Etor014463.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439132.1:37027018-37036157[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0012 0.084 13.7 0.3 2 23 239 260 238 260 0.97 2 24 0.00026 0.019 15.8 0.7 1 23 266 288 266 288 0.97 3 24 0.00021 0.015 16.1 0.3 3 23 296 316 295 316 0.97 4 24 0.052 3.6 8.6 0.8 1 23 322 344 322 344 0.94 5 24 0.0067 0.48 11.3 4.1 1 21 350 370 350 372 0.94 6 24 0.0061 0.43 11.5 5.7 1 23 382 404 382 404 0.96 7 24 0.03 2.1 9.3 0.3 1 23 410 432 410 432 0.94 8 24 6.3e-07 4.5e-05 24.0 0.1 1 23 438 460 438 460 0.98 9 24 1.4 96 4.1 0.1 1 23 525 548 525 548 0.92 10 24 0.0012 0.085 13.7 0.2 1 20 552 571 552 573 0.93 11 24 5.8e-05 0.0041 17.8 0.6 2 23 591 612 590 612 0.97 12 24 0.41 29 5.7 3.8 1 13 618 630 618 632 0.91 13 24 0.083 5.9 7.9 1.1 1 23 671 694 671 694 0.97 14 24 0.0087 0.62 11.0 0.2 1 20 698 717 698 719 0.92 15 24 3.8e-07 2.7e-05 24.7 1.3 2 23 737 758 736 758 0.98 16 24 7.8e-06 0.00055 20.6 0.8 1 23 764 786 764 786 0.98 17 24 0.02 1.4 9.8 2.7 1 23 792 814 792 814 0.98 18 24 0.00061 0.043 14.6 1.8 1 23 820 842 820 842 0.95 19 24 1.2e-05 0.00083 20.0 2.7 1 23 848 870 848 870 0.98 20 24 0.0014 0.096 13.5 1.8 1 23 880 902 880 902 0.97 21 24 0.079 5.6 8.0 1.3 1 23 908 930 908 930 0.94 22 24 1.1e-06 7.4e-05 23.3 0.1 1 23 936 958 936 958 0.98 23 24 2.7e-06 0.00019 22.0 1.5 1 23 964 986 964 986 0.98 24 24 4.3e-05 0.0031 18.2 0.6 1 23 992 1014 992 1014 0.96
Sequence Information
- Coding Sequence
- ATGGCCTCGTCTGCGAACTTCGTAGACTTATGTCGAATTTGTGCCACAGAAACACAGAGTATAGTgagacattttatttttgaaggCGAAGGAAAGTTACGTGATCTCTCTAAAAAAATCGCCGCTTGTTTACCTGTTAAGGTCAAAGAAGATGACCGCCTTCCTAAAGTGCTGTGTGGCGAATGTGTATATAAATTGGACTTGCTTCATGAATTCCGCGAGAAAAGTCAAAAGACAGAAGCCTATCTTTTCACTCTCATAGAACCCACAGATAATGATCATCTCGTCAAGAAATCCACTTCATCCCATCTGgatgaagaagaagaggaagacgATGATGACTACAGAGGTGGTGATGATATTGGTCATGACTCCCCTGAGGAGGAGGAAGAGACTAGAGAACCTGAAGTTGTGATCAAAGTTGAGGAGGAAACGCGGGGTGAGGCTGCGGCCGCCCATGCCACTGCTCAAACACCTCAAACCTCTGAAGATGTTGATACTGGTGGACCTTCGTCCAGCAAACGACCTAGACGAGCTGCAGCTAACAAGCGACCCATCCGAGAAGATTCCCCATCTCTTGAAGCCCCCAgctccccccctccccccaaacgCCGTGGTCGCAAGCCCAAGAATCAGCAGGCCGCTGCGCCAGCTGCAACCCCGGGCACCAGCACCTCTGGacCTGAGATTCCTAAATTAGCTGGTAAAAGAGTACAATGTGAACAATGTGGGGAAACATTTGGTAATTCACGACGATTGGTTGATCATCTTAGTAAACATGCAGGTGCTAGACCTTTTACTTGTGAGTTATGTGACCGTAGTTTTACTTCTCGAGGTCGTTTAGATGCACATACTGATAAACACACTAGTGGATGGAAAAACATATGTGTTCATTGTAATATGGGGTTCGCCTCTCAAAATGATTTAGAAGTTCACGTTCGCACTCATACAGGTGAACGTCCATATTCTTGTGATGTGTGCTCTGATGTTTTCATATCCAAGACTGCATTGATGAACCATAAAGTCCATCATACTACATTACCAGAATATATATGTGACGACTGTGGTAAAAGATGTGCGTCTTCTGCAAAATTAAGGGAACACAAGAAGTGTCATATCCCATTAGCAGAAAGACGTAAACCACATGCTTGTCatttgtgtaataaaaaatttcatgttcCATCTCGTTTACGTGAACATATCATGAAACATACAGGAGAAAGACCATTTTTATGTGACACTTGTGGCAGGGGTTTCTTTAGTCGTCGTGAGATTATTTTACATACTTTAGTTCATACTGGGGAGAAATCATTTATTTGTGAGATGTGTGGTAAAGCATTTGCTCGTAAAGAGGCTCTAGTTGTCCATAGACGTACTCACACCGTGCGTCGGTGTCTTTGCAGGCCGACGTCACAAGTTCCGCCCGCAGCCCCCGCGATTGATATGTTGAACTTAATTGGTGATGATGATGCTGAGAAGCAGCTTCCCGCGATGGCAGAACAGACGTGTCCACAAGTAGAGGAACAACAAGTGATCACTGACACCATCATTTCCCCTGTGGAACAAACTTACTTTCAATGTATATATTGTGGCTTGTTGTTCGCCACGCTTGAGTTAACTAGATCTCATATCTCTGCAGAACATCCTAAGGTTCATATATGCGAAGTTTGCGAGAAAGGGTTTCGTACTCCTGAGGCCTTACAAGAGCATAAGCACGAATATGTGCGACAAATGGAGGTAGAGGCTGAGAAAAAGCGAGCGCAGATCAAGAGTTGTAATGTTTGTGGACGTCAGCTTAGGAATGAACGTGCGTTACAAGCGCATATGCGTAAACATTTAGGGGAACGACCTTTCAAATGTGAATATTGCGAGAAAGCTTTTTGTCATAGGACTGGGCCAGAAATGGTCGGAATGAAAGACGATGCCCAACTTCCGAGTACAACACATCCGAAGAATGATAATTCATTACAAGAACAACACGTGGAGTCCGAGAGCATCAAACCTACTTTATttcaatgcaaattttgtaaAGCTTTATTCTCTAGTCTCGCTGAAACTCAATCTCATATTTCATCTAAACATCCTAGATGTCATTTTTGCGACGTTTGTAGTAAAGGTTATCGTAGCGCGGAAGAATTAAGAATTCATAAGTTAGAGTATATTAGACAGGCAGAGGAGGAACAAAAACGAAAATTAGCTCGGATGAAAACGTGTCCTGAATGCAATAAAAGATTTCGAGATCAACAAGCCCTTAATGAACATATGCGACGTCATACGGGGGAGCGCCCCTTTAAATGCGACATTTGCGAAAAGGCTTTTACATCTAAAAGTGGGTTATATTCCCATACTGCAAAACATACTAACACATGGAAATATATGTGCGGCCATTGTGGACGGGGATTTATTTGTAAAACATCATTTGAGATTCACGAGCGCGTGCATACAGGCGAAAAACCATTTGCTTGCGATAAATGTGACAAAGCATTTTCTTCAAAACAAGGTCTATTTGGCCATAGACATTTACATGATGCATTACCTGAATTTAAATGCGATAAATGTGAAAAACGATTTGTTACAGCtactaatttaaaaatgcataagaAATCTCATGTACCTGCAGAATTAAGAAGTAGAGATCATGTTTGCTACATATGTGAATCTCGTTTTGAATATTTATCtacattaaaaaatcatttacgtATTCATTCTGATCATCGTCCATATTTATGTGATAATTGTGGTAAAGGTTTTTTGACTAAACGTGACATGCACTTACATACATTAATTCATACAGGAGAAAAGCCATTTGTTTGTGAAATTTGTGGTAAAACTTTTGCTAGGAAAGAAGGTCTAGTTATGCATGGGCGTACTCATAGCGGTGAACGTCCCTATCCTTGCGATATTTGTACTCAAACGTTTACTCAACGGTCCACTTTAAATACGCACAGACGTCTTCACACTGGGGAGAGACCCTATCTTTGTGCCACGTGTGGTAAAGGTTTCACTTCAAAATCTGCTATGGTCTCACATCAGAAAAAACATGCATTAGAATTAGATTCGCATTTGGACGAAGCTCTGTTGCTCAGCTTATGA
- Protein Sequence
- MASSANFVDLCRICATETQSIVRHFIFEGEGKLRDLSKKIAACLPVKVKEDDRLPKVLCGECVYKLDLLHEFREKSQKTEAYLFTLIEPTDNDHLVKKSTSSHLDEEEEEDDDDYRGGDDIGHDSPEEEEETREPEVVIKVEEETRGEAAAAHATAQTPQTSEDVDTGGPSSSKRPRRAAANKRPIREDSPSLEAPSSPPPPKRRGRKPKNQQAAAPAATPGTSTSGPEIPKLAGKRVQCEQCGETFGNSRRLVDHLSKHAGARPFTCELCDRSFTSRGRLDAHTDKHTSGWKNICVHCNMGFASQNDLEVHVRTHTGERPYSCDVCSDVFISKTALMNHKVHHTTLPEYICDDCGKRCASSAKLREHKKCHIPLAERRKPHACHLCNKKFHVPSRLREHIMKHTGERPFLCDTCGRGFFSRREIILHTLVHTGEKSFICEMCGKAFARKEALVVHRRTHTVRRCLCRPTSQVPPAAPAIDMLNLIGDDDAEKQLPAMAEQTCPQVEEQQVITDTIISPVEQTYFQCIYCGLLFATLELTRSHISAEHPKVHICEVCEKGFRTPEALQEHKHEYVRQMEVEAEKKRAQIKSCNVCGRQLRNERALQAHMRKHLGERPFKCEYCEKAFCHRTGPEMVGMKDDAQLPSTTHPKNDNSLQEQHVESESIKPTLFQCKFCKALFSSLAETQSHISSKHPRCHFCDVCSKGYRSAEELRIHKLEYIRQAEEEQKRKLARMKTCPECNKRFRDQQALNEHMRRHTGERPFKCDICEKAFTSKSGLYSHTAKHTNTWKYMCGHCGRGFICKTSFEIHERVHTGEKPFACDKCDKAFSSKQGLFGHRHLHDALPEFKCDKCEKRFVTATNLKMHKKSHVPAELRSRDHVCYICESRFEYLSTLKNHLRIHSDHRPYLCDNCGKGFLTKRDMHLHTLIHTGEKPFVCEICGKTFARKEGLVMHGRTHSGERPYPCDICTQTFTQRSTLNTHRRLHTGERPYLCATCGKGFTSKSAMVSHQKKHALELDSHLDEALLLSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -