Etor009050.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439130.1:17782450-17789832[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.7 1.9e+02 3.2 0.0 2 23 242 264 241 264 0.92 2 18 0.53 38 5.4 0.1 2 23 270 292 269 292 0.92 3 18 0.00072 0.051 14.4 0.1 1 23 374 397 374 397 0.96 4 18 0.28 20 6.2 0.0 1 23 400 423 400 423 0.93 5 18 0.00088 0.062 14.1 0.7 2 23 426 448 425 448 0.90 6 18 9.3e-06 0.00066 20.3 1.4 1 23 455 477 455 477 0.98 7 18 1.9e-05 0.0014 19.4 0.5 3 23 485 505 483 505 0.96 8 18 8.6e-06 0.00061 20.4 4.1 1 23 516 538 516 538 0.98 9 18 0.00026 0.019 15.8 1.0 1 23 544 566 544 566 0.98 10 18 0.27 19 6.3 3.9 1 23 572 595 572 595 0.96 11 18 0.0022 0.15 12.9 0.4 2 23 602 623 601 623 0.97 12 18 0.0039 0.27 12.1 0.1 3 23 690 710 688 710 0.96 13 18 3.7e-06 0.00026 21.6 0.3 1 23 719 741 719 741 0.99 14 18 5.4e-05 0.0038 17.9 1.2 1 23 747 769 747 769 0.98 15 18 1.5e-06 0.00011 22.8 2.7 1 23 775 797 775 797 0.98 16 18 1.8e-05 0.0013 19.4 8.0 1 23 803 825 803 825 0.99 17 18 2e-05 0.0014 19.3 0.1 1 23 831 853 831 853 0.98 18 18 0.0018 0.13 13.1 1.9 1 23 859 882 859 882 0.98
Sequence Information
- Coding Sequence
- ATGAAGAAGTCCTGGCCGAAGACGTCCACATCCAAGGGAGTAAGAAAAGATGCAGGACAGCAAGGAAGCTCCCAAGCCTTAGCTCAACCTGgtTGGCAAGCAGGCAATGGCGATGAAGCCGTTATTTCAGTTCCTGTAGTTAAAAATGAACGAGGAGAGGATTTTGATCATCAAGGTCCTTCTTCAAGAATTGTACTGCGTGTTTGGCAGTTATGTCGAATGTGTGCTGGAGCTGGAGAATCCATGGTTAGCATCTTCAGTGATGAAGGACGAGAGCAACAACTGGCAAGCAAGATGCGCCAACATCTTCTCATTTCAgtgagTGCAGATGACTGCCTGCCGTTGAGAGTATGCTCACGTTGTGTGGGAGAACTGGACTCCTGTCACCAACTTGCACAGCGATGTGCTCAGGCTGATGCTACATTACGCTGTTTAttgcaagaagaagaagagcaGGGTCTCTCTGGATGGAGCTCTGGTGAAGACAACAGAGAAGAGACCAATTGGGCCACTGACTCCAGCTTAGCTACTATGGCACAGGTGTGGTTGAATGAGCACGGACAAGGTTCAAACCAGAGTCAACAGCAAGCACAAAACTCTCCTGGAGTAGCTGAAgacaagataaatattttccaggcAAAAGGAAATCCTCCTGGAAATCCACCGGCACAAATCAGTGAGGGTAACAGTCGTGCTTTACAAATGCTGGAGATGAAACGTCTTTCTTGCTGGGAGTGTGGATCTTCATTAAGAGGAGTTAATGCATTTGTGGCCCACCAGAAGGAGGCTCACTCTCGAGAACTTCTGCCTTGTCAGGAATGTGGGGGTCTCTACAATTCTCTAGAGCAGTTGATGTATCATTGGAAAGATCAACATCCACAGATATCTCAACAGATGTCTTCAACTTCCAATGCTGAAGCATCTAACTCAGTGCTAAAATCAAAACGGAAAGCTGCTTCTCCTAAAAAAGCTTCAACACCTTCTCCTGTGcccaaaaaagaaaagaaaacaccAGTTCCTAAGCCACCTCCAGAAATGACAGACGAAATGCTGGATAACTTGGAAAATGTACCACTGAGAGAACGACTGAGGAATAAAGAACATAGGAAGATTCCAACATTTGAGTGCAAGTTGTGTTCAGCAGATTTTGATAGAAGATCAGCTTTACGAGAACATCTTGAGGTTGAACATGAGCGTTACGAGTGTCGTGTTTGTGAGCAATTGTTTGAGAGTGCAGAAGAAGCTCAGAAGCATGCCCAAGGTCCTCATGAAATCACATGTTCTCAATGTCAAGAAACTTTTCCTACTCAGAGGTCTCTTAAGAGCCATACTGTTCAAATGCATTATGAAGGCAAGAGACCTTTTGTGTGCTCCGAATGTGGTAACCATTTCATCTCTAAAATAACTCTGAGAGCACATATGAAAACTCATGATGGAAAGAGAACAACAATTTGTGACATTTGTGGGAAAGGTTTTAGGACCTATGATGCTCTGAAACAACACAAATTTACACACATGACAgacgaagaaaagaaaaacataggtttttcatgTACGATGTGTGAGAAAAAGTTCTCAAGAAGAACTAAATTAGAATATCATATGAGAAGACATACAGATGAACGTCATTTTACTTGTGCTATTTGTGCCAAGTCTTTCCATGATTCTGTTAGACTTAAAGCACATATGGAACGTCATAGCACTGATAAAAAGTTCAAGTGTGATGAATGTGGTTCAGGATTTGTTTGTAAGCGCTATCTAACAAACCATAAATCTCGTTATCACAGACGACGTGAAGTTATCAGATGCACAGTATGCAAAAACGTGTTTAATTCTGCCGAAGATGCTATGAGACATTATAAAACACACTCACCAGAAGAAATAGCACAAAGTGGAACCACAGAACCATACACTCAAACATTTGATCATCATTGTCGTCAGTGTTGTGAATATTTTCCAAGTAAAGAAATGTTGGATGCACATAGAGCAACAAGTCATGTCCGTGGTAGATCACATAAAACCACTCTAACTCCTCTGGATATGGCAGAGTTAATAAGACAATTAGATTGTACTATTTGTGGTAAGAAACTATGGGGAGCTGGTAGTTTAAAACGTCATATGAGTACTCATGCTGGCTCCAGACCTGAACGTACCTTCCAATGTGAATTTTGTGCTAAAATGTTTGCACAAAAAGCCCAGCTTGTGGTACATATCCGCACCCATACAGGTGAAAGGCCTCACAGGTGTACTTACTGTGGCAAAGGATTCATCACAGGACAAAGTCTTGTTAAGCACGAGAGAATACACACTGGGGAGACTCCATTCCATTGTAACCAATGTCCCAAGGCCTTCCGTAGCAAAGAGAACCTCATACTTCATCAAAAGACACATTTGGGTCTTAAGCCATATGAATGCCATTACTGCCATAAACGTTTCGGACGTCAGATCCACTTGCAGCTGCATCTCCGTACTCACACCGGTGAACGCCCATATGTTTGTGACATTTGTGGTCGTGCCTTTGCTCAGGGTGGAGATATGAGACGTCATCGTCTCACTCATACTGGTGAACGTGCATATAAATGTGAAATGTGTGGTTTCTCCAGTAACAAGAGGAAAACTCTGAGAGAACATGAGCAAACAACCCATGGACAAAACCCTAATCGTGTACAAATGCCAACAGGTATTCCTGGTATTAATATGAGTAATATTGGAGTTAATGTTGGTGTAGGTGGAGTTGTAGGGGTTGGAGTTGGTGTAGGGGTAGGTGGTTCATTGGTAGCTCGACCTGCACCTTCAAATATTGTTCCTAGTGTACCACAACATATGATGCCTAATCCATCACAATATGCAGCATTACAAGTCCAAGTACAGGACCCACGTATGTTCCTTACTGcagatttgcataaaaattggagtgaaaactaa
- Protein Sequence
- MKKSWPKTSTSKGVRKDAGQQGSSQALAQPGWQAGNGDEAVISVPVVKNERGEDFDHQGPSSRIVLRVWQLCRMCAGAGESMVSIFSDEGREQQLASKMRQHLLISVSADDCLPLRVCSRCVGELDSCHQLAQRCAQADATLRCLLQEEEEQGLSGWSSGEDNREETNWATDSSLATMAQVWLNEHGQGSNQSQQQAQNSPGVAEDKINIFQAKGNPPGNPPAQISEGNSRALQMLEMKRLSCWECGSSLRGVNAFVAHQKEAHSRELLPCQECGGLYNSLEQLMYHWKDQHPQISQQMSSTSNAEASNSVLKSKRKAASPKKASTPSPVPKKEKKTPVPKPPPEMTDEMLDNLENVPLRERLRNKEHRKIPTFECKLCSADFDRRSALREHLEVEHERYECRVCEQLFESAEEAQKHAQGPHEITCSQCQETFPTQRSLKSHTVQMHYEGKRPFVCSECGNHFISKITLRAHMKTHDGKRTTICDICGKGFRTYDALKQHKFTHMTDEEKKNIGFSCTMCEKKFSRRTKLEYHMRRHTDERHFTCAICAKSFHDSVRLKAHMERHSTDKKFKCDECGSGFVCKRYLTNHKSRYHRRREVIRCTVCKNVFNSAEDAMRHYKTHSPEEIAQSGTTEPYTQTFDHHCRQCCEYFPSKEMLDAHRATSHVRGRSHKTTLTPLDMAELIRQLDCTICGKKLWGAGSLKRHMSTHAGSRPERTFQCEFCAKMFAQKAQLVVHIRTHTGERPHRCTYCGKGFITGQSLVKHERIHTGETPFHCNQCPKAFRSKENLILHQKTHLGLKPYECHYCHKRFGRQIHLQLHLRTHTGERPYVCDICGRAFAQGGDMRRHRLTHTGERAYKCEMCGFSSNKRKTLREHEQTTHGQNPNRVQMPTGIPGINMSNIGVNVGVGGVVGVGVGVGVGGSLVARPAPSNIVPSVPQHMMPNPSQYAALQVQVQDPRMFLTADLHKNWSEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -