Etor010184.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439130.1:42657463-42663390[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.58 41 5.2 0.3 6 23 171 189 168 189 0.90 2 15 0.005 0.36 11.7 3.0 3 23 319 340 317 340 0.94 3 15 0.22 15 6.6 0.2 2 23 345 367 344 367 0.92 4 15 0.0021 0.15 12.9 3.1 2 23 371 393 370 393 0.97 5 15 0.0091 0.64 10.9 0.4 1 23 399 420 399 420 0.96 6 15 1.5e-06 0.00011 22.8 2.6 3 23 427 447 425 447 0.97 7 15 0.0012 0.082 13.7 0.7 1 23 484 506 484 506 0.99 8 15 0.0063 0.45 11.4 1.1 3 23 513 533 512 533 0.98 9 15 0.0018 0.13 13.1 2.9 1 23 583 605 583 605 0.99 10 15 1.9e-05 0.0013 19.4 0.6 1 23 615 637 615 637 0.98 11 15 0.21 15 6.6 2.5 1 23 649 671 649 671 0.93 12 15 0.017 1.2 10.1 0.2 2 23 678 700 677 700 0.95 13 15 2.2e-05 0.0015 19.2 2.1 1 23 721 743 721 743 0.98 14 15 0.00096 0.068 14.0 0.5 1 23 749 771 749 771 0.97 15 15 0.11 7.7 7.5 0.9 1 23 777 800 777 800 0.95
Sequence Information
- Coding Sequence
- ATGGAGGTTTGCGAGGAAGAAATCGGCATTCAACCCAGCAAAATGTCTAGTCTATGCCGTTTATGTGCTGAACCAAGCAATTTTATGATTGAAATTTTTGGAGATTCTAGCACTACGGAGAATGTTGCAGATAAAATAAGACATCATCTAGGCATATGTGTAAATCCAGGTGATCGTCTTCCTCAAGTAGTTTGTCACGGGTGCATTACGTGGCTGAAGTGGACCCATGAATTATTTCTTTGTGCTTCTAGAGCTGATAGAACTTTGCGTCAAATATTAGAGCAAGAAGATTTAACTAAACCAATTACTAAAACCAGTCACATCGAGCCTAGTCGTTCCGACACACCTGAGCAAAATGTCAGACACACTCGCTCTGCAACTGCACGTGCTAATGCTGAGAAGCTGCTTGAGCTTCAATGTTGGCAGTGTAACTCCGTGGCTGGTTCAGTGCCAAGTTTTATGCACCACCAGGCAACAGCACACAACAATCTGATTCACGGGTGTTTACCTTGCCGTGTGTTCTTCAGCTCCAAGGCGCAGATGCAAGCACATCAGTCAGAAGTGCACTCTTGGGAGAGTACATCACTGCAAGCTACAAAGAAGAAAGTACCTGTAGCATCAACATCTAAGAAGGCAACTACACCTACGAGCAAGCGTAAAACCAGACTGACAAAGAGAAATGTAGAGAGTgaagaggaggaggaagaagaagaggaggatGAATTTAACTTTGATGATGCTGGTAGCAATGATGAAGATTTAGATGTAAATAAAGAAGATGAAGGTCCTAGTACTAGTGGACAACAAGCATCAACTTGTCAACAAGTTATCATTGAAGGATCATCAGCTACAGTTGGAACTATTGATAAACCTCCAGGATATGAAGTTATAGCAAATCCACTTTACAAGAAAGTATATAGATACAAACATAAAAACTACTCACTTCctactttttgtaaaatttgtaatatagaatttaaaagtTATCATAGATTACAAAGACATCGTCAAGAAGAACATGAAGCTAAAATTAAGTGCAAGTTTTGTGAGGAAAGCTTCCAAGGTATGCCAGCTCTTCAACAACATGAAAATGAGAAACATAagaatattaaatgtaattattgtgAAGAACACTTCACAACTGATAGACTTAAAGAGCGTCATATGAGAAAAGAACATCGTGAGTATACACCATATATTTGTGAAGTATGTGGTAAAACTCTACGTCAAGATCAAAAATACTCCCACATGCTAATTCACATCAACGACAATTGTCTCTGTGATATTTGTGGAAAATCATTCAAATTTAAAGGTTATTTAAGGAGACATATGAGTGTACATTCTAATCGTAAACCAAAACCTACTTACGTTAAATGTACAGTATGCTCTAAAAATATCTTGAAACGTCGATTAGAATTTCATATGAATTATCATAATGGAGTTAGGCCATATCAATGTCTTGTATGCAGAAAAGAATTCTTTgctaaaaatagtttaattgcACATAAACGAATTCATAGTTCTGATACAGTAGATTGTGAAGTATGCAGTATTAcattgagaaataaaaaaagttatcttaATCATCTTAGGAAACATTATGATCCTGAAACCAAGAATTATCATTGTGCTGTATGCTTTGAAGCATTCCCTTCTATTGAGCAAATAGTTCAGCATTGTCAGTACCATTCTCGTGAAGAACTTCTTAAAGCTCAACTCTACAGAAATAGAAGAAGGAAGACAAACTATCAGTGTGATTTCTGCAGTAAATATcttgagaataaaaataaaatgaaaaatcacaTTAGAACTCATTTAAATCTTGGTCCAGAGGAGAAGAAATTCAAGTGTGAACTGTGCAATAAATCATATTCTTCATTCCCATACTTGGCTAACCATATGTTAGTACACgaagaagaaaacaaagaaaGAGATTCAAAATTCTATAAGTGTCAATATTGCGAGAGATTGTTTGAGAATCTTTATTCTAAAAATGTTCACGAGGCTCATCATTTAGATAGTAAAAGCATTGTATGTCAAATTTGTTCTCAAGAATATTTTACAGTTAAAGATCTaacaaatcatttaaaattagaaCATTTCTCTGAAGGTTTTGTTACTTATAATGAATATACTAATTTTGTTGGCTGTGGTTCACAGTATAAATGTAATatctgtaataaattatttagtaaaCTTAGATATCTAAAGAAACATTTAGAAATTCATGGAGGTGAGAAACGATTTGCTTGTGACATTTGTGGACGTAGATTCTTGATGAAATCTGACATGCAAAAGCACAGGCTGATTCATACCGGTGGCTACTTGTTTTACTGCAATAAATGTGACTTTGGGAGCAATAGGTTAAGAGACGTGCGTCAACACACTAATGAAGTGCATGTGACTGGAGCACAGCCTGCATATTAA
- Protein Sequence
- MEVCEEEIGIQPSKMSSLCRLCAEPSNFMIEIFGDSSTTENVADKIRHHLGICVNPGDRLPQVVCHGCITWLKWTHELFLCASRADRTLRQILEQEDLTKPITKTSHIEPSRSDTPEQNVRHTRSATARANAEKLLELQCWQCNSVAGSVPSFMHHQATAHNNLIHGCLPCRVFFSSKAQMQAHQSEVHSWESTSLQATKKKVPVASTSKKATTPTSKRKTRLTKRNVESEEEEEEEEEDEFNFDDAGSNDEDLDVNKEDEGPSTSGQQASTCQQVIIEGSSATVGTIDKPPGYEVIANPLYKKVYRYKHKNYSLPTFCKICNIEFKSYHRLQRHRQEEHEAKIKCKFCEESFQGMPALQQHENEKHKNIKCNYCEEHFTTDRLKERHMRKEHREYTPYICEVCGKTLRQDQKYSHMLIHINDNCLCDICGKSFKFKGYLRRHMSVHSNRKPKPTYVKCTVCSKNILKRRLEFHMNYHNGVRPYQCLVCRKEFFAKNSLIAHKRIHSSDTVDCEVCSITLRNKKSYLNHLRKHYDPETKNYHCAVCFEAFPSIEQIVQHCQYHSREELLKAQLYRNRRRKTNYQCDFCSKYLENKNKMKNHIRTHLNLGPEEKKFKCELCNKSYSSFPYLANHMLVHEEENKERDSKFYKCQYCERLFENLYSKNVHEAHHLDSKSIVCQICSQEYFTVKDLTNHLKLEHFSEGFVTYNEYTNFVGCGSQYKCNICNKLFSKLRYLKKHLEIHGGEKRFACDICGRRFLMKSDMQKHRLIHTGGYLFYCNKCDFGSNRLRDVRQHTNEVHVTGAQPAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -