Etor003563.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439128.1:7553870-7555714[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.013 0.94 10.4 0.5 1 23 280 302 280 302 0.96 2 11 0.0025 0.18 12.7 0.5 2 23 307 330 307 330 0.90 3 11 0.0034 0.24 12.3 6.5 2 23 342 363 341 363 0.97 4 11 3.8e-05 0.0027 18.4 0.5 1 23 369 391 369 391 0.99 5 11 5.2e-05 0.0036 18.0 0.5 1 23 397 420 397 420 0.98 6 11 0.0002 0.014 16.1 2.0 1 23 426 449 426 449 0.97 7 11 8.9e-05 0.0063 17.3 3.3 1 23 459 481 459 481 0.98 8 11 7.9e-05 0.0056 17.4 6.0 1 23 491 513 491 513 0.98 9 11 0.00029 0.021 15.6 0.9 1 23 521 543 521 543 0.96 10 11 2.4e-05 0.0017 19.1 1.7 1 21 549 569 549 571 0.95 11 11 0.00029 0.021 15.6 1.7 1 23 577 600 577 600 0.97
Sequence Information
- Coding Sequence
- ATGGAAAATATCAACCACCTTTGTCGGACATGCGGAATGTCAACTCGCGAAGAATGCAGACAAAGTATTTTTGAGATTGAAggtagtttaaataaaataccattAAAATTAAGTATCCTACCAATTCAAATAACTCAAAGTGATCCTCTACCAAAAGTGATGTGTGATGCTTGTGTGTATAAGTTAGATATCACATATGACTTtatcatgaaaattaaaagCACTCAAAATCACTTTAATAACTTAATTCAGTATCAAGGCACAGTTATCAAAGTTGAGCCTGATATTTGTGCTTATTCCCAAGTAAATGGTACAGAACATTCTAGTGACTGTCAAATAGTTAATACACATACTGTAGAGAAAAACTCAATTAATTTCAAAGAGGAGTCTATAGAAGGAGTTAGATTTGGCACACATTTTCTCGGTGCTCAAAGACAAGTTCTGAGCCAACCTTACATTACTATGTACCATGCTGCTCATTCTTCCACAGCGCAAACAGAAGTACAGAAAGACATTCCAAATCACCCTCCTCCTGTATATGACATAGAACCAGACTCTGCAAATACATATCAAAGCCCGCCTGTAAATTCAGCAACACCccctttgttttatttatgtagATTTTGTCGTCTCCCATTTCCCTCACATGAAGCAGCTGATGAACACATTCATGAAGTACATAAGAAAGATGAAGAAGTTAAACTATTAAAAGAAAGTCAATTTGAAAGTTCTACAATATCTCAGAGAAATCCGTATAAATCAGAGACTGAAAATAAAGCATCAACGTCCAAGttgaaaaaatgtattaaagagAGCCCGGAATATGTCTCTTCATTTCATGCATGTACATCTTGTTATATTGTATTCCCTTCAATAGAATCTCTGAGTTTACACATGAAAAATCACAAATCTCTACCTGAATGTAAAATGTGTGGTGTTAAATTTACTTCCGATGAGAGTTTAGCTAATCATAAGAAGAAAGATGAACATACAGTTTGCAGTTTGCAAGAAAGTAAAATGTGGAGATGTAGTGAGTGTGGCAAGAAATGTAGGAAACGTTGTAAAATTCAAAACCACATGCGTGTTCATACAAAAGAAAGACCTTATACATGTAATTTTTGTCCTAAAGCATTTCCTATCAAAGCACAACTGACAATGCATGAGAGAAAACACAACAATGATTGGTgctatatttgtaattattgcgGTAAGGGTTTTTATGTCAAAGTTTACTTTGATAATCATGTTCGGACAGtacatacaaaagaaaaacCATTTAAATGTGACAAATGTGACTCGTGCTATGCATCAAAAGCAAGTTTAAAAGAACATATTATAAGTAAACATAATGATGGAACATTGCCAATCAAAATTTATGAATGTAAATCATGTgggaaaaaatttaaagataataatagtttatattatcacaataaaaCTCATGCAGCTACATTAGAAGAGAGAAGAAAACACAAATGTTTAGTGTGCAATGCTTCATTTGTCAAGAACCATTATTTAAGAAAACACATGAGAAAGCATACAGGAGAAAATATTGAGAGGTTTGAGTGTCACTTGTGTGGAAAAAAACTTGCGACATCTCATGGTTTAGAGTTGCATTTAGTGATACATTCTGGGGTGAAAAACtttatttgtgatttttgtGGCAAGGCTTTTGCTTCTGAGAGTACTTTGAAAACTCACATCCGCTGCCATACTGGGGAGAAGCCATATCAGTGCAGAGTCTGTTCTAACTTCTTCACTCAGCGTTCTTCTCTGCTCTCAcatcttaaaaatattcataacatTGATGACCGCatcagaaaaattaaatttaaccagaattaa
- Protein Sequence
- MENINHLCRTCGMSTREECRQSIFEIEGSLNKIPLKLSILPIQITQSDPLPKVMCDACVYKLDITYDFIMKIKSTQNHFNNLIQYQGTVIKVEPDICAYSQVNGTEHSSDCQIVNTHTVEKNSINFKEESIEGVRFGTHFLGAQRQVLSQPYITMYHAAHSSTAQTEVQKDIPNHPPPVYDIEPDSANTYQSPPVNSATPPLFYLCRFCRLPFPSHEAADEHIHEVHKKDEEVKLLKESQFESSTISQRNPYKSETENKASTSKLKKCIKESPEYVSSFHACTSCYIVFPSIESLSLHMKNHKSLPECKMCGVKFTSDESLANHKKKDEHTVCSLQESKMWRCSECGKKCRKRCKIQNHMRVHTKERPYTCNFCPKAFPIKAQLTMHERKHNNDWCYICNYCGKGFYVKVYFDNHVRTVHTKEKPFKCDKCDSCYASKASLKEHIISKHNDGTLPIKIYECKSCGKKFKDNNSLYYHNKTHAATLEERRKHKCLVCNASFVKNHYLRKHMRKHTGENIERFECHLCGKKLATSHGLELHLVIHSGVKNFICDFCGKAFASESTLKTHIRCHTGEKPYQCRVCSNFFTQRSSLLSHLKNIHNIDDRIRKIKFNQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -