Etor003848.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439128.1:12336713-12341809[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00013 0.0092 16.7 2.0 1 23 421 443 421 443 0.98 2 10 0.012 0.86 10.5 2.0 1 23 451 473 451 473 0.97 3 10 5.2e-07 3.6e-05 24.3 1.5 2 23 514 536 513 536 0.96 4 10 0.00018 0.013 16.3 0.4 3 23 626 647 624 647 0.94 5 10 2.5e-05 0.0018 19.0 1.9 2 23 685 706 684 706 0.97 6 10 1.8e-06 0.00013 22.5 0.5 1 23 712 734 712 734 0.98 7 10 0.00026 0.019 15.8 2.9 1 19 740 758 740 763 0.91 8 10 1.1e-07 8e-06 26.4 0.7 1 23 769 791 769 791 0.99 9 10 3.4e-06 0.00024 21.7 2.9 1 23 797 819 797 819 0.99 10 10 5e-07 3.5e-05 24.3 1.1 1 23 825 847 825 847 0.97
Sequence Information
- Coding Sequence
- ATGAGGTGGAGTAAAAAACTGGAAACGGAGTCATCAGATAGACCCCAACGTCAAGGAGTGTTGATGGACAATTTAGAAATAAGTTCTCAAGTGCGAAGTGAAGTAGTCAAAATGACATCTCatgaaacagaaaataaaagtgaaagtgTGTTAAAAACTCATGAAGGCGAGTTGGTGGAGGGTGATCCTGGATCACAACATGAGATAGTGATGAACTCACAATATTTAGAACTAGAACGAGCAGAGGCTGAGGGACACCCGCCTGGCACTCAGGTAGTCAAAGTATCCGCTAATGGTCTCGTATCATGTGAAATGCTGCAACATGTAGGGGGTATCGACAGTGACCAACACCACGGCTTGGTTGTTCATGTGTTGCCCCCTAACTCGGACTTAAAAGAAGCTTACTATACACCAGTCACAACAGCACAGCAACTGCACAGAACCAGCACAATTATGACAGAAGAGCGGTATTTAACTGAGCAGTTGAGTTCTCAGCATTATGAGGATGATTTGCTGGCACATGACTTGACTGACGATGACCGCAGATTGGCAGCTGCACTCATGGCAGTTCAGTATGCACAACAGCAAAAACAGCAGCAACAGCTTAACAAGACACTGCTGGAGCCAGGCAGTATTGTGTGTACTAGTGCAGCTGAGGCTAACGTAATCATGAGCGTGAGTGACAGTATGCAGGGGCTGATTGCAACCAACCAGCTTGGTAAGGTGGTAACAGACCCTACACAGGGCAGCATGAGTGACATGGTGGTTGAGTATATTCAGCAAGTAGAGGGCACAGCACATGACCCAACGCGAAAGCAGATGAGACTGCTTACATATCATCCTGACACTCATACCTTGCATGCTCCAGAGACATCACAGCTGCACACCCTTGAGGAAGCACCTCATCTTGAAAGTCAGCAGCTGAAAACTATAACTCACGCACCTCCAATCCTGAAGAAGGCATTGTCTAGCCAGATGTCTCCTCGGGCCAAATACAAGCGCTTGATGGAGCTTGAAGAAGAGCAACATGCTGGGATGCAGGGACTTCCCACAGAAGTAGGCCACCAAGTTGAAGCCCAAGGCTCGCACATCAAACACGAGGATGATGATGACCCAGACTTTGAGTCCGAAGATGACCCAGATGACTCAGAGTATGACATAGAAAGTGATGCTCGTTCCTCTAGAAGAAGTTTACCTCATAAAAAACGCATACCACGTAAGTTAAAAAACCCCAAGAAATCGCCAGGACAAGAGAAAGTGTTCAAGTGTAACAAGTGTGAAGAAACATTCCAGACACAAGTTGCATTGACAAATCACAAGAAAAATCACCAGAACATCACCAATAAATTATATCACTGTGAACTTTGTGCCAAGAGTTTTGCAAACCAACTCAAGTTCTTTGAACACTTGAAAGCTCACTACGAGCCTGCCAAGAATTCCATAAAGGAAGATGAAATAGGCAAGGAATCCTCAGTAAGACCTGAATCTCACCCAACAGTGATTGTCCAGGATATGCCTCCTGCCTTGCCACCACCACTCACCTGTACGCACTGCGGCAAAGTTTTCAGACGTCAGAAAGCCCTTGAGACTCACATTACCACTGCACATGCACAGGTTGAGGAGGAGctggaagaggaggaggaggatgGCATGATGGAAAGTGGCGAGCTCATGTCTGAGGAGCTGCATGAGGATGACACACTTAAGAAGGGTGAATGGTTCACACATCATCAGTTGACTGCAGTAGAGCCTGTCCCAGTTCAAGATCAGCAGCTGATTTCGCACAAATTAGAGGATGAGGGTGCACCTGTGCTCACAGAGATAACGGTGGCCGAGCTACCACCAGTCACAGAAGAATATCAGTCGCACCACTTGTGTGACCTGTGTGGGGAGGGCTTTGAGCTCAAGTCTCAGCTCACACTGCATATGCGTGAGGAGCATCCTGAGCTGAAGAAGAAGACACGTGGCAAGAAAGATCCTATGGCGGCCACTCTTGTCAGCGCTGTCACCTCGTCAGGTAGCGAGCGAGGCAACAAAAAATGGGAGCAGCTGACGTGTCCAACATGTGGCCGCATGTTTAATCACCGCAACTCATTGGTGTACCACTTGCGCAGCCACACTGGAGAACGGCCTCACCAGTGTGAGGTGTGTGGCAAAAGCTTCTTTGCCGCAAGTGCTCTCAAAGTTCATATGCGTCTGCACTCGGGTGACAAGCCATACAAGTGTGAGCTCTGTGGTCGTCACTTCCGTCAATGGGGCGACCTCAAGTATCACTGCATCTCAATCCATACTGATGAGAAGCAATACCAGTGCGAGTACTGTGGCAAGGACTTTGCACGCAAGTACAGTCTCATTGTTCACCGCAGAATCCACACGGGCGAGAAGAACTATAAGTGTGAGTTCTGTAATAAGACGTTCCGTGCCTCCAGCTACTTGCAAAACCATCGCCGCATTCACACAGgAGAAAAACCACACCCCTGCGATGTATGTGGCAAGCCATTCCGTGTGCGTTCAGATATGAAACGCCACATGCAAACACACAATCGTGAAGGTCATGCTGCCTCCTCATCCACTCCAAGTGCTGCTAATGCGGGTAACAGCCAGTCCTCACACAGTAGCAGCCAGGGTACAGAGCTCTCGCATTCTCAGCTACCAGACCTTGATCCTGTTGCTGCTGAAATTACAATTCAAGATGGCTCAGTATCCGTCATAACAGAGGACAGTCTAGCATCACAGCCTATGAACCTCAACATCGCGGTGCCTGCAAATGAACGGGCGGAGGGCAGTGCACAAGATGGTGCTGGAGGTGAGCAACAACTAGCAGTTGAAGAGGTCACAGAAGAGGTCATGCAGTACTCCAGAGATCCGCTTGAGACAGTGAGAGACAGTGGAGGAAACACCCTACTTGTGTGGCCAATATACATGGCTTAA
- Protein Sequence
- MRWSKKLETESSDRPQRQGVLMDNLEISSQVRSEVVKMTSHETENKSESVLKTHEGELVEGDPGSQHEIVMNSQYLELERAEAEGHPPGTQVVKVSANGLVSCEMLQHVGGIDSDQHHGLVVHVLPPNSDLKEAYYTPVTTAQQLHRTSTIMTEERYLTEQLSSQHYEDDLLAHDLTDDDRRLAAALMAVQYAQQQKQQQQLNKTLLEPGSIVCTSAAEANVIMSVSDSMQGLIATNQLGKVVTDPTQGSMSDMVVEYIQQVEGTAHDPTRKQMRLLTYHPDTHTLHAPETSQLHTLEEAPHLESQQLKTITHAPPILKKALSSQMSPRAKYKRLMELEEEQHAGMQGLPTEVGHQVEAQGSHIKHEDDDDPDFESEDDPDDSEYDIESDARSSRRSLPHKKRIPRKLKNPKKSPGQEKVFKCNKCEETFQTQVALTNHKKNHQNITNKLYHCELCAKSFANQLKFFEHLKAHYEPAKNSIKEDEIGKESSVRPESHPTVIVQDMPPALPPPLTCTHCGKVFRRQKALETHITTAHAQVEEELEEEEEDGMMESGELMSEELHEDDTLKKGEWFTHHQLTAVEPVPVQDQQLISHKLEDEGAPVLTEITVAELPPVTEEYQSHHLCDLCGEGFELKSQLTLHMREEHPELKKKTRGKKDPMAATLVSAVTSSGSERGNKKWEQLTCPTCGRMFNHRNSLVYHLRSHTGERPHQCEVCGKSFFAASALKVHMRLHSGDKPYKCELCGRHFRQWGDLKYHCISIHTDEKQYQCEYCGKDFARKYSLIVHRRIHTGEKNYKCEFCNKTFRASSYLQNHRRIHTGEKPHPCDVCGKPFRVRSDMKRHMQTHNREGHAASSSTPSAANAGNSQSSHSSSQGTELSHSQLPDLDPVAAEITIQDGSVSVITEDSLASQPMNLNIAVPANERAEGSAQDGAGGEQQLAVEEVTEEVMQYSRDPLETVRDSGGNTLLVWPIYMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -