Etor014714.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439132.1:41997281-42003429[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.016 1.2 10.1 1.6 1 20 197 216 197 218 0.95 2 17 0.0038 0.27 12.1 0.6 1 23 263 285 263 285 0.95 3 17 0.0043 0.3 12.0 0.1 2 23 294 315 293 315 0.97 4 17 0.017 1.2 10.1 0.1 2 20 319 337 318 338 0.95 5 17 0.016 1.1 10.2 0.2 2 23 347 369 347 369 0.94 6 17 1.2 82 4.3 0.4 1 23 473 495 473 495 0.97 7 17 0.56 39 5.3 2.5 3 23 502 522 501 522 0.98 8 17 0.73 51 4.9 0.1 2 23 530 554 529 554 0.86 9 17 0.0016 0.11 13.3 5.2 1 23 558 580 558 580 0.96 10 17 0.084 5.9 7.9 0.2 3 23 588 609 586 609 0.93 11 17 0.02 1.4 9.9 0.5 2 23 613 634 613 634 0.96 12 17 9.7e-07 6.9e-05 23.4 0.4 1 23 639 661 639 661 0.98 13 17 0.3 21 6.2 0.8 1 23 667 689 667 689 0.93 14 17 5.6e-06 0.00039 21.0 0.8 1 23 697 719 697 719 0.98 15 17 6.9e-06 0.00049 20.7 1.7 1 23 725 747 725 747 0.99 16 17 8.4e-07 5.9e-05 23.6 1.1 1 23 753 775 753 775 0.98 17 17 0.0031 0.22 12.4 3.8 1 23 781 804 781 804 0.96
Sequence Information
- Coding Sequence
- ATGAGTGAACAACAgGAAGATCACCAGTACACTGCTGGGAAACCTGCAAAGAAAACTACGGTAGCTCCTCGTAATAGAGGATTGTTTCAAGGACGTAGATGTTTTATCTGTAATGAGACTTTGCAAGGAAATACTTGTCAGTTAGCAAAGGCTGTCACTAAATTTTCAAGCACCCCATTCTCTGCCAGTTTAAACGATGTCATGGGACCAACGTTTGAAGTTACTGTTAATAAGAATGACAAgTCATGCCAACGCTGTGCATCTCTGATACAACAAAGAGACAAACTGGCTCTGGACTTAGAGGGCGTGAACAAAGCTCTACGAGGATTCCTCACTCGCAAGTACACCCTCCTGTCAATCACCAGTAAGCACGGCAATGCTTCAGATGTTGACCCCAACTGTATCAGACAAGTCGCAAAACTTGCAACACAGACAGAGCACCCTGCAGGAGTGAAGTTTGGTATGTGGACAGCAGGAGGCAGTCCTCAAATAGAAGTCACAAAGCCTTCTGGGAAATCCCCTCGAGGACAGGCCAAGGCTGTTGGGCGTGGCAAAAAAGCTCAGGCAGGTCAGAAAGCAATGCAACTTTACCAGTGTGTCGAGTGTCACAGTTCAACCACAGATCTATCAGAACTGAAGACTCATGTATGCAATAAATCAGTAAATATTGTTGTATCCAAACCTGCAGCTACAGTGGAAAAATCAAATGTAACAGCTGCACCCAGCAAAATGGGAAATCTAAAAATACTACAAACACTTTCATCAgacattaaaaaacaacaaacttttatttgtcGTTTTTGTGATTTAACTTTTGCAAGTAAAGCAGATTTTATTTCTCACAGTAAAGAACATATGTCTGAAGAACCTGAGTTATTAGAGTGTAAAATTTGTTCAGAAGTGTTCGCTTTGAGAGAAGAATTAGATGAGCATGAGAAAACACATGAACCAATAAAATGCACTTCATGCCTTGAATCTTTCTCCAATGTTGATAATCTTGCTGCACATTTAACCCCTACTTTGAAAATAAACACCAATCGTTGCAGTGCATGTAGTATCTCATTCCCTAATAAAGACGACTTTGCCAATCACGTGAGCAGTGTTCACCAGAGTGAAGGAGAACCCAACCTTGATCCACTACTTGTGATGAAGCTGACATATGTATGCACATGCTGCCAGAGTGAACTGGAAGATTACAAGGACTTCGGTAGACATAAGGAAGAACACATTGCAGACTGCATTGCTCAAGCCAAGGAGATGATGCAATTAGAGGTCAAGACAGAAACAGTAGAGGAAACAGAGCATGATTATGCGATGGAAATTAATCAGCCATCAACCTCTACAGCCACAGTGTCAATTgagagagaaaacaaagaaaataacacTGAAACCAATCGTGGACCCAAGAGAGCTGTTTTTGAATGTGGAATGTGTTCATTCAGAGCAGAATCAGTAGAAAAGTTGATGGATCATTTCAAGACACATAAATCTACTAAGATATTATGTAAACATTGTCATATTCAACTGCCAACTGTAAATGCCTTGTCTAAACATCTACAGTACCATACTCAGCCAGGCCAGGGAGTGGAGTGTCAGATCTGTTCTCCAACTGTCACATTGAAAAGTAAGGACATGTTGATGAGACACATGGCTGACTTACATAAACTTAAACACCACTGTCAGTATTGTGGAGAACAGTTTAGGTTCCAAAAAGAATTGGTTACACATCAAAATCAACATCCAGAGTCAAAGAAATATGGTTGTGTAAAATGCGGTATGAGATTTTTACAAGTTAATCAATTACAACGTCATATAGAATTACAACATAGAGATCCAAAATGTAGAGTATGCAGTAAAGTGATTCGTAATCCAGTAAAATTACGTCAACACGAAGCACGACATCGTAATGAGAAATATTCTTGCAATAAATGTGAGAGGATTTTCAAAACTCCAAGTGGACTTAAAAATCACATGGCAGTTCACACTGGCGAATATAAATATCGTTGTGATACTTGTGAACGTGGGTTCATGAATAGAAACATATTTATTGAACATACCAACAATCATTTAGAAAATCCTAAGCCATTGTATAAGTGTAATATATGTGGAAAGAACTTCTTCTATCAAGGATCATTATGGATTCATCGAAAGTGGCATAACAATCCTTATCCTTACGAGTGTAAATTGTGTGGTAAGAAACTTCGGCATGCTTCCGTGTTACAAGTTCACATGAGAAAACATCGTGGAGAGCGACCTTACAAATGTCCCTACTGCCCTATGACGTTCAATTCTGCAAGTACGTTTAAGCGTCATCTCATGCTACATACTGGAGAATACACATACAAGTGTGAGGACTGTAACAAAGGATTCACCGGCAAGAACAAATACTTCATGCATCGACATTCCATACATGGAGATCCATTACCTAAGAAACCAATCATGACAGCAATGGACTTCAAAGTGAATGTGCCAGTGCAACATGCTGACCCTCTAAGTAATCACCCAACTGCGTACATTGTAGAGAACATGGGGACTGAGTCAGGCAATGAAGAGGATGCGGTTCCCAGAGTAGTGGAGGTCGTCATTAATGAGGAGCAGCGTGCAGTGTCATCAATCACACTACTAGGGGAGCCTTTGAGGTGGCCGGAAGCTACCACCAGTACACAATCTTAG
- Protein Sequence
- MSEQQEDHQYTAGKPAKKTTVAPRNRGLFQGRRCFICNETLQGNTCQLAKAVTKFSSTPFSASLNDVMGPTFEVTVNKNDKSCQRCASLIQQRDKLALDLEGVNKALRGFLTRKYTLLSITSKHGNASDVDPNCIRQVAKLATQTEHPAGVKFGMWTAGGSPQIEVTKPSGKSPRGQAKAVGRGKKAQAGQKAMQLYQCVECHSSTTDLSELKTHVCNKSVNIVVSKPAATVEKSNVTAAPSKMGNLKILQTLSSDIKKQQTFICRFCDLTFASKADFISHSKEHMSEEPELLECKICSEVFALREELDEHEKTHEPIKCTSCLESFSNVDNLAAHLTPTLKINTNRCSACSISFPNKDDFANHVSSVHQSEGEPNLDPLLVMKLTYVCTCCQSELEDYKDFGRHKEEHIADCIAQAKEMMQLEVKTETVEETEHDYAMEINQPSTSTATVSIERENKENNTETNRGPKRAVFECGMCSFRAESVEKLMDHFKTHKSTKILCKHCHIQLPTVNALSKHLQYHTQPGQGVECQICSPTVTLKSKDMLMRHMADLHKLKHHCQYCGEQFRFQKELVTHQNQHPESKKYGCVKCGMRFLQVNQLQRHIELQHRDPKCRVCSKVIRNPVKLRQHEARHRNEKYSCNKCERIFKTPSGLKNHMAVHTGEYKYRCDTCERGFMNRNIFIEHTNNHLENPKPLYKCNICGKNFFYQGSLWIHRKWHNNPYPYECKLCGKKLRHASVLQVHMRKHRGERPYKCPYCPMTFNSASTFKRHLMLHTGEYTYKCEDCNKGFTGKNKYFMHRHSIHGDPLPKKPIMTAMDFKVNVPVQHADPLSNHPTAYIVENMGTESGNEEDAVPRVVEVVINEEQRAVSSITLLGEPLRWPEATTSTQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -