Etor012975.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- F56D1.1
- Assembly
- GCA_949318235.1
- Location
- OX439132.1:3758532-3775489[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.2 2.3e+02 2.9 0.5 1 12 23 34 23 37 0.87 2 17 2.7e-05 0.0019 18.9 0.4 2 23 69 91 68 91 0.96 3 17 0.32 23 6.1 1.1 2 20 99 117 98 119 0.90 4 17 0.00023 0.016 16.0 0.9 1 23 143 166 143 166 0.96 5 17 0.28 20 6.2 0.8 3 23 173 194 172 194 0.92 6 17 3.5e-06 0.00025 21.7 1.1 1 23 221 244 221 244 0.96 7 17 1.4e-05 0.001 19.8 2.6 1 23 270 293 270 293 0.97 8 17 0.0047 0.33 11.8 3.7 2 23 329 351 328 351 0.94 9 17 0.00022 0.016 16.0 1.0 2 23 359 381 358 381 0.93 10 17 2.6e-05 0.0019 18.9 2.2 1 23 402 425 402 425 0.97 11 17 4.8e-06 0.00034 21.3 3.2 1 23 480 503 480 503 0.94 12 17 1.7 1.2e+02 3.8 4.9 1 21 510 530 510 531 0.94 13 17 8 5.7e+02 1.7 1.2 1 21 550 570 550 571 0.84 14 17 7.5e-06 0.00053 20.6 3.3 1 23 624 647 624 647 0.97 15 17 6.1 4.3e+02 2.0 1.2 2 13 653 664 652 665 0.86 16 17 5.3e-05 0.0037 18.0 5.2 1 23 688 711 688 711 0.92 17 17 3.5 2.5e+02 2.8 4.8 1 23 718 741 718 741 0.96
Sequence Information
- Coding Sequence
- ATGTATACGAGCAAACGTTACGCGAAACGTCACGAACAAAATATTCACGGCAAAGACGCGGGACCTTTTACCTGCTTCATCTGCAAGTTGgtgtacaaaaatataaAAAATGAGTTGACAATCCGCCGTGTTTCTCGCTCGATGACTTCCGCTACACCAACAATGGTACCCACGGTCACAACAATGGAGCCGCTGAAACCTTGGACTTGTCGCGTGTGTGGCAATGTGTACAAGTCCAGCTTCAATCTCAGAGTCCACATGAGAAATATTCATGGACCGGACTCTCGACCTGTCACATGTCGACTTTGTGGTTCCGTGTACAAGAATTCTCATTCGTTACAATGTCATATCAGCGTGCCTCGTGGTTGGCGAGGTAACACGCACGTGCACGAGGTGTCATGCCCCACGTCAGGTAGCTCGCACGAGTACCCGTGCACCACGTGCGGCACCACGTACACATCGTTAGACAGATTAAACATCCACGTTCGCCACATTCACGAGACGTGTGAGGCGATGTGTGATATTTGTGGCTCAGTTCATAAGAATCCTAAGTCACTTCGTACCCACAAATATGTCGTGCATAGGGTTAGAGTTAGGGGTGGAACCTGGTGCTCTACCACAGTCAGTTTCACAAAGACCACGGTGTCCACCACCAAGCCCCACATGTGTCCTCAGTGTGACAAGTCTTACAATTCAGTTAGCAATCTCAATGCTCACAGGAGAAACATTCACGGTACCCAGGCTCAAAATGCGGGAGAATGTTGTGCGAGCTGCACCGAACCACCTGCTCCTCCCATTACTGCGTTATTTTCATGTTCTCAGTGTTCCAAAAGTTACAACAGAATGCGAAATCTTTCTCGTCATATGCGTAATATTCACGGCAAAGATGCTGGACCACATACATGTCCATATTGGTTGGTGTCACCGGTGACAACCGCGGGCGAGCTGGTCAGTGATGCTGCTGCGCTAAGTGCCACTCGATGGCCTTGCTGTTACTGTACCAAAGTGTTGACTTCGAGACATAATCTCCTGAGACACGAGAAAAACTTGCACGGAGAGGACGCGTTGCCCTCGACATGTCCGTTCTGCgccaaagtttataaaaataaagactcGTTGAGAACTCATATCtttcaaaatcataaaaatcaacAGTTTGTGATCCGCCGCGGTAGACGTCCCAAAGAAGGCGCCGTGTCAAGTTTCAAGTGCCCGCACTGCAACAATGCTTACACCCTGAGAAACAATCTCAATCGGCATATCAGAAATGAACACGGTGGAGGCGTTGGACCATTTCAATGTTCTGCTTGTAGGACGGTCTACAAAAATATGCTTTGTTTTAATTCTCATTTGAAACATTGTAACAGAGCGAGTTTGCCGTTCCtcattaGCACCGAGAGGCGAGGTCAGCGACCCCAGGCAGACGCGGTGCTCAGGTTCAAGTGCTCTCACTGTGACAAGGCATACACCAAGCAGAGCAACTTGAGCCGACACGTGACAAACGAACACGGCAAGAACGTGGGTCCATTCCAGTGTTCCTCGTGTCACAATGTTTACAAGAACTTTCGCTCGTACAAAACTCATTTCAAGTCGTCAGGATCTCAGGCGTACTGGCAACAATCAGGACCAACCCGTGACACGTGTCAGCACCAGTGCTGGTTCTGTGGCCGAAATAACACGTGTAAAGCTGACCTAGCGAAGCATGTTCgcTGGCTTGAATGGCATCCTGTTGACCCCAACAACATAATCAATCAACCAATAGATCCGATCAACATAATCAATCTGCCTATAAATCCGATCaatttcaacaacaacaacatcatcaacaacaacaacaactcgCAAAATGTTACAATGGTGGGAAAAAAGTTCCGCTGTCCTCACTGTGAACAGAAGTTCACACTTAGAGTGAACCTGCGTCGTCATATCCGCAACACGCACGAGGAATGTCCCAGCACTTGCCACATTTGTAACCTCAAGTGCAAGAACGCTCgcATTGCTGAGTGGCTAAGGTCAGAGGTCAAAGTTTTTGGAGGTCAACATGCTACTCCTTCTCCGGTGTTCAAGTGTAACTTTTGCTCCAAAATGTTCCGGAGAAAACAACATTTGCAACGTCACGAGGCGAACACCCACGGCGAGGACGTGGGGCCCTTCCCTTGCATGTTTTGCACTCAGTTGTGCAAGAATACTCGGACTTTGCAGTACCATATCAAGTACTATCATAACGCGCCCTCGCAATTTACACCTTAA
- Protein Sequence
- MYTSKRYAKRHEQNIHGKDAGPFTCFICKLVYKNIKNELTIRRVSRSMTSATPTMVPTVTTMEPLKPWTCRVCGNVYKSSFNLRVHMRNIHGPDSRPVTCRLCGSVYKNSHSLQCHISVPRGWRGNTHVHEVSCPTSGSSHEYPCTTCGTTYTSLDRLNIHVRHIHETCEAMCDICGSVHKNPKSLRTHKYVVHRVRVRGGTWCSTTVSFTKTTVSTTKPHMCPQCDKSYNSVSNLNAHRRNIHGTQAQNAGECCASCTEPPAPPITALFSCSQCSKSYNRMRNLSRHMRNIHGKDAGPHTCPYWLVSPVTTAGELVSDAAALSATRWPCCYCTKVLTSRHNLLRHEKNLHGEDALPSTCPFCAKVYKNKDSLRTHIFQNHKNQQFVIRRGRRPKEGAVSSFKCPHCNNAYTLRNNLNRHIRNEHGGGVGPFQCSACRTVYKNMLCFNSHLKHCNRASLPFLISTERRGQRPQADAVLRFKCSHCDKAYTKQSNLSRHVTNEHGKNVGPFQCSSCHNVYKNFRSYKTHFKSSGSQAYWQQSGPTRDTCQHQCWFCGRNNTCKADLAKHVRWLEWHPVDPNNIINQPIDPINIINLPINPINFNNNNIINNNNNSQNVTMVGKKFRCPHCEQKFTLRVNLRRHIRNTHEECPSTCHICNLKCKNARIAEWLRSEVKVFGGQHATPSPVFKCNFCSKMFRRKQHLQRHEANTHGEDVGPFPCMFCTQLCKNTRTLQYHIKYYHNAPSQFTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -