Basic Information

Insect: Earota dentata
Gene Symbol: -
Assembly: GCA_027574905.2
Location: JAODGB020043841.1:1078710-1081189[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.28 28 5.6 0.1 1 20 102 121 102 123 0.90

2 13 0.0041 0.41 11.4 0.5 1 20 135 154 135 155 0.94

3 13 0.81 81 4.2 2.3 1 23 163 185 163 185 0.95

4 13 4.8e-06 0.00048 20.6 4.6 1 23 191 213 191 213 0.98

5 13 2.2e-05 0.0022 18.5 0.7 1 21 341 361 341 366 0.95

6 13 0.0056 0.56 11.0 0.5 1 21 367 387 367 388 0.96

7 13 0.00011 0.011 16.4 1.8 1 20 430 449 430 452 0.93

8 13 0.0054 0.54 11.0 1.0 1 23 457 480 457 480 0.94

9 13 2e-05 0.002 18.7 0.5 1 23 486 508 486 508 0.97

10 13 8.9e-06 0.00088 19.8 2.4 1 23 515 537 515 537 0.98

11 13 0.00069 0.069 13.8 0.8 3 23 545 565 543 565 0.97

12 13 8.5e-05 0.0085 16.7 0.5 1 23 571 594 571 594 0.94

13 13 0.015 1.5 9.6 0.1 1 23 606 628 606 628 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.28	28	5.6	0.1	1	20	102	121	102	123	0.90
2	13	0.0041	0.41	11.4	0.5	1	20	135	154	135	155	0.94
3	13	0.81	81	4.2	2.3	1	23	163	185	163	185	0.95
4	13	4.8e-06	0.00048	20.6	4.6	1	23	191	213	191	213	0.98
5	13	2.2e-05	0.0022	18.5	0.7	1	21	341	361	341	366	0.95
6	13	0.0056	0.56	11.0	0.5	1	21	367	387	367	388	0.96
7	13	0.00011	0.011	16.4	1.8	1	20	430	449	430	452	0.93
8	13	0.0054	0.54	11.0	1.0	1	23	457	480	457	480	0.94
9	13	2e-05	0.002	18.7	0.5	1	23	486	508	486	508	0.97
10	13	8.9e-06	0.00088	19.8	2.4	1	23	515	537	515	537	0.98
11	13	0.00069	0.069	13.8	0.8	3	23	545	565	543	565	0.97
12	13	8.5e-05	0.0085	16.7	0.5	1	23	571	594	571	594	0.94
13	13	0.015	1.5	9.6	0.1	1	23	606	628	606	628	0.97

Sequence Information

Coding Sequence: ATGGAAACGCCGGATTTCCTCGTCCAAGACGACGTTTATGAGAACTCAGTGTTCACCACCAGAGAGCATCAAATCTCTGCAAGGAACTCTCAGGGAAACTCGGCGGAGTCCAGGGAGGAATATGCCGTCGCTCAGGTGTCGCAGGTCCTTCTTGGCAATTCCATTTTTGACCCCAGCAGGCTGCACATCAAGGTGGAGCAGTCCATTGATGCAGCTGATAATGCCATGGATGCTACTGACGATGAAAATGTTGCAGTGGAAGCGCTGCGTTCGCTAAGCGACGCGCGGCCGAAGCAAATGGGGCATCAATGTCCACACTGCAATGTCTATGAGACAACTCAAGTTGATCTGGAGGAGCATCTCATTGGCTGCGCGAAAAACCCCGACTATAATACTCGCACACATCACTGTCCGATCTGTAAAGAAACATTTGAGAAGATCAATGAACTAAACAACCATCTCGTGTGTCACGCATCCAGCCGCCCGCATGCATGTCGAATCTGCGGCAGCCTTTTCCTGCAGAAGCAGGATTTGCACAATCACCTCGTGACGCATGGTATAACGCAGTCGCATCAGTGCAAGCACTGCGGGCAGCAATTCACGCGCATGTCGGCGCTCAGCAATCACATGAAGATCCATAGCTACACCGCCGGTCGGGCGCTCGTTGATAAAATCGGCGACACGCACGAATTGGAGGACATACTCACTGGGAATGACGATCCCGAACTGCAGGCGGTGAACAACACGCGGCAGAAGCTCGTACTTCCCAGTATCAACAACATCTCGCTGACTGGTGGCGCCGCCTGGGCGATCAACTACGAGAGCGAGTCGTACAACGGCATGAATCTCTCCGATATTAACCCGAACATTCCTAACCTCAACGATAAGCCCGACGAGCGCTTGACAGCTTGTGCCGGTGGTGCGGGCACTTCCACTGCGAATGCGCAGGCGCATGATAACTTAATGCTAGTCGACGACGTCAAGGATGCTTCGCTCGAAGGAAGAAGAGACCAGCGGCCGTACAAATGcgacaaatgcaataaaagctTCGCGCGTGAGAAGGCATACATAAATCATATAAACAATGTGAATAATCACTTCACTTGTGACCGGTGTGATCAGCATTTTCCCTCAGAGAGGGCGCTGGAGGGCCACCGGCGATATTGCGGGAATAATGCAACAAACACGGTGAAGATACCGCGAGTTAGCTTTAAGGGTGATAGGAATCTCCAAGGTCAAAtgaatggcgatggcgatcgCGCAGCGGCGTTCGATAAGCGCTAtaaacatgtgtgcgatatCTGCAGCAAGCGCTTCTCGACGAAGCAGAAGCTGTTCCGCCATGTTTGGATTCACAGGAAGAAGCTGCACATCTGCGAGGTGTGCTCGGAGAGCTTCGAGGATCAGAAGCGGCTGGACGCGCACCGCAAGGAGAAACATCCATCGGCCGGTCCGTTCGACTGCGCTGAATGCGGCAAGAGTTTCTGCTCACGGCAAGGTCTTTGGGAACATGGTAGGATTCACACCAAGGACATGACGTACTTTCGCTGCGAAGAGTGCGATAAAACGTTCACGAGCCGGCAGGGCTTTCTCATCCACAAGCGCAAGCACTCGGACGAGCGCCCCTACGGCTGCAAGTACTGCATGAAGAGCTTCCGCGACGGCGGCACGCTGCGCAAGCACGAGCGCATCCACACCGGCGAGCGGCCGCACGCGTGCCCCGTCTGCAGCAAGACGTTCAACCAGAAGGTGGTGCTGCGCGAGCACGTGCGCTGGCTGCACGCGCACACGGCGGCGGAGAACCAAGATGGCCTCTACGCGTGCCAGCTGTGCGCGAGCGCGTTCGCCGAGAAGGACGAGCTGAGCGCGCACTACATGAAGCACAGCGATCAGCTGGCGCAGATGGCGAAGGTCGCCTCCAAGCAGAACATCAGCAGCCAGGTGATCAGCGCGGCGAAGGCGTCGAAGATGGAGGCGGACGCGAGTCTGATTTGCTCGACGATGGTGTCGTGCGACGTGGAGATCAACGAGGAGATGGCGtcggcgcaggcgcagcagggtggcgcagcgcgcggcgacgcgacgtACTTCGAGATGACGCGCGTGCCGCCAGATGGCGCCGCAGCGGcgcccgccagcgccaacTACAAACCGAAGATCAAGGTTAAGGAGCTGCTGCGCTCGCCGGACATGAAGATGGAGTGCGCGACGGAGGACGAAGTCAGCCAGACAAGGAGGAGCTGA
Protein Sequence: METPDFLVQDDVYENSVFTTREHQISARNSQGNSAESREEYAVAQVSQVLLGNSIFDPSRLHIKVEQSIDAADNAMDATDDENVAVEALRSLSDARPKQMGHQCPHCNVYETTQVDLEEHLIGCAKNPDYNTRTHHCPICKETFEKINELNNHLVCHASSRPHACRICGSLFLQKQDLHNHLVTHGITQSHQCKHCGQQFTRMSALSNHMKIHSYTAGRALVDKIGDTHELEDILTGNDDPELQAVNNTRQKLVLPSINNISLTGGAAWAINYESESYNGMNLSDINPNIPNLNDKPDERLTACAGGAGTSTANAQAHDNLMLVDDVKDASLEGRRDQRPYKCDKCNKSFAREKAYINHINNVNNHFTCDRCDQHFPSERALEGHRRYCGNNATNTVKIPRVSFKGDRNLQGQMNGDGDRAAAFDKRYKHVCDICSKRFSTKQKLFRHVWIHRKKLHICEVCSESFEDQKRLDAHRKEKHPSAGPFDCAECGKSFCSRQGLWEHGRIHTKDMTYFRCEECDKTFTSRQGFLIHKRKHSDERPYGCKYCMKSFRDGGTLRKHERIHTGERPHACPVCSKTFNQKVVLREHVRWLHAHTAAENQDGLYACQLCASAFAEKDELSAHYMKHSDQLAQMAKVASKQNISSQVISAAKASKMEADASLICSTMVSCDVEINEEMASAQAQQGGAARGDATYFEMTRVPPDGAAAAPASANYKPKIKVKELLRSPDMKMECATEDEVSQTRRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -