Etor016518.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439133.1:29242831-29243484[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-08 0.00011 22.1 0.0 4 41 30 68 27 70 0.89 2 2 4.8 8.5e+03 -3.1 0.1 27 32 96 101 96 102 0.93
Sequence Information
- Coding Sequence
- atgttTAAGCCCAATTTGAATTTACAGATGGTGAAAATTTACAAGAGGTCTCCCGGTGCCAGAAAATACAAAGATTATGATGAACCCACACTGCAGATGGCTCTGAAAGAAATTACCAACAAAGTGTGCACATTGTTGCAAGCTGCTCAGAAGTTCAACATTCCTCGAAACACACTCATAAACAAGCTGAAAGATCGGCACACAAAAACGCCAGGAAGACCACGCATTTTCTCACAGAAAGAAGAAGAACTCATTGCAAAACATTTGGTCCTTCTTTCTGAGAATGGAATTCCTTTCACGACAACAGACCTCCGTAAAACAGTTCAGATTTACTTGAAGAGTATGAACAGAGAAGTGTCTCAGTTCAGAGACAATCTTCCTGGAATTGATTGGGCTCGCAACTTTATCAAGAGGCATAATCTTAAAGGGAACTTAAAGAGAGCTATGACTGGAGCCACCATACAAGAAAATGGTGAGAAAGTGCTCTTAAACCCTGTTTCAAATCATCAAACAAATCGCAATGAACGTCcaggaaggaaaaaaagaacAAGCAAGAAAGGACTTTGCGTCGCTGAGGAAACATTGAGTTCACCTGACTTGACTGGCGTAAGCAAGGATTTCCTAACATACATTAAGACTTttggaaataaataa
- Protein Sequence
- MFKPNLNLQMVKIYKRSPGARKYKDYDEPTLQMALKEITNKVCTLLQAAQKFNIPRNTLINKLKDRHTKTPGRPRIFSQKEEELIAKHLVLLSENGIPFTTTDLRKTVQIYLKSMNREVSQFRDNLPGIDWARNFIKRHNLKGNLKRAMTGATIQENGEKVLLNPVSNHQTNRNERPGRKKRTSKKGLCVAEETLSSPDLTGVSKDFLTYIKTFGNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -