Etor019287.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439135.1:24104825-24118567[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.042 3 8.8 3.3 1 23 167 189 167 189 0.98 2 14 5e-05 0.0035 18.0 0.8 2 23 196 217 195 217 0.97 3 14 3.8e-05 0.0027 18.4 0.6 1 23 223 246 223 246 0.97 4 14 0.0034 0.24 12.3 4.8 1 23 252 274 252 274 0.98 5 14 1.3e-05 0.00089 19.9 3.4 3 23 282 302 281 302 0.97 6 14 0.00076 0.053 14.3 0.1 1 22 308 329 308 331 0.90 7 14 1.3e-05 0.00092 19.9 0.4 1 23 342 365 342 365 0.97 8 14 0.0008 0.056 14.3 0.1 1 23 383 406 383 406 0.91 9 14 0.007 0.5 11.3 2.2 1 20 412 431 412 436 0.89 10 14 1.4e-06 0.0001 22.9 1.2 1 23 620 642 620 642 0.95 11 14 0.00052 0.036 14.8 1.7 1 23 649 672 649 672 0.98 12 14 0.00059 0.042 14.7 1.8 1 23 710 732 710 732 0.97 13 14 3e-05 0.0021 18.7 1.7 1 23 738 760 738 760 0.98 14 14 5.4e-07 3.8e-05 24.2 1.9 1 23 766 788 766 788 0.99
Sequence Information
- Coding Sequence
- ATGCCAGTTGTTGAAAATGatgaacaaaataatgaaaatattaattctgATGATGTTTCTCCTGTTGCTCTTATTCATGATGCATTAGgGAACGTAACGACACTTGACGCCACTCAACAAGGTAACATTCCAGTGACCTGGCTAGGATGTGGCAACAATTCTCAAGAACAACTTCTCTACGTCACATATGTGGGAGATGCTGCTTCAGGGGGAGGTGTACAGCCTATGTTGTTACAGGTTGCTCCTTCAGGTGACAATGAAGAATATTTCTCTCAGGAGAAGCTAGGggaggaagaggaggaggaagaagaagaagaggatgATCCGGAGCAAGCTAACAATGCAAAAACTCCTAAAAAAGAACACACCAATACGTGGCAGACCATCGCTGACGACGTCCACATAGAGACCAAGCTCCAGGTGTTGGATGCCATGTTACCTCCCCTGCCTAAAGTAGCACCGTATCGTAGAAGTGACGACGACGATGGAGAAGCCCTGTATAAATGTGACCTGTGTCACGCTGCGTTCTCCAAGGCACAACAGTACTACGGTCACTTACATTCCCACACGGGGGAGAGATTGTGGAAGTGTGATATATGTTCTCTCATATTTGCTACTCACTCATTGTTAAGGAGACATGAAAGGATTCATGCAAACTTGAGGCCTTTCATATGTAACTTGTGTGGATTAAAGTTtgatagagaatctcagttacAGTATCATGAGAGAAGAATACATTTAGAGGAACGATCACATCAATGTCAGTTTTGTATGAAAAGTTTTTTCAAGCGTAGTGATTTAAGAAATCATCTCAACATTCATCTCGGTATtcgtaaaaatatttgtgagaCTTGTGGACGTCAGTTTAATCATAGATCTAATCTGAAGAGACATTCCAGGATACATACAGGTATCAAGCCTTACGTGTGCAACATATGTGGTCTGAGGTTCGTCCAAGTAAACGCCCTGAATGCTCACAAGGTCCAGCAACACCCAGCACTGGGACCTGAGGGATACCCTAGCTTTGAGTGTGGGCATTGTGGCAAAGTTCTCAGGTCACTACCCTTGCTCAAGAGACATATCAAGATTTTACATGGCTTGGAAGTTAGACAGGAACCTGTTGTGGGACATTCCAAGATCCGCCAGTACTACTGCCAGATATGTGGAGTCAGTTTTCCATTTGCTGCCTTACTTCAACAGCATGAGATTGAGAGTCATGCCAATCAAGATAACTTCCTGTGTAGAAACTGTGGTCAGAGTTTCAACAAATCTGAAGATTTAAAATCACATTCCTGTGGTGCTAACCATGTCGCTAAAGACAGCGaagatttattaaaatgtgATCCTAAGAATCGTGGTGAATCTGACACAGCACTTCAGTTAGAAACATTGATAGATCAAACATTATTAGATTGTTTAAATACACCTAGCAACAATGATTTAGCAACAACAAACGAAGGCAAcgacttaaataaaaaagacaacGAGAGCGAGATGGTGATATATATAAGAACAGAGGGTCAAGATGAACCCACAGCTGTCACAATCAAATATGGCAATAATTTTAACCAAGAAACACCTAATATTGAAATCAATGAAAATAGTCAATTGCCAGAAATCAATTTTCCAATACCAACAGATAACGTTAACGATGATAATTCTAGATTTTCTTTATTAAGTGTCGCAAGTTCTACATCTAAAAGTCTATCAGATAATTTAGTGGTTTCTAAAGAGGAAATGGATGCTATTGATGCACAAAAAGCTGAAGAATTGGTAGATTCTATTTTGGAAAGAGAACCAATTAAATTAGATAATGATCCTCTGGAACTGCCTGTTGTTGTTAAGCAGAAGAAATTGTTTGAATGTAAAGAATGtggcaaagtttttaataagaAGAGTAATTATACTCAGCATTTAGGCTTGCACAACGTAGATCAGAGAAAATACAAGTGCAGCCACTGTGGGAGCACGTATGCATGGAAGAGCTCACTTAATAAACATCTGCAATCTGCTCATGGAGTGAATGTGGACCCAAGTAAGATCCAGTGTACCCAATGTACTAAACATTTCCTCAATGGAACTGTCTACCATGAGCATTTAAAGCGAGATCATCTTAAAGAAAGAAATCACATTTGTCCAGATTGTTGTAAAGCATTCTATAAGAAGGCTGACCTCATGGTGCATTTAAGGATCCACACAAAGGAGAAGCCTTACATGTGCGGCACGTGTGGCAAAGCTTTCTCCCACGTCTCCCACATCATCAGGCACGAGAGAATACACAACGGAATCAGACCTTACACCTGCGAGGTCTGCGGCAAAGGATTCACTCAGTCCACCACCCTCAAAAATCACAGAAAGCGACATTTAGAACCCAAGATACCTAAGATTAAAGCCACCAAAACACCAAGAACAAGTAAAGCTAAGACCCAAGGTAAAATAACCAGTCAACAACCTGAAGTGATCCTCGGGATTCAGTCGGATCATCCCTCGACTGTAGATCTGCAGATCTGGAATGCAGCTTAA
- Protein Sequence
- MPVVENDEQNNENINSDDVSPVALIHDALGNVTTLDATQQGNIPVTWLGCGNNSQEQLLYVTYVGDAASGGGVQPMLLQVAPSGDNEEYFSQEKLGEEEEEEEEEEDDPEQANNAKTPKKEHTNTWQTIADDVHIETKLQVLDAMLPPLPKVAPYRRSDDDDGEALYKCDLCHAAFSKAQQYYGHLHSHTGERLWKCDICSLIFATHSLLRRHERIHANLRPFICNLCGLKFDRESQLQYHERRIHLEERSHQCQFCMKSFFKRSDLRNHLNIHLGIRKNICETCGRQFNHRSNLKRHSRIHTGIKPYVCNICGLRFVQVNALNAHKVQQHPALGPEGYPSFECGHCGKVLRSLPLLKRHIKILHGLEVRQEPVVGHSKIRQYYCQICGVSFPFAALLQQHEIESHANQDNFLCRNCGQSFNKSEDLKSHSCGANHVAKDSEDLLKCDPKNRGESDTALQLETLIDQTLLDCLNTPSNNDLATTNEGNDLNKKDNESEMVIYIRTEGQDEPTAVTIKYGNNFNQETPNIEINENSQLPEINFPIPTDNVNDDNSRFSLLSVASSTSKSLSDNLVVSKEEMDAIDAQKAEELVDSILEREPIKLDNDPLELPVVVKQKKLFECKECGKVFNKKSNYTQHLGLHNVDQRKYKCSHCGSTYAWKSSLNKHLQSAHGVNVDPSKIQCTQCTKHFLNGTVYHEHLKRDHLKERNHICPDCCKAFYKKADLMVHLRIHTKEKPYMCGTCGKAFSHVSHIIRHERIHNGIRPYTCEVCGKGFTQSTTLKNHRKRHLEPKIPKIKATKTPRTSKAKTQGKITSQQPEVILGIQSDHPSTVDLQIWNAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -