCTGGTGGGGATGATTTGGAGCAGGTTCAGCATACGACTTCAGTGGCGACTACTGCTTCATCTGCTGACGGTACATTTGTTCCTTCCTTGGTGTTCCTCCCAGTTCGCGAAAAAGTGTCTGGCACGCTTACTGTGTCCTTCACCTTAACGCCCGCTTAA
- Protein Sequence
- MDSRIEPVAGVTAVAAAAPARLSLLERSAPTAAALASTRTPNKRLMASAASPSETESELMQPHSKKRRKQSRPIRIPTPTSAELSTHLNTMGRDDEAAAKQEDEEAEEGEVTDGSSYLLPHQLADMCSGISDTNQEHGLERQMTLQSSSQAELNASYPDSYASNAMQSLLPTLLSFPPHFLLPMLPSSSQQNSGPGVPGSTNVPPRIFNLEAYCELCSKEFCNKYFLKTHKANRHGIYVKSGDTPPTSTTPLPPVQAPPIQLPPSTELVATSPSPSLTVTPIKVTPTKTPTDQFKASCDICNKNFNSEYSVKRHKAKIHWGGSTEGSLETSGGEETSRPPCSPASIEPECANIEESDNKPQDTPKSSEMNEEMPQPPPSTSPLSPGRLRRLGVINADAFCEICSKEYCNKYFLKTHKLKRHGIIVRDSDDCKMGDGKLANISGAYRIKGWEQGTSMQTSPLNLTLHEQGISNNSSDSGGVNIGMMIRTGGADDDEEGLISSSFILPNKQEPTSPRSDEATPTSGRDLSEDLQKLQTMLLQLNALNGSSVTCDVFGPQQENVSTPRENVETVEANGAVKVDHYESPRPSSTPSPSSLSLERQQQQQQDSQHLEGDDAVPCDVCGQDIYPSSMLAQHMAEEHGTTTPPPQQQQQQITTEEAEVGDNSSLGSGNMPFYSTSCYCDICNKELCNKYFKKVHMQKMHGIEIKDNALSGGVPCDICHKQLCSKYFVRVHKQNTHGIVDLSAPGGAPPSGRVGAGSPLGTPVPALQSPIQQPQDASLKPAEVADLSHRYYTHFNVVCPLCSRRFRSAKWLKAHLVNDHADAGLELARELEPKFSPKPNFKLQQGEENDGQGNNLPPPPPPLPLPAESTSAAVLSNLLRSNDERSGGSNYHCSYCSFSTPVLSLLFVHERSHTGLPAGMPAPAARPAYSCHLCFKTFGQTEMLQRHLRTHQLSGLQGAAEERHDDVEETGETPTQQRESKAAAGRYRCAQCHQRFRTRDLWSAHMQNHSKGVESSSGDRSTGPPYCCPLCSYSTDVVASFKKHVKHEHWHGAEGAAQSRLWRSLAQVEVSRTLQDAARESHVPATYAVPQAPPEHGDRFIMQPFLLEEPPDSSPVASQPPPRSPVEMPPLKKEEPTPRPRSPASSGGDDLEQVQHTTSVATTASSADGTFVPSLVFLPVREKVSGTLTVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -