Etor021219.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- br
- Assembly
- GCA_949318235.1
- Location
- OX439137.1:19343357-19348571[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-10 5.2e-07 29.6 0.0 2 38 307 344 306 349 0.90 2 4 2.5e-08 4.4e-05 23.4 0.0 2 38 361 397 360 403 0.87 3 4 4.8e-17 8.5e-14 51.3 0.0 2 42 416 456 415 458 0.96 4 4 5.3e-18 9.4e-15 54.4 0.0 3 43 468 509 466 510 0.95
Sequence Information
- Coding Sequence
- ATGGGTTCGCCCGGGGTGCTGGGTCAGCACTACTGCTTGCGATGGAACAACTACCAATCAAATATGACCTCCGTATTTCATCAACTTCTACAGGATGAATCTTTCGTGGACGTTACTTTGGCGTGCAATGATGCTTCCATCAAAGCACATAAGGTTGTATTGTCCGCGTGCTCGCCATACTTCCAGAAGCTACTGCTAGAGAACCCCTGCAAACACCCAGTGATCATACTGCCACAAGAAGTCAACTTCATGGACTTGCAGTTTATCATAGAGTTCGTGTACCGCGGGGAGATTGACGTTACACAAGCAGAACTGCAAAGTCTGCTGAGGACGGCGGAGCAGCTCAAGATCAAGGGGTTATGTGAGGTGGCTGCTAGGGAGATCAACTCTGAGCCAAGGAGGCATCCCAAGGTCAAGTTCTCCACCTTCAGTAACAAGAGGACTGCAGTGCACAGGTCTGTGATGGATCAATTTGACTACCAACATCACGGCATGCCCATGTTGATGAAGGCAGAGCTGGACCTGTCCAGTGGAGCACATGGAGATGACATGGACACGAGCTACTCTGACGTGGACGTGGAGGAACCGAGGAACCTCGTCAGTAAAGACAAGGATGATACAGACGTCAATGCTAACTCAGCCTCACAACCTGCGCTACAGGAGCCTCAGGGAGGCGTGGCAGTGGCAGCGGTACAACACAGAATACATGACAGACTTGGAGTGAAAGTGGAGCACAGGGTTGGAGAACAAACACCCTTGGACATGGCACTGGAATCACATCATAGCAGTGAGAGGGGCTCTGAGGAGGACCAGACGATGATGATCACACCTGAACTTCTTGGTCTCATTCCTACATCATCTCTGCACTCGGATGCAAGCTGCGATGTCCCACTTCACAAAACCACTAAACATTGGTCACAAGAAGACATGGAACTTGCTTTAGAAGCACTAAGATCACAAAGTATGAACCTTACAAAAGCATCTGCAACATTCGGTATTCCCTCTACTACATTATGGCAACGTGCTCACAGACTAGGTATCAATACACCTAAAAAAGACAGCCAGGCTAAGACGTGGAGTGAATCTGATCTAAATCTTGCCTTGGATGAACTTCGTGCGGGTAGAATTTCAGCCAACAGAGCCTCTAAAACTTATCATATTCCTAGTAGCACACTATATAAAATTGCACGTAAAGAAGGTATCAAATTATCAGCACCTTTCAATGCATCACCTACAACTTGGAATAATGATGATTTAAATCGAGCTTTGGAAGCAATAAGAAGTGGAGCATCGGTTCAGAAAGCGGCTTCTGAGTATGGTATTCCGAGTGGTACTCTATATGGAAGATGTAAGCGAGAAGGGATCGAGTTATGTAAAAATACACCTGTCCCGTGGTCGCATAGTGATATGAACGAAGCATTAGATAGTGTAAGAAGTGGTGAAATGAGTATAAATCAAGCGGCAATTCATTATAATCTACCTTACTCTTCTTTGTATGGTAGATTTAAGAGAGTGAAATATGAAGCTACGGATGGTCAGTCAAAGTTAGATTATGAAATGTTCTCTTGTAATTCAAGTGAACCGGGGACTCACTGA
- Protein Sequence
- MGSPGVLGQHYCLRWNNYQSNMTSVFHQLLQDESFVDVTLACNDASIKAHKVVLSACSPYFQKLLLENPCKHPVIILPQEVNFMDLQFIIEFVYRGEIDVTQAELQSLLRTAEQLKIKGLCEVAAREINSEPRRHPKVKFSTFSNKRTAVHRSVMDQFDYQHHGMPMLMKAELDLSSGAHGDDMDTSYSDVDVEEPRNLVSKDKDDTDVNANSASQPALQEPQGGVAVAAVQHRIHDRLGVKVEHRVGEQTPLDMALESHHSSERGSEEDQTMMITPELLGLIPTSSLHSDASCDVPLHKTTKHWSQEDMELALEALRSQSMNLTKASATFGIPSTTLWQRAHRLGINTPKKDSQAKTWSESDLNLALDELRAGRISANRASKTYHIPSSTLYKIARKEGIKLSAPFNASPTTWNNDDLNRALEAIRSGASVQKAASEYGIPSGTLYGRCKREGIELCKNTPVPWSHSDMNEALDSVRSGEMSINQAAIHYNLPYSSLYGRFKRVKYEATDGQSKLDYEMFSCNSSEPGTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00630689;
- 90% Identity
- iTF_00630689;
- 80% Identity
- iTF_00630689;