Etor006147.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439129.1:7936841-7946562[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.1 4.3e+02 2.0 3.7 1 20 194 213 194 217 0.92 2 15 0.00055 0.039 14.8 1.6 1 23 222 245 222 245 0.98 3 15 0.0015 0.11 13.4 2.7 1 23 347 369 347 369 0.98 4 15 0.00032 0.023 15.5 0.4 1 23 375 397 375 397 0.95 5 15 0.26 18 6.4 0.7 1 20 401 423 401 425 0.82 6 15 1.6e-05 0.0012 19.6 0.4 1 23 428 450 428 450 0.98 7 15 1.7e-05 0.0012 19.5 4.0 1 23 455 477 455 477 0.96 8 15 9.5 6.7e+02 1.4 2.5 1 23 485 509 485 509 0.93 9 15 0.016 1.1 10.1 0.5 3 23 532 552 530 552 0.94 10 15 0.095 6.7 7.7 0.0 3 23 564 584 562 584 0.96 11 15 0.55 39 5.3 1.9 1 23 590 613 590 613 0.89 12 15 7.8e-05 0.0055 17.4 0.5 2 23 618 640 617 640 0.94 13 15 6.2e-05 0.0044 17.7 0.6 1 23 646 668 646 668 0.97 14 15 3.1e-05 0.0022 18.7 0.2 1 23 674 696 674 696 0.97 15 15 3.1 2.2e+02 3.0 1.8 1 23 702 725 702 725 0.91
Sequence Information
- Coding Sequence
- ATGGCTGGGTTATTTAGTGATTTCAATGACCAAGAAGACAAATCTCAGTATTGCCGCACCTGTGGCCAAAAAAGTGATGAAATGGTGCCTATATTTGAGGAGGAAGGATTCGATAGAGAGCTTGCTGAAAAGATGAACCAATGCTTACCAATTTCGGTGTCTGAAAGAGACTGGTTACCTCTGCAAGTGTGTCTGCGTTGTGTTTTGTGGGTGGAAACAGCACATCAACTTCGCAACTCGTGTCTCACCGCTGACAAGAAGTTGCGGGGAATATTTCTTGAGCCTCCAGACTCCATGTTAATTGATAGTGATCTAGAAGAAGATTACGGTAGCTCACATTTTGATAATGCTGATTATGGATCAGACAATGAACAACCAGCTGAGTCTTCAACTTCAAATAAATCACCCGCACAAGCTTCtgaagcaaaaaaagaagagatTAGTGGTGGTCTTCGATTTCTTGCAGCAGAACTTGGAGTACAAAACCCAAATTCATTATTGATAGTGAACAAGGAACCTTCACAATTTGATTCTTTGTATCTTCAGATGCCAGCTGCCAAAGGTGTGGAGCGTCCACcattttattgtcatatttgCCGTGAAAATATGAACTCGCGTCACACGGTTAGACGTCATTATtggAGGAACCATAAACTTGATATATTTCCCTGCAAAATATGCTACGTATTTTTCTCTAAATTTGATATGTTGAAAGACcatattaaaacatttcatcCCAAGTTCCAGTTCCGAAAATTAATTGGTCCTACACCAGAACCTCAAGAAAATtggaaaaagagaaaatttgtGAAAGTTTATGAGgaaaataaaactacaaaaacTTGTCGCAGGTGTGGAGAGATATTCCTGGCAGATGACGTGGAAGCATGGAAAAAACATGGAATGAAACATAGAAGAGATGAAAAGcttgaaaaactaaaaaaatctaatattaaaTGTGACTATTGTGAGAATTTTTTTCTATCAGAAGTATCTAAACAATGCCATATGGAATTCAATCATAAGGAATATAAGCGTTATGAATGTGAAATTTGCCAGAAAAAATTCCgtgtaaaacaattttataaggATCACAAatTAAGCCACACATCAGGGCCTTCATTCTTATGTAATGTATGTGGCAAAGCTGTCTACTCTAAATCAGTATTGAAACAGCACCTAAGCAGACATGCAGATAAATTTGTTTGTCAGATTTGTGACCGGTCAATAGTAAAATTTCGTAAGCTTAAACACTTAAAATTGCACCTTGATAAACGTATGTATCAGTGCATGGAATGTGGTGAAAGTTTCTTTGATCGAGAGGCACTGAAGAAACATTCAGCAACACATTTTGTCACAGTTTTCCAATGTGAGATCTGTGGTTTCTGCTTCAGCTCACAACATAACCTAAGCATTCATCAAGGTTACCACAAAGATGCTGCTACTCAACAATATAAATGTCCAGTAAAATCATGTAAACAACAGTTTGCCACAATCAATGAGACTTCAAATCACTTTCACTCACATACCAGAGAACAAAAATTTACAATGGTACGAGTTTCAGCTGAGAAAGATAGgcaacgtaatttattctgctaTTATTGTGATATGGCTTTTCGTCACATGGGGATGTACCTTGATCATATGGCTGCACATCAAGGTGGTACTGAAGCGTCTGATGAGTTAGCATGCGCTATCTGTAAATTTGAAGTTGAAGATGAGGCATCACTGACATCACATCTGGAAACACATCCTCAGGCCTTTGATTTTCCTTGTAGACATTGTAAGGAGAATTTTGTCACTGATAAGCAGAGGGAGACTCATGAGGATATTAAACATGGTGGCAAGgtcCAATGCCCTATTTGTAAACTCACATTCCGAAACACTGCTCATTTGAATGAACACACCAATGCTGCTCACACTGGGTTGAGACCTTATGTTTGTAAAATATGTGGTAATGGATTCTTTTCCAGTAAAAATTTGGCAAAACATAAATCAGTTCATACAAATGAGAAACGATTTGCTTGTGAGATTTGTGATAGAGCTTTCAGATTAAAGCCAGATTTGAATAAACATGTATTAAGACATAATAATGAGAAAATGTATAACTGTAGCTCATGCTCTTATTCTACTAATAAGAGAAGAGAATTTGATTTACATATTGCATTCAAGCATGCACAAATGTGTGATGAAAACAGTGattga
- Protein Sequence
- MAGLFSDFNDQEDKSQYCRTCGQKSDEMVPIFEEEGFDRELAEKMNQCLPISVSERDWLPLQVCLRCVLWVETAHQLRNSCLTADKKLRGIFLEPPDSMLIDSDLEEDYGSSHFDNADYGSDNEQPAESSTSNKSPAQASEAKKEEISGGLRFLAAELGVQNPNSLLIVNKEPSQFDSLYLQMPAAKGVERPPFYCHICRENMNSRHTVRRHYWRNHKLDIFPCKICYVFFSKFDMLKDHIKTFHPKFQFRKLIGPTPEPQENWKKRKFVKVYEENKTTKTCRRCGEIFLADDVEAWKKHGMKHRRDEKLEKLKKSNIKCDYCENFFLSEVSKQCHMEFNHKEYKRYECEICQKKFRVKQFYKDHKLSHTSGPSFLCNVCGKAVYSKSVLKQHLSRHADKFVCQICDRSIVKFRKLKHLKLHLDKRMYQCMECGESFFDREALKKHSATHFVTVFQCEICGFCFSSQHNLSIHQGYHKDAATQQYKCPVKSCKQQFATINETSNHFHSHTREQKFTMVRVSAEKDRQRNLFCYYCDMAFRHMGMYLDHMAAHQGGTEASDELACAICKFEVEDEASLTSHLETHPQAFDFPCRHCKENFVTDKQRETHEDIKHGGKVQCPICKLTFRNTAHLNEHTNAAHTGLRPYVCKICGNGFFSSKNLAKHKSVHTNEKRFACEICDRAFRLKPDLNKHVLRHNNEKMYNCSSCSYSTNKRREFDLHIAFKHAQMCDENSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -