Etor013541.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439132.1:16459789-16467181[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00018 0.013 16.3 2.9 1 23 190 213 190 213 0.98 2 14 0.042 3 8.8 4.2 1 23 228 251 228 251 0.93 3 14 0.069 4.9 8.2 0.5 1 23 286 309 286 309 0.97 4 14 0.0019 0.13 13.1 1.9 5 23 337 356 334 356 0.93 5 14 0.0023 0.16 12.8 0.2 2 23 360 381 360 381 0.96 6 14 2.6e-05 0.0018 18.9 1.0 1 23 416 438 416 438 0.98 7 14 0.0047 0.33 11.8 1.8 3 23 512 533 511 533 0.96 8 14 0.00089 0.063 14.1 1.1 1 23 539 563 539 563 0.99 9 14 9.9e-05 0.007 17.1 0.6 2 20 599 617 599 621 0.89 10 14 0.00088 0.062 14.1 1.8 1 23 627 650 627 650 0.98 11 14 0.0067 0.48 11.3 0.3 2 23 756 778 756 778 0.96 12 14 0.0047 0.33 11.8 0.0 1 23 784 806 784 806 0.94 13 14 0.0025 0.18 12.7 1.9 3 21 813 831 812 832 0.93 14 14 1.3 90 4.2 0.4 1 23 866 888 866 888 0.89
Sequence Information
- Coding Sequence
- ATGGACCGATATCGAAATGCTTGTCGCATTTGTATAAAAGAGGATGGCATTAAAATTCCCATTTTTGGAGAAGAAGGAGAATACAGAAGGGTTGCAACTAAAATTAAAGAATGCTTAAATATTCCTATATACCCAAATGACCCACTGCCAAAGCAAGTGTGCCATAAGTGTTACTACAAACTGGAACTTGCATCGGAAGTGAAGGAAATATGCCATAACACAAATGCCATTTTCATCCACCACTTAAAATCGACTCAACGTGGCCACTCTGCTGCTCGAGAGTATCTGTGTCGTGTAGAGGAGCAGTCTCAGCAAATGATTCCACCTCAACAAGTGCAAGGACAGAAGAGGAAgttGCCTGGAAGTTTTAACCCCGACTTAGGTGGAAGTGAACCAAATAGTAAACGGTCTATATTAGAGAGCCGACTGCAAGCACCTATTAACCCAATAAGGAGCTCTGCACCAACTCATGTGGCAGTTCTCCCAAGATCCGATGTGTTAAGTCGAACACGTTCTTCAGGTGCCTCTCCTCAAACACCACCACAGAAAACACCACAAGTGCAGATCTACcattgtaaagtatgtaataaaTCAGCGTCTTCAAGAAAAAATCTTTCACAACATGAACGTACAGAACACACCTTAGAGGAGTTTCAAGAATTAGGAATACCTCCTGGAACTTATGTCTGTAATATCTGCTACCGTCACTATGAAACagccaaaagtttaaaaatgcatAGTGCTAAGTGCCATGGTGTTAAATTGATAGATGTTACTCCCAGTGGTGAGTCAACAAGTTCTACTTCAAATTCACTATTGGGAATCAAAGTTGAACCAGCAGAAGAAGCTCCATCATTTGAATGTAGCATCTGCTATCAGATCTGTGCTGATGATAATGCATTGCAAGAACATTTCAGAATCAATCATAAGGATTTATCTTCACCCAATGCACCATCATTAACAGACTCTGAATCAGAGGATATACCTCTCACTAAACCACACTGCATTTATTGTTtccaaacatttaaaaataatagtggGCTTGTGAATCATCTTCGAACAGCTCATGGGAAGCCCAGTTGTCAAATATGTTTGGAAATATTTACAACTCAAGAAGAACTATTATCACATAGAAGTATTCATAAAAACATGATATCAGTTGTAAAAAATGTTGACACATCCCCTGCTAAGAAAAGTGAAGAGCAAGTACCGCCTGAAAATGTAAATCAAAGTCCTAACCAGTTGTACACTTGTGATAAATGTGGTAAGAGCTTCGACAAGTCAATCTCATATGCACGACACAGAGCATCTCACACTAGAAGAGGACCTTCTTGGGTACCACAAGATGTTTTAGTAGCCCAAGCCGCCGCTGCTGCTGCTTCAGCTCGACAATCAACATCAAGTACAGAAGTGAAGAAAAATTCTACAACAAATCAAACTCCCAAAGAAGTAAATGTGCCAGGTGCAGTAACACATGGTGGTGTTACTATATCTGCTAAAAAATTGCAACGTAATAGTTCTAATGTACCTTATTGTCTTTACTGTAAGAAAATTTATGAAAGTCATAGAAAATTATGGGAGCATATAAGAAAAGTTCATCCAAACAATCCACGTTATAAGTGTCCTCATAATATTTGTGGAAGAGTGTTCTTTGGTAAACCGGGATATAGAAGCCATTTGTCCactcataaaaatgataaacttCCAGATGTATCCAACATTGAAATTGAAGAAGTGGAGCAAAACATTTTGCCAAAATCTACTTTACCAGTAAGTGTTGATGGGAGTGAGCCTGAGTGTTTTGTTTGTAAGAAAATATTCTCCACCTGGAATAATTTACGTAGACATTTTGTGGAAGCTCACAAATCGACTCCATTTTTCAAGTGTGACCAATGTATAAAACTGTTCCGTACACAATTTCTTTTAAATCAACACATAAGGAAAGTGCATCCACATGTTCCTCTTCCAAATGAAAACCAGGAAATAGTACGAATTGAGAGACACAAAAAAATAGTTCAAGGAAATGTCAAAGTATATGTGTACCCCAAAGTCTTGTGTCGTTATTGCCCTAAATATCTGAGTAAGAAATATATATCTGAGCATGAAAAAGTTCATAGAAGAGTAGGAGCCAAGCCGATAGTAAGAAACGTGCCTGCAAATGCAACTGTCAGTAATGGTAATACAAGTGAAGTGCATGATGTTGAGGTGATCGTTGACTCGTCTCCTATTCCAAATCCAGATtctatgaagaagaaaaagaaggcaGTTTGTAAATATTGTGATTTAGTTTCTGATTCATTTGAATCTTTAAGAAATCATTTAACAACAATACATGCTGAAAACCCTTATTTCTTATGTGAGGAATGTCCTGAAGTTTACTATGATGCTACTGgcttaaaaattcatgtaaCTTCTCATAaaagaaattacaaaaattgtacCCATTGCAATCGTGCTTTTGCATATCATAGCTATTTGAAAGTACATGAGAAAAATTGTCCAGCTCTTAAAAAGCCAAAAAATGAAGCTCCAGCTTCCCTTTCTACTACTTCTGAGAATAAATCTAATAAGGCAGGAGAGTCCAGTACCCCAATATATACATGTGATTTCTGTGGAGCACAGTTCCTAGAAACCCAGTTGTTTGTAAAACATTTGCAAGGACATGCTGCTTCTGCATAA
- Protein Sequence
- MDRYRNACRICIKEDGIKIPIFGEEGEYRRVATKIKECLNIPIYPNDPLPKQVCHKCYYKLELASEVKEICHNTNAIFIHHLKSTQRGHSAAREYLCRVEEQSQQMIPPQQVQGQKRKLPGSFNPDLGGSEPNSKRSILESRLQAPINPIRSSAPTHVAVLPRSDVLSRTRSSGASPQTPPQKTPQVQIYHCKVCNKSASSRKNLSQHERTEHTLEEFQELGIPPGTYVCNICYRHYETAKSLKMHSAKCHGVKLIDVTPSGESTSSTSNSLLGIKVEPAEEAPSFECSICYQICADDNALQEHFRINHKDLSSPNAPSLTDSESEDIPLTKPHCIYCFQTFKNNSGLVNHLRTAHGKPSCQICLEIFTTQEELLSHRSIHKNMISVVKNVDTSPAKKSEEQVPPENVNQSPNQLYTCDKCGKSFDKSISYARHRASHTRRGPSWVPQDVLVAQAAAAAASARQSTSSTEVKKNSTTNQTPKEVNVPGAVTHGGVTISAKKLQRNSSNVPYCLYCKKIYESHRKLWEHIRKVHPNNPRYKCPHNICGRVFFGKPGYRSHLSTHKNDKLPDVSNIEIEEVEQNILPKSTLPVSVDGSEPECFVCKKIFSTWNNLRRHFVEAHKSTPFFKCDQCIKLFRTQFLLNQHIRKVHPHVPLPNENQEIVRIERHKKIVQGNVKVYVYPKVLCRYCPKYLSKKYISEHEKVHRRVGAKPIVRNVPANATVSNGNTSEVHDVEVIVDSSPIPNPDSMKKKKKAVCKYCDLVSDSFESLRNHLTTIHAENPYFLCEECPEVYYDATGLKIHVTSHKRNYKNCTHCNRAFAYHSYLKVHEKNCPALKKPKNEAPASLSTTSENKSNKAGESSTPIYTCDFCGAQFLETQLFVKHLQGHAASA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -