Basic Information

Gene Symbol
ARID5B
Assembly
GCA_949318235.1
Location
OX439133.1:5976113-5990713[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 6.9e-27 1.6e-23 83.2 0.3 1 89 211 297 211 297 0.95
2 3 5.8 1.3e+04 -3.1 0.0 43 68 500 526 496 534 0.65
3 3 4 9.2e+03 -2.5 0.0 8 21 571 584 564 633 0.56

Sequence Information

Coding Sequence
ATGATTCTAAAGAGTAATTCGCGTGACGAGGTTATGGCAATCACCGAGAAGGTGGTACTCAAAGCAGAAGACCTGATCTCATGGATTATGCCAGATGGTGTCGAGTGGCGCTGGGGACATCAGGAGTCATGGAGTGCTCCATCAAACAAAGAGGTAAAGACCGAGTCAGGCAGCAAAAGCACCGACATCGCACAAAGCGTGGTGGTGCTAAGTTTCCCGCGCTACTGCAGATATCGAACTATCGCACGTCGACTCGAAGGTTCCCCAGAGTCCTGGATGCAATCTGCCCTGGTCGCAGCTCTAGGGGGTGTCACAGGACTCCACAAAGAGACCAGAGTACTTTTCTGTAAAGATACTTTCGATTATCCAGACTTAGAGGGACATGAATTACTCTGCAATCATCTGGCTCCTAAATTGACTGGCCGCCCTCGTAAGAAGAGAAAGAAGCGAAGTTCATCTCCTGGATCAGAATCCAATGAATCTGAGGGTTCTTCCTATTCTACTGAGTCCACCAATGCAAAGgTGACTAAGAGACCAGGTCGCGGTCGTCCTCCAGGTTCAGTGAAGCTAGGAGGTGCCAGGATTGTCAACACAGGAGTCAGGTTGGCGAGCAGTGCAGCTAACACTCTCGAGGAGCAAGAGTTCTTACATGGACTTTATGCCTACATGGAGAAACAGAAGAACCCTATTGACCGTATTCCCAGTCTGGGATTCAAACAAATTGACCTGTATGCATTCTACAAGAAAGTACGCAGCCTGGGAGGCTACGAACAAGTGACCACTCGCAAGTTATGGAAACGTATTTACGACGAGATGGGTGGAAGTCAGAGCAACACAAGTGCAGCTACGTGTACGAGAAAACACTATGAACGTCTCTTACTTCAGTACGAGGTGTACTTACTGAAGAAACCTCTGGCTAATCAACCTCGTAAGAAATCTTCACAGTCTGCTCTGGAGAGAGTTCAAGCCATGGCGGGGACTGTGGACAAGAAGATGGTCAGGAAACTTTCTGCTcagGAGGAGATAATAACAATAGAAGAAATTCCATTAAGAAGACCATCATCAGAAGATTCACCttcattaaagaaaagaaaattagaaattttacaaCAAGGTGGTTTAGAAGTCACACCTGTAGGTTCAAAACATAATCCCAACCGAGTCACCACACCACCCGTCAAACGTGAACCAACAGCTGTTACTAACCAATTAAATAACCAGGTATCTATAACAGTTACCCCTGACGTACATCACTTAACAGTTACCCCTGATCTATCACTAATGTTAGGTGGTTCTGAATCTTATAAACAACAACCATCCATAATGCAACAACATCATATGTTCAGTGGTACCGGACGTATATACGGTAACCCAAAATTAGATGTGGCTACAGATAGAATCAGACCTGATTTAGAGGTACTAGATCTAACTATTAAACCTGCTACTAGCGTAACTGCAAAATATAAACCTGAGCTACCTCCACATTTAATGATACAAAATAACGGACATCATGCGTATCAACAACAAGTATCGAGAAGTAAAGCAGTTGCAAATGCTGTTAAACTTCCTAAAGCAAATCTAAGTTCAAGCTTAGAAATAACATTAGTTAATTCTGCaggtgaaaaaattaataatacaaaaaaatcttCAGCCACTTCTACAACATCTAATGGATCTACTTCTTCTactaaaaatcaaaatcatactAGATTATTACAGCaacaaatgcaaaataaaaataatccataCAATTTACAGGCAATACATGATCCTGCAAtgtattatgcattatataattCTCAAATATACTCACAAGCTCAAGCAACTcaagaattatataaaagtctACACTCAACAGGTTCACATCAAGAGTTATTGAAAAGTTTACAAGCTCCGGGGGCAcaagaattatataaaagtctATTAGCTCATCCTGCTTCTTTGCCATTTGTTGCATGTTATAATCAAGCATTCCCTGGGTTACCAAAAGATGGTAGTACCTCTATTACACCATTACCTAGACCACATacgtcaaaataa
Protein Sequence
MILKSNSRDEVMAITEKVVLKAEDLISWIMPDGVEWRWGHQESWSAPSNKEVKTESGSKSTDIAQSVVVLSFPRYCRYRTIARRLEGSPESWMQSALVAALGGVTGLHKETRVLFCKDTFDYPDLEGHELLCNHLAPKLTGRPRKKRKKRSSSPGSESNESEGSSYSTESTNAKVTKRPGRGRPPGSVKLGGARIVNTGVRLASSAANTLEEQEFLHGLYAYMEKQKNPIDRIPSLGFKQIDLYAFYKKVRSLGGYEQVTTRKLWKRIYDEMGGSQSNTSAATCTRKHYERLLLQYEVYLLKKPLANQPRKKSSQSALERVQAMAGTVDKKMVRKLSAQEEIITIEEIPLRRPSSEDSPSLKKRKLEILQQGGLEVTPVGSKHNPNRVTTPPVKREPTAVTNQLNNQVSITVTPDVHHLTVTPDLSLMLGGSESYKQQPSIMQQHHMFSGTGRIYGNPKLDVATDRIRPDLEVLDLTIKPATSVTAKYKPELPPHLMIQNNGHHAYQQQVSRSKAVANAVKLPKANLSSSLEITLVNSAGEKINNTKKSSATSTTSNGSTSSTKNQNHTRLLQQQMQNKNNPYNLQAIHDPAMYYALYNSQIYSQAQATQELYKSLHSTGSHQELLKSLQAPGAQELYKSLLAHPASLPFVACYNQAFPGLPKDGSTSITPLPRPHTSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-