Etor014713.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439132.1:41990143-41995050[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.035 2.5 9.1 3.2 1 20 165 184 165 186 0.94 2 14 0.049 3.5 8.6 0.2 1 23 198 221 198 221 0.96 3 14 9.6 6.8e+02 1.4 0.3 1 10 226 235 226 240 0.86 4 14 0.043 3 8.8 0.3 1 23 417 439 417 439 0.98 5 14 0.023 1.6 9.7 0.1 2 23 475 497 474 497 0.94 6 14 0.00066 0.046 14.5 3.0 1 23 501 523 501 523 0.98 7 14 0.047 3.3 8.7 4.5 1 23 529 552 529 552 0.95 8 14 0.0082 0.58 11.1 0.5 2 23 556 577 556 577 0.96 9 14 1.6e-05 0.0011 19.6 0.2 3 23 585 605 584 605 0.98 10 14 0.00013 0.0092 16.7 2.3 1 23 611 633 611 633 0.99 11 14 0.00014 0.0097 16.7 3.6 1 23 641 663 641 663 0.98 12 14 0.00049 0.035 14.9 3.1 1 23 669 692 669 692 0.98 13 14 0.0057 0.4 11.6 4.4 1 20 698 717 698 720 0.94 14 14 1.1 80 4.3 1.0 1 23 726 749 726 749 0.93
Sequence Information
- Coding Sequence
- ATGGCCTCAAAGCAAATACCGCAGTGCTTCGTATGCAATGAAGAAGCAAACAGTGTCAGTATAATTACAAGAAGTTTCACTTGCTACTCCAAAACTCCATATGCTCAGTGTATAAGTCAAGTGCTAGGAGAGGACTTCCTGGTTGTCGTATCACCTAGCGACAAGGTTTGTAAACAATGTTCGTCTCTAATCAATCGAAGAGACAAGttgaaaattgacctaaatgAAATTGAAACCACACTAGCAGAACGgctaaaaagaaaatatgaaattctTGTGAAGGATAGTGAAGCTACTCCACCATCTGCAGAATTCCAAGCTCCACGACAAAATGACAGTAATGATGTTCGTCATGACTCTGCCATTCAGAAACCAAGAACGAAGCTTCAAGAGGTTCCAGCTGGCAAAGTAATTGTTGTTCGACAAAAGAAGGCTACAAGTGAAACTAAGCCCATTGCTTCAACCTCCACTGCATCCACCTCTTCTCTTTTACATCAATGCAAAAACTGTGAATTTTCTTCTGTGAACTCTTCAGATTTAAAGACTCATAAATGTGGTGAAACAAGTGCAAGTGAAAAAGGCATTCCTAAATTTCAgtgcaatttgtgtgactatgGAGACTCCCGTGCATCTGTCCTGATGAAACACCTACTAAGTTTACATGAAGATCCCTCTTATCATTGTAATATTTGTCAGGCAACATACCATAAGATGGAGGAGCGCTGCTGTCATGTCAGAGACGAGAGTGACGACTTGCCTGTGTTGCCACCTGATTACAGTGCTACTACACAGCTCCAAACAGCTCATGACGACAGCTCTGAGGAACTGCCACTTTCATTAcgacaactaaaaaaaaagtcaaaatataaaactgtcATGGTACCCTTTGTAGAGTCTACTTACACAACCccagaaaagaaaaagaaacctCCATCAAAAAAGCCCACCCCTAAAAAGCAgcagattttaattaaaactagaaAAGATGGTGTTAAAATGTGTGGAGTAACTAAAATTATGATTATCAAAGGTACTgacattaaaagtaaaaaatcagATGAGATAAAACCTAATTCACAGCATATGAAAAAACTTCCTGGTTCACAGCATATCGAAAAACTTCCTGATTCACAGGATATCAAAAAACTTCCTGATTCACAGCATATTGAAAAACTTCCTGACATTTCAGAGATAAAAGCTGAAAATGTGGAAGATGAATCTCCAGTAATTTCTCAAGCTAAACAAATTTTTGAATGTGGAATTTGTTCTATAAGAATGGATTCTCGGGAAGAATTACAAGAACATTTTAAAACTCATAGCAAAGAGAAAATTCACTGTACACGTTGCAAAGCTAAAATGCCAAATTTTGCTGCATATAGAAAACATCTAATGTATCATGTTACACGTCCCAAGGATCCTATCACATGTTCTGAATGTGGGGAAATTCAGTATACCTTTGAGTACCTGAAGGCACATATGAGAGCAAttcataaatgtaaatttacatgTGCACATTGTGAAGAGCAGTTTGCACATGTCTCTGTACTGAAGAGACATATCAAGCGACATATTGAATCCACCAAATATTTTTGTCACGAATGTAATATTTACTTTCCACAGATGCAAGGATATCGTCATCACATGAAGTTTGTTCACAGAGATCCAAAGTGTAAAGTTTGTGGTAAAATTATTCCTGACAGTCGTAAACTTAGAGATCATGAAACACGTCATATTACTGAAAAAGAAGGTTTATGTCCATACTGTGGGAAAGTTTTAAAGactaaaaatgcattaaaaattcatataatgcAACATACTGATCAATATAAATACAGATGTAACATTTGTAATAAAGGTATAACAACAAGACATGCATATAATGAACATATGAATAGGCACTTAAGTACTCCAAAGTTATTATACACCTGCGATAAATGTGGAAAACAATTCAATCACAGTGGTTCCTTCTCTCTACATCGTAAGTGGCATGACAATCCATTTCCATACACATGTGAGTACTGTGGCTTGAAGATGCGTCACACATCCCTCCTGAGAAATCACATCAGGAAGCAACACACCGGAGAAAAACCTCATGAATGTCCTCACTGTCACAAACGTTTCCTAACTAAAGGACAGCTGAGAAGTCACTTACCTCAACATACAGGAATATTTGAGTTTAACTGTGTAGACTGCAATAAAGGTTGGGTCAAAAGAGAGTATTACAATAATCATAGATTTAAAGTACATGGAGTTCCATTACCACAACGAATAATTCGTTCCAAAGCTGATTACAAACTAGTAATTCCTGATGATGGACCTCCTCCACCAATGCCAATCATTGAAGATTCATCTGATGACAATGATAATATGGCCAGTGAGATTCCAAGAGCAGTAATACATATCAACTCTCAAGCGTATagacattaa
- Protein Sequence
- MASKQIPQCFVCNEEANSVSIITRSFTCYSKTPYAQCISQVLGEDFLVVVSPSDKVCKQCSSLINRRDKLKIDLNEIETTLAERLKRKYEILVKDSEATPPSAEFQAPRQNDSNDVRHDSAIQKPRTKLQEVPAGKVIVVRQKKATSETKPIASTSTASTSSLLHQCKNCEFSSVNSSDLKTHKCGETSASEKGIPKFQCNLCDYGDSRASVLMKHLLSLHEDPSYHCNICQATYHKMEERCCHVRDESDDLPVLPPDYSATTQLQTAHDDSSEELPLSLRQLKKKSKYKTVMVPFVESTYTTPEKKKKPPSKKPTPKKQQILIKTRKDGVKMCGVTKIMIIKGTDIKSKKSDEIKPNSQHMKKLPGSQHIEKLPDSQDIKKLPDSQHIEKLPDISEIKAENVEDESPVISQAKQIFECGICSIRMDSREELQEHFKTHSKEKIHCTRCKAKMPNFAAYRKHLMYHVTRPKDPITCSECGEIQYTFEYLKAHMRAIHKCKFTCAHCEEQFAHVSVLKRHIKRHIESTKYFCHECNIYFPQMQGYRHHMKFVHRDPKCKVCGKIIPDSRKLRDHETRHITEKEGLCPYCGKVLKTKNALKIHIMQHTDQYKYRCNICNKGITTRHAYNEHMNRHLSTPKLLYTCDKCGKQFNHSGSFSLHRKWHDNPFPYTCEYCGLKMRHTSLLRNHIRKQHTGEKPHECPHCHKRFLTKGQLRSHLPQHTGIFEFNCVDCNKGWVKREYYNNHRFKVHGVPLPQRIIRSKADYKLVIPDDGPPPPMPIIEDSSDDNDNMASEIPRAVIHINSQAYRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -