Etor003981.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439128.1:14496811-14517454[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00041 0.029 15.2 1.5 2 23 306 327 306 327 0.95 2 13 0.0085 0.6 11.0 0.2 1 21 331 351 331 355 0.91 3 13 1.3e-05 0.0009 19.9 0.3 1 23 413 436 413 436 0.93 4 13 4.8e-05 0.0034 18.1 0.2 1 23 442 465 442 465 0.95 5 13 0.01 0.71 10.8 1.3 2 23 487 509 486 509 0.92 6 13 2.2e-07 1.6e-05 25.5 3.5 1 23 515 537 515 537 0.98 7 13 3.6e-05 0.0025 18.5 0.5 1 23 543 565 543 565 0.92 8 13 0.00017 0.012 16.4 2.4 1 23 571 593 571 593 0.97 9 13 1.3e-08 9.2e-07 29.3 0.6 1 23 599 621 599 621 0.99 10 13 8e-06 0.00056 20.5 4.3 1 23 627 649 627 649 0.97 11 13 0.61 43 5.2 4.4 2 23 656 677 655 677 0.95 12 13 2.2e-05 0.0015 19.2 0.6 1 23 683 705 683 705 0.98 13 13 4.1e-07 2.9e-05 24.6 3.2 1 23 711 733 711 733 0.98
Sequence Information
- Coding Sequence
- ATGGGAGAATTGTTGTACGATTCTCATTACTGCCGtctttgtgctgaaaataattcaaatggAGAATTCTTATATTCTTCAGAAGATCCTGAGGGTGATCTCAGTACATTAGTAAACCGATATTTACCATTAAATGTCAAAGATGATGGAAAGTTACCCAGAACCATCTGCCCAGGCTGTAGTTTCCAACTGCAGACAACTGTACAATTTTTTGAACGTCTTATTGAAGGGCAGAAAAAAATACGAGAGCTATGGAAAGAACagGTTGAAGCTGAGAgagggaagaagaaaaaagttgagGAGACGGGTGTGCCAACTGAGATTGAAATACAAGCCACAAGAATCCAAGGAGAAGATGGCAATATTTATATGATGATAACTGTGCCTACAGACAAAGGTGAGTTGATGTACACTGATGACAATCAACTTGCACTCCGTATGGAAGGTTTAGAAAAACCACGACGCAAGAGAGGTCGACCACCTAAGCCCAAAGTATCCACTGAGTTTGTTGACATGGATTCATCACCTATAGACCCTGTTGAAGCCACGGAAGCTGAGCAAGCAGAAGAGGAATTGGAAGATGGAACAAGAGGAAGGAGAAGACGTAGGAAGATTCCATCAAGGTATCTAGAATCAGTTGCTGGTTCTGAAATGGATAGAATATTCCGGGAGCAAGGAGTAATAGATCCTGAAGAAGAAGATATCATGGAGGAAGAAGAGCAAGATGAGGTGGCCAGTATTCGAAGTCCTGGAATCCAGAAAGAAGCAAAGGAGGTGATAGGTCATATGGAGACACCAGAAGGTCAAGACCTTGGTCAGCTTGTTGTTATATCAAAGTCCAGAGGTAGAGGGGGTGGAGCTGGAACAACCTCCAGAATAAGTAATAGAGGACGTAAGAAAATCGGTGCCATGGCTACGTGTGACGTTTGTGGACAAACTTTCCCTAACAGGAGTAAACTTCACTTGCATAGGCTTGACCACAAGTGGAACTTTGAGTGTTCCACATGCAGGGAAAAATTTCCTGACAAAGTATCTCTAGACTCTCACCAAGCAAATCTTGGCCATGAAGGAATGATGGTTCATGAGGATAAATCAGAAAATACATTATCtcaagATGCTGCTGATGTAGCTGCAGAGCTGTTGGAGGCTGAGAGAAGAGCTGAGGAAGCAGAGATAGAGGAAGAAGAGATTGAAGAAGGGAGAGTTACGGAGGAAGACATAGGGAATATCCAAGTTTTCACATGTCCAGACTGTAGCAGATCATTCATCTCAAAAGAAAATCTGGAGGACCATAACAAAGCTGTTCATCAAGGACTTAAACCTTACAGCTGCAGTATTTGTGAGAAGGCTTTTGCATATCCAAACAGCTTAAAGAATCATGTGGCATCATTTCATGAAGATAAGACAGAACTAAAAAATGGAGAAACTGATCCCTTAAATAAGTCAGGAGCTGGCTGCACGTGTGACATTTGTGGCAAAGTGCTCAATCACCCCAGTTCCGTTGTATACCATAAGGAGTCCGAACATAATGATGGCCGTcgttatgtatgtaataaatgtGGCAAATCTTTCAAACATAAGCAACTACTGCAAAGACATCAACTTGTACACTCGGAAGAAcgACCTTATGTGTGTACAACTTGCAATGCAAGCTTCAAGACTAAAGCCAATTTAATGAACCACTTGCCAACCCACACTGGGGAAAAGAAATATTTCTGTGACTTGTGTGGTCAGCAATTTGCTCACAAAACAAGTCTTACTCTACATTATCGTTGGCATACTGGTGAAAAACCATTCCAATGCAAGGTTTGTGGTAAAAACTTCTCTCAAAATGGCAATCTCATGGAACACATGAGAATACACACTGGCGAAAAGCCTTTCTTCTGTAACTTCTGTGGTCGTCGCTTCACCACGTCCTCTCAGTTTAAACTTCACATTAAAAGACATACTGGAGAGCGACCTTGGAAATGTGAGTTCTGTGGCAAAGCTTTTCTGCACAAGGATACTTGGAAATGCCATGTAAGGAGACACCGAGGTGAGCGTCCTTATTCTTGCGAGTTCTGCCAACGAGGCTTCACTGAGCAGTGGGCACTGAAGAAACATCTAAGAATTCACACGGGAGAAAAGCCATATACCTGTGACATTTGTAACAAGGCCTTCTCAGACTGCTCCAATCTGACAAAACACAAGAAGGTCCACCGTGGTGGTTCCCAGGATATGAAGGATGATGATGGTGAAGGTGTGGTGTGGCAGTTGGTGCAAACAGAGGGTGAAGGTGAAGAAGGAGATGAGCAAACTCAGCACATCATCTATGTCACCTACCAGGGAGAAGAAGGAGAAGAGGGAGAAGGCAGCACTGCCACAGAGGAAGCACCAAATTTCCAGATGTTGCAGCAGCTTGCTCAGGAGAGgtgtttaggcttgacaggcCTAGTTATGCCTCTACCCAGTCCTGGCAATGGTGGTAGTCGCCCTCAGGGAAACAATAGTCTTGTACTTGGAACTTCAGATGGTGAAGAAGTAATTCTAAACACTTTAGGTGGAAGTCTTCCCATGGTTGTTTCCTCAGAAGCACCAATTCAGTTATCTGGCCCTGGATCCAACACTGGTACATTACAAGTTGCATCTGCAGATGGTGGCATGAGTATGCCAGTCACTTTGACTATGGAAGATGGACAGCTAGTAGCTCATATCCCATCAGGCACCCAGTTCCTTTCAGAAAAGGAGGATGTTGGAGACAAAGTTGAGGAACAAATTACAACTCGAGAGCAAGGTGAAGAAGTAGAAGCAGGAGAGGAAAATATGCAAATACAACTAGTAACTGAGGATGGTCGAGCAGTACAGTTGATATCCACCCCAAGTGATGAAGCTGGAGCATTCAGCATCAACTTTGGAGATGCCTCGTAA
- Protein Sequence
- MGELLYDSHYCRLCAENNSNGEFLYSSEDPEGDLSTLVNRYLPLNVKDDGKLPRTICPGCSFQLQTTVQFFERLIEGQKKIRELWKEQVEAERGKKKKVEETGVPTEIEIQATRIQGEDGNIYMMITVPTDKGELMYTDDNQLALRMEGLEKPRRKRGRPPKPKVSTEFVDMDSSPIDPVEATEAEQAEEELEDGTRGRRRRRKIPSRYLESVAGSEMDRIFREQGVIDPEEEDIMEEEEQDEVASIRSPGIQKEAKEVIGHMETPEGQDLGQLVVISKSRGRGGGAGTTSRISNRGRKKIGAMATCDVCGQTFPNRSKLHLHRLDHKWNFECSTCREKFPDKVSLDSHQANLGHEGMMVHEDKSENTLSQDAADVAAELLEAERRAEEAEIEEEEIEEGRVTEEDIGNIQVFTCPDCSRSFISKENLEDHNKAVHQGLKPYSCSICEKAFAYPNSLKNHVASFHEDKTELKNGETDPLNKSGAGCTCDICGKVLNHPSSVVYHKESEHNDGRRYVCNKCGKSFKHKQLLQRHQLVHSEERPYVCTTCNASFKTKANLMNHLPTHTGEKKYFCDLCGQQFAHKTSLTLHYRWHTGEKPFQCKVCGKNFSQNGNLMEHMRIHTGEKPFFCNFCGRRFTTSSQFKLHIKRHTGERPWKCEFCGKAFLHKDTWKCHVRRHRGERPYSCEFCQRGFTEQWALKKHLRIHTGEKPYTCDICNKAFSDCSNLTKHKKVHRGGSQDMKDDDGEGVVWQLVQTEGEGEEGDEQTQHIIYVTYQGEEGEEGEGSTATEEAPNFQMLQQLAQERCLGLTGLVMPLPSPGNGGSRPQGNNSLVLGTSDGEEVILNTLGGSLPMVVSSEAPIQLSGPGSNTGTLQVASADGGMSMPVTLTMEDGQLVAHIPSGTQFLSEKEDVGDKVEEQITTREQGEEVEAGEENMQIQLVTEDGRAVQLISTPSDEAGAFSINFGDAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -