Etor004614.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439128.1:27373121-27380238[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.5 3.9e+02 2.2 0.0 2 17 75 90 74 91 0.86 2 14 0.00039 0.028 15.2 0.2 1 23 300 323 300 323 0.97 3 14 0.0013 0.094 13.6 1.2 1 23 328 351 328 351 0.96 4 14 0.00017 0.012 16.4 0.9 1 23 378 400 378 400 0.99 5 14 3.7e-06 0.00026 21.6 1.9 1 23 405 427 405 427 0.98 6 14 6.2e-06 0.00043 20.9 5.1 1 23 433 455 433 455 0.98 7 14 1.1e-05 0.0008 20.1 3.5 1 23 462 484 462 484 0.99 8 14 1.9e-05 0.0014 19.3 0.0 1 23 490 512 490 512 0.95 9 14 0.00023 0.016 15.9 0.1 1 23 518 540 518 540 0.98 10 14 8.1e-07 5.7e-05 23.7 1.0 1 23 546 569 546 569 0.96 11 14 7.6e-05 0.0054 17.5 1.2 1 23 575 598 575 598 0.97 12 14 1.9e-05 0.0014 19.3 1.7 1 23 604 626 604 626 0.98 13 14 2.1e-05 0.0015 19.2 0.6 1 23 632 654 632 654 0.97 14 14 0.0015 0.1 13.4 0.1 1 23 660 684 660 684 0.92
Sequence Information
- Coding Sequence
- ATGGAGGCTACTGAAGAGCAAGTTGCAGTGAATGTGGTACAAATACCTGTGGTGGCTGGGTGTGCGTGGTGCTTTTTGTGTGGCAAGAGAGTAGGTCTCTCCGGTCGCTCCAGCTCCAATATGTTCACCACACAGTCATCCTTGAGCCTAAAACCTCTGAGCGACTGCGTAGCAACGATATTGCAAATAGACCTGCAAGAGGAAGAAATTGCTAGTCAGTTGATTTGTAAAGCATGCCATAAGTCTGTGAGCAGTATTGATGAGCTAGAAGTTCAGCTGGGAGAGCTTCGTGAAGAAGTGGTGACAAGACATCGCAAGACTTTACGTCTCTTGCAGGCAGGAGAGCTACCACCTACTGACTCTGCAGTTGATGAGAAGGTTTCAACTGCAGGAGGACGAAAGTCTAAGCTTGCACAAACAGAACAAGTGGAGGCGGTTGAAAAAGATCTGCCTGAGGTTAACCCAGCACGTAAGCGACGAGGTCGACCTACACTGAAAAAAGAACCTACACCAGGAGAAACTGAAGAAGACAAGttACTGCGCCGACTTGAGGAGCTGCACGGTGAAGTTAGCGAAACTAAAGCAGAGTCTGAGACATTTGTAGAAGCAGAACTTGAGGAAGATGAAGAGGAAATAGATGAGGATGGCATTGCACATGACAGCGACCCAGAGTTCATGCCTGGAGAAGATGAGGACCCAGAGTTTGAGCCTCCAAAGAAGAGTGGTGCACGGGGTCGACCAGGACGTCCAAGGAATTCTGAAGCTGGTGCATCAAAAACTCGAGGTCGAAAGAGCAGGCACGTTATCAAGAAAGACGAGCTTGGAGAGATAGCCCAAGCTGATCTACCTGAAGATGAAGAGGACATTGAGGCATCCCCTGATGACCCTGATGCCGTGTTCTCATGCACATCATGTGATGCAAGGTTCTCAGTGGCTGGTGCTCTCATCACTCACTTGCGTCGCAAGCATGGGGTCACTGTACACATGTGTGACCTGTGTGGCCTTGACTTTGAGACACATGATGAGTTATCTGCACACACTCAAAAAGAACATCCGCCAGATGAAATTGAGGATGATGAGTCAGAAGAAATGCAGAATGATTTTGATCCTGATCTGGATGCTGAAGGCGACTTCCAATGTGAGATTTGCAATCGTCTTTTCTATTCATTGCGAGCATTAAGAGAACACAAACGTGTGCATTATGGAAGAAATTACATGTGTGAAATTTGCCATAAAAGGTTTGCATCACGCACCCTACTTGAGGAGCATCAAAATACGCATACTGGCCAACGTCCTTATGAATGTAACATGTGTCACAAAACTTTTGCCTCCAAGTACTGCCTTAAAGTACACATCAAGATTCACGAGGTGCGACCAAGGCCATACTCTTGTGACTTCTGTGGCAAGACCTTTATGAAGCCTGAGCATCTCTCACAGCATAAGAGAACACACATTTCCCAGAAGGACTATGTTTGTGGTACTTGTGGCAAGGGCTTCAGCAGCGCTCGCAATCTTGAAGTCCATGCTGTAGTTCACACAGGCTACAAGCCATTTGTATGCCGCACCTGTGGTAAGGCGTTTGCTCGACGCGCTGAGATTCTAGACCATGAGAGAATTCACACTGGGGAGAGACCCTTCCAGTGCGAGACATGTGGGGCTACTTTTAGCCAGCGCTCCAACTTACAGAGTCATAAGCGTGCCACACACATGGATGATAGAAGATTTGTTTGTCAGGCGTGTGGCAAGAGTTTTAAGCGTCGGCGTCTACTTGACTACCATACTCGTTCAGTTCACACTGGCGAGCGGCCATATGCTTGTTCTGAGTGTAATGCTACCTTTGTCTATCCTGAGCATTTCAAGAAACACCGCCGCATTCATACTGGAGAGAAGCCCTTCCGCTGTGAGgTTTGTGGCAAAGCCTTTAACTCTCGTGACAACCGAAATGCTCATCGCTTCATCCACTCTAATAAGAAGCCTTATGAATGCTTGGTTTGTGGTCTGGGTTTCATGCGCAAACCTCTACTTTACAGTCACATGCAGTCCCAAGGACATGTGCATGACACCATTGTTGTCAACCAGCCACAGGTGCCTCAAGTGGGTAGTAATGTGGTGAATGAAGCAGCAGCTGCAGCTGGCATTTCAGCTGACAAAGTTTATGTTGCAACTCAgGATGATCCTGAACCTCAACATGTGGAAGAGGTAGAACATATCTTAATTGAAGGCCCAGTTCACTTTGAGACAGAAGGAGAAGTTGGTGAGGTCGGTGAACGCACACATGCTATCCTGGTACCTGTGTCAGGTGGAGAACAAGGGAAAGATGGCACTAATGTACAGCTAGTGCAAATAAGGTTGCAGGGATCAGGAGAGCAGCAATGGATCAACCTCTCTACCTCCTAG
- Protein Sequence
- MEATEEQVAVNVVQIPVVAGCAWCFLCGKRVGLSGRSSSNMFTTQSSLSLKPLSDCVATILQIDLQEEEIASQLICKACHKSVSSIDELEVQLGELREEVVTRHRKTLRLLQAGELPPTDSAVDEKVSTAGGRKSKLAQTEQVEAVEKDLPEVNPARKRRGRPTLKKEPTPGETEEDKLLRRLEELHGEVSETKAESETFVEAELEEDEEEIDEDGIAHDSDPEFMPGEDEDPEFEPPKKSGARGRPGRPRNSEAGASKTRGRKSRHVIKKDELGEIAQADLPEDEEDIEASPDDPDAVFSCTSCDARFSVAGALITHLRRKHGVTVHMCDLCGLDFETHDELSAHTQKEHPPDEIEDDESEEMQNDFDPDLDAEGDFQCEICNRLFYSLRALREHKRVHYGRNYMCEICHKRFASRTLLEEHQNTHTGQRPYECNMCHKTFASKYCLKVHIKIHEVRPRPYSCDFCGKTFMKPEHLSQHKRTHISQKDYVCGTCGKGFSSARNLEVHAVVHTGYKPFVCRTCGKAFARRAEILDHERIHTGERPFQCETCGATFSQRSNLQSHKRATHMDDRRFVCQACGKSFKRRRLLDYHTRSVHTGERPYACSECNATFVYPEHFKKHRRIHTGEKPFRCEVCGKAFNSRDNRNAHRFIHSNKKPYECLVCGLGFMRKPLLYSHMQSQGHVHDTIVVNQPQVPQVGSNVVNEAAAAAGISADKVYVATQDDPEPQHVEEVEHILIEGPVHFETEGEVGEVGERTHAILVPVSGGEQGKDGTNVQLVQIRLQGSGEQQWINLSTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -