Eden018594.1
Basic Information
- Insect
- Earota dentata
- Gene Symbol
- -
- Assembly
- GCA_027574905.2
- Location
- JAODGB020042253.1:1-3725[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.8 79 4.2 0.2 2 23 75 97 74 97 0.88 2 17 0.00021 0.021 15.4 0.1 1 23 203 226 203 226 0.97 3 17 0.055 5.5 7.9 0.1 1 23 264 286 264 286 0.97 4 17 0.12 12 6.8 1.4 1 23 317 340 317 340 0.97 5 17 5.5e-05 0.0055 17.3 3.7 1 23 343 366 343 366 0.96 6 17 0.032 3.2 8.6 3.0 2 23 373 395 372 395 0.95 7 17 0.002 0.2 12.4 3.1 1 21 526 546 526 547 0.95 8 17 0.0037 0.37 11.5 1.4 2 23 559 581 558 581 0.91 9 17 3.1 3.1e+02 2.3 1.1 1 23 584 607 584 607 0.94 10 17 0.00068 0.068 13.9 0.1 2 23 613 634 612 634 0.95 11 17 0.24 23 5.9 0.1 1 23 638 661 638 661 0.96 12 17 0.35 35 5.3 0.5 2 23 668 690 667 690 0.95 13 17 0.077 7.7 7.4 0.9 2 23 699 721 698 721 0.94 14 17 0.0037 0.36 11.6 0.2 3 23 728 748 727 749 0.95 15 17 2.3 2.3e+02 2.7 3.9 2 23 860 882 859 882 0.94 16 17 1.5 1.5e+02 3.4 0.8 3 23 890 911 888 911 0.86 17 17 0.15 15 6.5 0.9 1 23 924 946 924 946 0.96
Sequence Information
- Coding Sequence
- GCGAAGGTGTGCAAGCTCAACTTAAGCGAGCTTTTCCctggtggcggcgctggtggGGATAATAGCTCGAGTCGCAGGAAGAAGCGGCCGCCGGCGAGGCGCGTGTTGCCTACGCAGACGCAGTCACaggcagcgccatctggcgtGAAGAGCGCGCCGAGCATACAGAACCATGTGGCGCAAGTGGCGCATGTTGCCAAGCAGCTGGAGCAGCTGCCGCAGGTCTGCCTGCTGTGCGACCAGCAATTCCCTAAAGGCACGCTGCTCGCGAAGCATGTGTTCGAGACGCACGGCATTGACATGGCGCAGGTGCTCAGCAGCGAGCCGATACCCGAGGGCATGACGCGCACGCTGCATGCCAACCTGCAACATCTCCAGGCGAGCATGCAAATGAGCGCGCAGCAGGACGGCGTTGCAGGCGTCACGGAGGACGCATCACCTGGCACTCCCGGCAGTCCGCGCATGGGCATCGGCATGGGCGTCAACAGTGcggaaaagaagaagaagttacCCGAACTGGTCAAGATCACCGACCTGAAAACAAAGCGCGAAAGTATTGAGATGAAAGTTCCTGAAAACGATGCGCCGCCCACGCTGACGGCGAGCTACGTCTGCCCCCTCTGTCCGGCGTCGCTCACGAACAAGACGGACCTCTACGCCcacctgcgcctgcgccaCGCGCAGCACGCGAAGCTCATCTGCGGTCTCTGCCTGCACATTGCCACCTCGCTGCACACGCTGCAGGAGCACCTCGACTCTTGCACGAAGGGCCACGCGATTGTGGGGTACTTTGTTTGCCAGGTGTGCAAGTACGCCGAGGATAATCAGAAAGCGCTGGAGAATCACATCCTCGTGCACGAGTTTCTGCTCGCTGATTGCAAGAAGGACGGCAAGATTTTCGACCCGTCCGACTTTATGGAGATGAACGAGGCGTGCGACCCGAAGTTTTATACCTGCAGCGAGTGCGGCTCGTCGCTGCAGAGCTTCAAGGAGTACAGCAGCCACAAGCGCTCGGAGCACTCGATTTTCCACTGCGACCTCTGCAATAAGAGCTACGGGCGCAACTCGCACCTCTGGAAGCATGTCAATCGCGTGCACAAGGGCCATCCGAGCGTGACCTGTCAGTTCTGCTACAAGACGTCGGCGTCCAAGTATCACCTCCTGCAGCATTTCAATAAGATTCACACGCAGAAGGCGGGTAGCTTAAGCTTGGGCCTGGGTCTGGGCTTGAGTAGTACGCCGATGAGCTCGTCGATGTCGACGTCGGGCAGCTCCGCGTCCAAGGCGAAGAACGGCGAGGTGCTCTCGGAGTTCGAGGAGGACGACTTTATGATGAAGAAGTTCGACCCCTTCGACTTCCAATCGGTGCGGCAGAGCTTCATGCGCGCCGAGCTCGAGGCGAAGAAGGCGAGCGTTGACGCGGACGCGCCGAAGAAGGCGTCCGCGCGGAGCACCGAGATGCGCGACTTGTCCTCGCTGAAGATGCCCAGCGTGCCGCCCAAGGAGCTCGACTCCTCGTCGACGATCTACACGAACATCATCACGAACtacacgccgccgacgaacgACGGCGAGTACAAGTGCCCCAAGTGCGCCAAGGCGTTCCACAAGCGCACGCTGCtgaagaagcacaagaagaacTGCCGGCCGCGCCTGCAGAAGGACCTGCTCACGCGCTGCAAGTCCTGCTCGCGCATCTTCAAGGACCGCCAGTCGCTGGCGAAGCATCTGGTCAACTATCACTCGGAGTACTCGTGCGAGATGTGCGCGGAGAAGGTGCAGTCCAAGTGCGAGATCGTCTCGCACATCCGCTTCACGCACCCGGAGTCGCACCTCATCTGCACGGACTGCGGCAACGTGCTGCGCAACAACGACCTGCTGCGCGCGCACCTCCAGGACCACGCCAACTCGTTCGTGTGCCAGTTCTGCGGCGACATCCTGCCGTCGAAGATCAAGCTGAAGATGCACATCCTCTCGCTGCACAGGAAGATACTGTCGCTGTCGTGCGGCGTGTGCCTCAAGCTGTTTGAGAGCCAGCACATCCTGCGCGACCACGTGCGGATGGTGCATCGCGAGGCGCTGCAGCCGCTCACCAGCTGCACGGTCTGCGGCAAGAACTACGGCTCCAAGTGGAAGACCTACGACCACCTGAACAAGTCGCACGGGCGCGTGTTCCGCGCGTGCAAGGTGTGCCTCGAGGTGTTCAACAACGAGCAGGAGCTGCAGGCGCACGTCGACATGCACCACAGCAAGGGCATGAAGAAGTACGTGCCGGCGGAGAACCTGCCGCCGTTCGAGCACTCGCAGAAGGACTCGCAGATGAGCGGCGAGCTGGAGGACGAGTCGGAGCCGGAGGACGAGGAGGGCATCAAGGACGAGTACGAGGGCAAGTCGATACTGGAGAAGCACCTCGTCGGCGCGTACGTCCATCGCAATAACAACTCGGCGGCGAAGCAGAACGGCGTGAGCATGCCGCCGATGGTGCTGTCGTCGCCGCGCAGCCTGCACGCGAAGCACAGCGACGAGCTGATCAACTCCAGCAAGCGCACCGTCTATGTCAACTCGAACGACCCGTCCGTGTGCGACATCTGCCACAAGAACTGGCCGGCGAAGAAGCACCTCTGGCAGCATTACATCCGGTGCCACAAGCAGGTGGCCGCGACGGTCTGCGGCATTTGCTTGTCGACGAACAAAACCTATGCGGATCTGCAGCATCATCTCAACACGGAGCATCCGACGCTGCTGCATGGCAGGGGCTTCGGCTCGAACTTTATCTGCAGGATTTGCGGCCGGTATCACAATGCCAGCTCGAAGCTGAAGCTGCACATGGCGATTCATATCAAGTTTGATTGGTCGCTGCTGGATAGTCCGCAGTGTAACGCGCCGAGTATCAAGCACGAGGTGAAGACGGAGCAGGGCCAGGATCacgagcaggagcaggcgGAGAATGACTATGAAGAGGAGGATGACgatgaggaggaggatgaTGAAGAGGAGCAGGAGCCGCCGCAGAAGATCAAGTTCAAGGTGAAGATTAAGCCACCGCAGAAGCGCGAGCTTGATGTGGGCGACGACGTCAACTTTGAGAGCATGATTGAGCAGGTGGAATGCAGCACGAATTCATCCAGCAGCTCGGAGAATGAGAGCGATGCAGATGGGGAAGGTGTTAACGATGAGGGCGAAGaggacgatgatgatgatgacgaggGCGAGGAGGATGACGAGCAGAATGTGTCGCagatggaggaggaggaggaggacgacgatGAGCAGGTGGACGAGGAGCAGGAGATTGAAGAGATGTCCGACGATGAggacgatgatgacgatggGGAGGATGACGACGATGACCTGCAGGATGTTCCTGAGCTGCCGCAAATTCAACAAATACAACAGATACAACAGGTACAAGAAATCAAAGAGGAATCAACACCTGAAACAGATAATCATGTGGAATATGAGGAGGACACTCTGGATGAGGACGATGAGCAGTACCAAGAGGACGAGGGCGAAGGTGATGAGggtgacggcgacggcgaagatgacgacgacgagggCGAAAGCGATGCGAGTCCCGAGCCTGAACTTGCGCCGGAACTTGAGGCTGAACTCGACACTGaaactgaagctgaagctgaagttgaacCTGAAGCGGAACC
- Protein Sequence
- AKVCKLNLSELFPGGGAGGDNSSSRRKKRPPARRVLPTQTQSQAAPSGVKSAPSIQNHVAQVAHVAKQLEQLPQVCLLCDQQFPKGTLLAKHVFETHGIDMAQVLSSEPIPEGMTRTLHANLQHLQASMQMSAQQDGVAGVTEDASPGTPGSPRMGIGMGVNSAEKKKKLPELVKITDLKTKRESIEMKVPENDAPPTLTASYVCPLCPASLTNKTDLYAHLRLRHAQHAKLICGLCLHIATSLHTLQEHLDSCTKGHAIVGYFVCQVCKYAEDNQKALENHILVHEFLLADCKKDGKIFDPSDFMEMNEACDPKFYTCSECGSSLQSFKEYSSHKRSEHSIFHCDLCNKSYGRNSHLWKHVNRVHKGHPSVTCQFCYKTSASKYHLLQHFNKIHTQKAGSLSLGLGLGLSSTPMSSSMSTSGSSASKAKNGEVLSEFEEDDFMMKKFDPFDFQSVRQSFMRAELEAKKASVDADAPKKASARSTEMRDLSSLKMPSVPPKELDSSSTIYTNIITNYTPPTNDGEYKCPKCAKAFHKRTLLKKHKKNCRPRLQKDLLTRCKSCSRIFKDRQSLAKHLVNYHSEYSCEMCAEKVQSKCEIVSHIRFTHPESHLICTDCGNVLRNNDLLRAHLQDHANSFVCQFCGDILPSKIKLKMHILSLHRKILSLSCGVCLKLFESQHILRDHVRMVHREALQPLTSCTVCGKNYGSKWKTYDHLNKSHGRVFRACKVCLEVFNNEQELQAHVDMHHSKGMKKYVPAENLPPFEHSQKDSQMSGELEDESEPEDEEGIKDEYEGKSILEKHLVGAYVHRNNNSAAKQNGVSMPPMVLSSPRSLHAKHSDELINSSKRTVYVNSNDPSVCDICHKNWPAKKHLWQHYIRCHKQVAATVCGICLSTNKTYADLQHHLNTEHPTLLHGRGFGSNFICRICGRYHNASSKLKLHMAIHIKFDWSLLDSPQCNAPSIKHEVKTEQGQDHEQEQAENDYEEEDDDEEEDDEEEQEPPQKIKFKVKIKPPQKRELDVGDDVNFESMIEQVECSTNSSSSSENESDADGEGVNDEGEEDDDDDDEGEEDDEQNVSQMEEEEEDDDEQVDEEQEIEEMSDDEDDDDDGEDDDDDLQDVPELPQIQQIQQIQQVQEIKEESTPETDNHVEYEEDTLDEDDEQYQEDEGEGDEGDGDGEDDDDEGESDASPEPELAPELEAELDTETEAEAEVEPEAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -