Basic Information

Gene Symbol
stc
Assembly
GCA_963669185.1
Location
OY769903.1:17788089-17797651[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 1.9e+04 -4.4 1.6 15 19 541 545 540 545 0.81
2 15 0.14 1.3e+03 -0.4 0.1 4 10 574 580 573 581 0.94
3 15 1.9e-06 0.018 15.2 10.8 4 18 591 605 589 606 0.94
4 15 2.2e-06 0.021 14.9 15.4 1 18 642 659 642 660 0.93
5 15 0.58 5.5e+03 -2.4 0.6 1 5 669 673 669 678 0.83
6 15 1.8e-09 1.7e-05 24.8 14.4 1 19 698 716 698 716 0.97
7 15 0.31 3e+03 -1.5 1.8 5 10 745 750 745 750 0.96
8 15 0.0097 93 3.3 12.3 4 18 763 777 756 778 0.86
9 15 1.6 1.5e+04 -3.8 2.0 5 10 807 812 807 812 0.93
10 15 0.0054 51 4.1 11.9 1 11 818 828 818 840 0.88
11 15 1.9e-07 0.0019 18.3 19.5 1 19 845 863 845 863 0.98
12 15 0.41 3.9e+03 -1.9 0.7 5 10 891 896 890 896 0.94
13 15 2 1.9e+04 -7.0 10.3 7 19 907 920 902 920 0.63
14 15 7.7e-07 0.0074 16.4 14.4 1 16 956 971 956 982 0.86
15 15 8.1e-06 0.077 13.1 13.6 1 19 988 1007 988 1007 0.97

Sequence Information

Coding Sequence
ATGGCCACCTGGGATGGATCAGATCAGGCTGGTCCACCAGAAGatccaaatttttatctcctgGCTCATGCGATAAATGCAGCAGCCAATCCTCAAACCTGGGATTACTACCCATCATCGGGAAATGCCGCATATAATCACCGTTCTGTGGGCCTATATGCTCAAAACAATCTTCCCAATGTATCATCAAATCAGGGATTTCCGAGAACGACGTATCAGGAGGCAATTTTTCCACcacaaaatcatgaaaatataacACCAATTGTTGATGAGAGACCTTGCTTTTTCGAGAATAATCGTACTTCTCAAAAACTTCCATCATACAATTCACGCAATCCCAATAATTACATTCAAAATGATGGAGAATTAACAAATACACGATACTCGAGTCCAAAGAGCGAAATGAGCCTTGCCAAATATTCGAATCTTCACGCTAGTGCTAGTGAATTCGTGCCAACGGTAACgacgaaaaatatacaaaaaaattcgtcCCAATCGTATAACGGAAGTGAGGCTCAGTACAATGATTATGGGACTGAAAATTCTCAGGGTTCGTCTTCTTCTCATATCTTCTTCAGTGATAATAGAAATCGTACCAACGATCGACGTTACGATGGAGCAAGAACTAATAATTCTTATCGCGGCTCTTACAAAAATCAACGACCACGAAATTATGAGCAAGCCTATGGAGCTCAACGAGGAGGAGGTGGAAATGATTCAATGATGATTAATCAGGAAATATCTTCGATAAGTCTTCAAGGGGATGATAATTCTTATCGCGGCAATGCCAAAAATCAGAGAGCTCGCAATCATGGCAGATTTCAGAATGAGCGTTTTTCTAATAATCGCCAGCAgcaaaacaacgaaaaatcgaGGCCTGATAGAAGAAAAATGCAAGTTGATACTTGGCAAAATCCTGGCGAATCTCATCGAGATGGAACGAATAACGAGGATACACGTGAAAATCACACAGGCCAACACAATAATCGTGGAAAATGGccgagaaatgagagaagatATCAAAATGATAGATATCAAGTGGGTAATCGTCAgcagaatgaaaaatctcaccAAGCCACTAATGATTATGAGGAGCAACAAATCTACGAGTCAGCGACATCGGCAAATTCGTCAATCGGTACGAGACGAGAAATTTCGCACAATCGcgatagcgagagaatttATAGAAATGATAGAGGACGAGGAAAACCAAGAGATGCCTTGGCTAATTTTGATAGTGGCGGAAATTCTTATTATGATCATGAGGGACATGCGGAGAgtcacgagagagagacgaaatttGAGAGATCGCGAGAtgatgggaaaaaattgagagattcGCGTGATGACGAATCGCTCAATTGGAGACAGAAGGATAAAACACCGAACAGGGGTGGAATGATTaagaaaaacacgaaaaaaattgaatttgATGATGATGCAAGTCAGAGAGAACGATTGACCGAGTTATTGAATCAGGGCCACTTGGAGTGTCTCATTTGTTGCGACTACATAAGGCAAAATGATCCGGTTTGGTCCTGCAACAATTGTTATCACGTGCTGCATCTCAAGTGTCTGAAGAAATGGGCTCATTCGTCACAGGGCGAGAATGGTTGGCGCTGTCCGGCATGCCAGAATGTGAGCTTGACCGTTCCCGAAATTTATCACTGTTTCTGCGGCAAAGCTCGAGCTCCCGAGTGGAATCGTCGCGATGTTGCTCATTCTTGTGGCGAAATTTGCGGTCGTCTTAGAGCTAAGAACAATTGTGTACACAAATGCACGTTGCTCTGTCACCCGGGCGCCTGTCCCGAGTGCATTGCCATGGTGACAAGACACTGCGGTTGTGGCAAAACTTCGCAGAGTCTAAAATGCAGCACAACGACACTCGTCGTTTGTGAGGGCATTTGCAAAAAGAAACTCAATTGTGTCATTCAcgaatgtgagaaaaaatgtcatcatGGCGATTGCGGTCCTTGTGAAAAAACTCTCCATCAagaATGTTATTGCGGCAAGCACGAGCGAGACGTAACTTGCACCACCGACGTACCATCGACTTACGGCTGTGACGAAATATGCGAAAAATTGCTCGCGTGCGGCAATCATCGATGTAAAGAAAAGTGCCATCCGGGTAATTGCGATTCTTGTACACTTCAACCATCTATGGTGACGCATTGTTGCTGTAGACAAACTCCACTAGCTGTTGAGCGCAAGAGCTGTCTCGATCCAATTCCCACGTGTGAAAAAGtgtgttcgaaaaaattgaaatgcgGTCAACCGAgCGATCCTCACACCTGCAAAATTGATTGTCATCCAGATGATTGTCCGGAATGCGAGCTAACGACAAAAGTTCGTTGTCGTTGCGGCAACATGGATCGTGAAATCGCTTGCAAAGAATTGCGCACCAAAGCAGATGATGCACGTTGCGAGAAAAAGTGCACGAAAAAACGATCGTGTGGCAAGCACAAGTGCAATCAGCCATGTTGCATCGATATCGAGCACATTTGTCCAATGCCATGCTCGAAGACACTCAGTTGTGGAAGGCACAGATGTCAATTGTGCTGTCACAAAGGAAGGTGTCAGCCTTGTCAGGAAATGAGCTTTAACGAGTTGCACTGTGAGTGCGGTTCATCAGTGATTTATCCTCCTGTCCCATGTGGCACAAGGCGTCCAACTTGCAATCGTCCGTGCACTCGTCAACACTCTTGCGGTCACGAGGTCATTCACAATTGTCACAGCGATCCAACTTGTCCGCCTTGCACGGTATTGACGCAACGCTGGTGTTATGGCAAGCACGAACTCAGAAAAGCCGTTCCATGCCatgttaatgaaatttcatgtgGTATGCCATGCAACAAGCCCATATCTTGTGGTCGTCACAAGTGTATCACACTTTGTCATTCCGGTCCATGTGAAAAACCGGGCCAAATCTGTACGCAACCGTGTACAATAGCCAGGGAAATGTGCGGTCATATTTGTGCAGCTCCTTGTCACGAGGGAAAATGTCCAGACACACCGTGCAAAGAAATGGTCAAGGTGACTTGCAACTGCGGCCACAGAAGCATGACTCGTGCATGTGCGGAAAATTCTCGTGATTTTCAGAGAATAGCGAGTGGCATATTGGCAAGTAAAATGGCTGATATGCAACTCGGTCATTCGGTGGATCTGGAAGAAGTTTTTGGTCAAGGAgcaaagaaacaaaatcaattgaaaactCTTGAGTGCAGCGAAGAGTGCAAAATAATAGCGAGAAATCGTCGAATAGCTCTTGGTCTACAAATTGTTAATCCTGATTTGAGTGGCAAACTCGTGCCCCGTTATACTGAATCGATGAAACAATGGGCGAAAAAAGATCCACACTTTTGTCAGATGGTACACGAGAAACTCACGGAATTGGTACAATTGGCAAAAACATCGAAACAAAAATCACGCAGCTATTCGTTTGACAGTATGAATCGAGATAAGCGTAATTTCGTACACGAGAGTTGTGAACATTTTGGTTGCGAGAGTCAAGCCTACGATAAGGAACCCAAAAGAAATGTCGTGGCTACCGCGGTGAAGGATAAgtGTTGGATGCCGAGTTACAGTTTATTGGAGATCGTGCAACGAGAAAATGGTCAGCGCAAAGTGCCTCGACCAATGCTCAATTCGTCAAAACCGAAATCTACTCTACGATTATCGGAAGTGCTATCCTCGACTGCCAGGGCGAGTCAGAAGCTTCAGCCTGCAGCTTCGTCCGCGACATCAAAATCACCAGAGCctgaaattgattatttcgattttccaAATGGGAAAACCGGCAAATGGGCCAATGCTTAA
Protein Sequence
MATWDGSDQAGPPEDPNFYLLAHAINAAANPQTWDYYPSSGNAAYNHRSVGLYAQNNLPNVSSNQGFPRTTYQEAIFPPQNHENITPIVDERPCFFENNRTSQKLPSYNSRNPNNYIQNDGELTNTRYSSPKSEMSLAKYSNLHASASEFVPTVTTKNIQKNSSQSYNGSEAQYNDYGTENSQGSSSSHIFFSDNRNRTNDRRYDGARTNNSYRGSYKNQRPRNYEQAYGAQRGGGGNDSMMINQEISSISLQGDDNSYRGNAKNQRARNHGRFQNERFSNNRQQQNNEKSRPDRRKMQVDTWQNPGESHRDGTNNEDTRENHTGQHNNRGKWPRNERRYQNDRYQVGNRQQNEKSHQATNDYEEQQIYESATSANSSIGTRREISHNRDSERIYRNDRGRGKPRDALANFDSGGNSYYDHEGHAESHERETKFERSRDDGKKLRDSRDDESLNWRQKDKTPNRGGMIKKNTKKIEFDDDASQRERLTELLNQGHLECLICCDYIRQNDPVWSCNNCYHVLHLKCLKKWAHSSQGENGWRCPACQNVSLTVPEIYHCFCGKARAPEWNRRDVAHSCGEICGRLRAKNNCVHKCTLLCHPGACPECIAMVTRHCGCGKTSQSLKCSTTTLVVCEGICKKKLNCVIHECEKKCHHGDCGPCEKTLHQECYCGKHERDVTCTTDVPSTYGCDEICEKLLACGNHRCKEKCHPGNCDSCTLQPSMVTHCCCRQTPLAVERKSCLDPIPTCEKVCSKKLKCGQPSDPHTCKIDCHPDDCPECELTTKVRCRCGNMDREIACKELRTKADDARCEKKCTKKRSCGKHKCNQPCCIDIEHICPMPCSKTLSCGRHRCQLCCHKGRCQPCQEMSFNELHCECGSSVIYPPVPCGTRRPTCNRPCTRQHSCGHEVIHNCHSDPTCPPCTVLTQRWCYGKHELRKAVPCHVNEISCGMPCNKPISCGRHKCITLCHSGPCEKPGQICTQPCTIAREMCGHICAAPCHEGKCPDTPCKEMVKVTCNCGHRSMTRACAENSRDFQRIASGILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECSEECKIIARNRRIALGLQIVNPDLSGKLVPRYTESMKQWAKKDPHFCQMVHEKLTELVQLAKTSKQKSRSYSFDSMNRDKRNFVHESCEHFGCESQAYDKEPKRNVVATAVKDKCWMPSYSLLEIVQRENGQRKVPRPMLNSSKPKSTLRLSEVLSSTARASQKLQPAASSATSKSPEPEIDYFDFPNGKTGKWANA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01057318;
90% Identity
-
80% Identity
-