Basic Information

Insect: Ecdyonurus torrentis
Gene Symbol: PRDM9
Assembly: GCA_949318235.1
Location: OX439131.1:49306779-49343797[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.22 15 6.6 1.2 2 23 1001 1023 1000 1023 0.95

2 8 0.00017 0.012 16.4 0.2 1 23 1094 1116 1094 1116 0.98

3 8 0.00051 0.036 14.9 4.9 1 23 1150 1173 1150 1173 0.94

4 8 7.2e-07 5.1e-05 23.8 2.0 2 23 1180 1201 1179 1201 0.98

5 8 0.0001 0.0071 17.1 2.1 1 23 1207 1229 1207 1229 0.99

6 8 0.00019 0.013 16.2 4.5 1 23 1235 1257 1235 1257 0.99

7 8 9.9e-05 0.007 17.1 2.0 1 23 1263 1285 1263 1285 0.99

8 8 0.00046 0.032 15.0 2.5 1 23 1291 1313 1291 1314 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.22	15	6.6	1.2	2	23	1001	1023	1000	1023	0.95
2	8	0.00017	0.012	16.4	0.2	1	23	1094	1116	1094	1116	0.98
3	8	0.00051	0.036	14.9	4.9	1	23	1150	1173	1150	1173	0.94
4	8	7.2e-07	5.1e-05	23.8	2.0	2	23	1180	1201	1179	1201	0.98
5	8	0.0001	0.0071	17.1	2.1	1	23	1207	1229	1207	1229	0.99
6	8	0.00019	0.013	16.2	4.5	1	23	1235	1257	1235	1257	0.99
7	8	9.9e-05	0.007	17.1	2.0	1	23	1263	1285	1263	1285	0.99
8	8	0.00046	0.032	15.0	2.5	1	23	1291	1313	1291	1314	0.96

Sequence Information

Coding Sequence: ATGTTTGCAGACCATCGTTGTCATGCTTGTGCAGAGAAGAAACAAGCCACAGCTTCTTTGCTggaccaaaagtttgagaaggCAGTAGATTTTCTAAATGTTCAGAATGATGACAAAGATAAAGAGGTATGCAGAGACTGTGAGCAGCAACTTGATCACTGGTCCATGTTTCTACGTAGAGCAGAGAAAGCTGAAGCATTGTTCAAAGTTGCTGCTCAACGTGCTGCGTCAATCACAGAGCGCGCATTGTGTGAGAAATTTGACATCCAAGCTTGCATCGTGAGAGTGGAGAGAGTTGTGAGTGATGTGAGTGAGCAAGAAGTTGACGTTGTAGAGAGCAACATTGCAAGTGTCAGTAACAGTGCAGCGTTAGAGAATACTGTTGCAAGTAACAGTGCAGAAGTTGATAATACGATGTTTGCAGATCATCTTTGTCATGCTTGTGCAGAGAAGAAACAAGCCACAGCTTCTTTGCTGgaccaaaagtttaaaaaagcaGTAGATTTTCTAAATATTCAGAATGATGACAAAGATAAAGAGGTATGCAGAGACTGTGAGCAGCAACTTGATCACTGGTCCATGTTTTTATGTAGAGCAGAGAAAGCTAATGCATTGTTCGAAGTTGCTGCTCAACGTGCTGCGTCAATCACAGAGCGCGCCTTGTGTGAGAAATTTGACATCAAAGCTTGCATCGTGAGAGTGGAGAGAGTTGTGAGTGATGTGAGTGAGCAAGAAGTTGACGTGGAGTCCAGCGACGTTGTAGAGAGCAACATTAAGAGTGTCAGTAACAGTGCAGTGTTAGAGAATATTGTTGCAAACGATATGTTTGCAGACCATCGTTGTCATGCTTGTGCAGAGAAGAAACAAGCCACAGCTTCTTTGCTggaccaaaagtttgagaaggCAGTAAATTTTCTAAATGTTCAGAATGATGACAAAGATAAAGAGGTATGCAGAGACTGTGAGCAGCAACTTGATCACTGGTCCATGTTTCTACGTAGAGCAGAGAAAGCTCAAGTATTGTTCAAAGTTGCTGCTCAACGTGCTGCATCAATCACAGAGCGCGCCTTGTGTGAGAAATTTGACATCCAAGCTTGCATCGTGAGAGTGGAGAGAGTTGTGAGTGATGTGAGTGAGCAAGAAGTTGACGTGGAGTCCAGCGACGTTGTAGAGAGCAACATTGCACATGTCAGTAACAGTGCAACGTTAGAAAATATTGTTGTTAGTGACAGTGCAGAAGTTGATAATGTAAAATCTGTAGTGTCTCAGGAAAAtgtaaaacttacaaaatgttACAAGTGTCATGAATACGATATGTTTGCAGACCATCGTTGTCATGCTTGTGCAGAGAAGAAACAAGCCACAGCTTCTTTGCTggaccaaaagtttgagaaggCAGTAAATTTTCTAAATGTTCAGAATGATGACAAAGATAAAGAGGTATGCAGAGACTGTGAGCAGCAACTTGATCACTGGTCCATGTTTTTATGTAGAGCAGAGAAAGCTCAAGTATTGTTCAAAGTTGCTGCTCAACGTGCTGCATCAATCACAGAGCGCGCCTTGTGTGAGAAATTTGACATCAAAGCTTGCATCGTGAGAGTGGAGAGAGTTGTGAGTGATGTGAGTGAGCAAGAAGTTGACGTGGAGTCCAGCGACGTTGTAGAGAGCAACATTGCAAGTGTCAGTAACAGTGCAGCGTTAGAGAATATTGTTGTAAGTGACAGTGCAGAAGTTGATAATGTAAAATCTGTAGTCTTGCGCTCGTTCTTCGCGATGGAGGAAAACTTTGAAGACATGGACGGCGAGATGTTGGCAACCAAAGCAGCCACAGAGACTTCCATGTATTTCTCGCCTGAACAATGGGAGCAGTTCTCACCTATCGAACGTCAGCGGCGAGTCTCGCAATTGAGGAATCATTTTGTAATGCAGAAAATTGGCATGACAAATACTCCACCTGAGTTCGTACTTCAGTTCAGAAAACTTGAGGCAAGAAAGAAAGCTGCAGAGTTGAAGAAATTAACTCGTGACCAGAATCAAGAAAGACCCATCAAGGCCCCTGTAGTCAAAGACGTGAAGATCCTCAAGAACAAGGACGGCTACTACTATGGTAAAGTAGCTAGACAAACACCAGACTGGCCTGGAGTCGACTACGTACTCAAAGAGAGAGACCCAGAACCTCAAAAGCAGAGAGGTAATGTGTTGAAGAGAAGCTACACACCTGCACTGCAGAGTGGTGGGCAGGCCTCGTGTAGTAGAGTCTTGACAGTCAAGCAGACGGACAGAAGCTACGTACAGGCCTCGAGTAGTAGGGCCTTGCCAGCCAAGCAGATGGACAAACCAGAGCAAGGGGACCAGGAAGACCAGCCTAGGTACCCCAAGAGAAACATCAAGAGGCCGTATTACAAAGAAGATCCTGTACCTGAGGAGGAAGACTTCAGctGTTCTGTGCTGGGAGCGTGTGAAGACCACGGCAGACCTTTCAGATTGTTTAGCACTCCAGTCAAGTCATCTGTATGCAAGGACAGAGCAGCTCGCACGCTACCCAAGGGATTACGTATTGGAAAGTCGTCAATCCCTAATGCAGGTATGGGAGTTTTTGCAGTGCTCCCCATTCCTCCACACACCATGCTGGGGCCTTACGATGGCCAGCTACTGACCAAGAGCAACAATGACGGCTACTGCTGGATGATTCGTCGAGGCAGCGCAGGCAACCTGAGTGTTGACGCCAAAGACGAGACGAGAGCCAGCTGGTTGCGCTACGTCAACTGTGCCACTCATGACTCCATGCAGAACCTGGTGCCTGTGCAAGAGAAGGGACAAATCTTCTACCTCACCAGGCAGTGGATTGCTCCAGGAGATGAACTGCTGACGTGGTATGGCAAAAGTTTCATGCTAGACCTAGGGATTGACCTGCAGGCTTACTTCAAACCTAAGACTGATGAGTCTAAGACTGAGCGAGCCTTGTCACCTGTCATCTGGAAGAAAGTCGGCAAGGCGCTGCAGTGCGTGTGGTGCTCCATCAGTTTCTCCAGCGTCAACTTTGTCCAACGTCACGTGCACACCAAGCACGGCTCAGAACATTCTCTTCTTGTCCTGCAGCACAAAGCAACCATCGTGTTCCCTCCGTCACGAAGCAGCACGGCTATCGGTGCATGTTTTGTGCAGAATGAGGTGACGTCAAGCCTCATGATGAAACTACAGCAACGTGCAGGGGGGGaagtgacagagagagacaaAGTGTTAGCTAGGAGAGTGAGAGATGATGGTAAAGACAGACCTTTTGTGTGCAGTGTCTGTGGTAATAAATATACTGAGCAGGGTAGCTTGACTGCACATAAGAGAGTACATGATGAAGCTAGGGCTCTCAAGTGCAGTCATTGTCCTTATGTAACTGGAATCAAACAACATTTTGATTTTCACATGTTGACTCACACGGGACAAAGAGATCATGTGTGTCAAGTGTGCAACAAATCTTTCACACATAAACATACTCTAGTAATGCATGTGAAGGAAGTTCATGACAAAGTGAGAGATCAGCAATGTCCGCATTGTGAGAAGACTTTTGCTCAGAAGTCAAGCTTGGTCACACATGTCAGGACACATACAGGTGAGAAGCCTTATCAATGTAGTCAATGTGAATATAAGTGTGCAGTCAGTGGTGACTTGTCTAAACATATGAGAACCCACTCAGGTGACAAACCTTATCAATGTAGTCAATGTGAATATAAGTGTGCAGTCAGTGGTCACTTATCTAGACATATGAGAACCCACTCAGGTGACAAACCTTATCAATGTAGTCAATGTGAATATAAGTGTGCACAAAGTGGTGCCCTGACTTCACATCTGAGAACCCACTCAGGTGAGACACCTTACCAGTGCACCATGTGTGACTACAAGGCTGCACGCAGTAACAATCTCAAGAGTCATGTCAACAAACATCACTGA
Protein Sequence: MFADHRCHACAEKKQATASLLDQKFEKAVDFLNVQNDDKDKEVCRDCEQQLDHWSMFLRRAEKAEALFKVAAQRAASITERALCEKFDIQACIVRVERVVSDVSEQEVDVVESNIASVSNSAALENTVASNSAEVDNTMFADHLCHACAEKKQATASLLDQKFKKAVDFLNIQNDDKDKEVCRDCEQQLDHWSMFLCRAEKANALFEVAAQRAASITERALCEKFDIKACIVRVERVVSDVSEQEVDVESSDVVESNIKSVSNSAVLENIVANDMFADHRCHACAEKKQATASLLDQKFEKAVNFLNVQNDDKDKEVCRDCEQQLDHWSMFLRRAEKAQVLFKVAAQRAASITERALCEKFDIQACIVRVERVVSDVSEQEVDVESSDVVESNIAHVSNSATLENIVVSDSAEVDNVKSVVSQENVKLTKCYKCHEYDMFADHRCHACAEKKQATASLLDQKFEKAVNFLNVQNDDKDKEVCRDCEQQLDHWSMFLCRAEKAQVLFKVAAQRAASITERALCEKFDIKACIVRVERVVSDVSEQEVDVESSDVVESNIASVSNSAALENIVVSDSAEVDNVKSVVLRSFFAMEENFEDMDGEMLATKAATETSMYFSPEQWEQFSPIERQRRVSQLRNHFVMQKIGMTNTPPEFVLQFRKLEARKKAAELKKLTRDQNQERPIKAPVVKDVKILKNKDGYYYGKVARQTPDWPGVDYVLKERDPEPQKQRGNVLKRSYTPALQSGGQASCSRVLTVKQTDRSYVQASSSRALPAKQMDKPEQGDQEDQPRYPKRNIKRPYYKEDPVPEEEDFSCSVLGACEDHGRPFRLFSTPVKSSVCKDRAARTLPKGLRIGKSSIPNAGMGVFAVLPIPPHTMLGPYDGQLLTKSNNDGYCWMIRRGSAGNLSVDAKDETRASWLRYVNCATHDSMQNLVPVQEKGQIFYLTRQWIAPGDELLTWYGKSFMLDLGIDLQAYFKPKTDESKTERALSPVIWKKVGKALQCVWCSISFSSVNFVQRHVHTKHGSEHSLLVLQHKATIVFPPSRSSTAIGACFVQNEVTSSLMMKLQQRAGGEVTERDKVLARRVRDDGKDRPFVCSVCGNKYTEQGSLTAHKRVHDEARALKCSHCPYVTGIKQHFDFHMLTHTGQRDHVCQVCNKSFTHKHTLVMHVKEVHDKVRDQQCPHCEKTFAQKSSLVTHVRTHTGEKPYQCSQCEYKCAVSGDLSKHMRTHSGDKPYQCSQCEYKCAVSGHLSRHMRTHSGDKPYQCSQCEYKCAQSGALTSHLRTHSGETPYQCTMCDYKAARSNNLKSHVNKHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -